Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008872.1

Orthogroup ID

OG0000683

Physical Location & Seq

Genomic Coordinates Forward (+)

34694 .. 37639

Gene Structure 2946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008872.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

atgatgcgtcctccctttcctcccatgtataatgaaagtaaaaggcctgatgtcaatactatatcggaagtggtagttattgtcaatgatatctggaaggtgggagatttagttgattggtggaaggatgattgttattggtctggaaaagtagcagaagtattaggggatgaaaaagttaaggttgagttgccacgtcctcctgttggtgaaggagttgaaggagagacctatgaggcttcttgcaacgacttgcgagcatccctgaattggtctctagaaggcggttggacagtgcctacatccaaggagagtgaaaatgggcgtccttgtgctcgagtaattaagcctgataatcaaggggacattgcaagcttgatggtccaatctttgggtgatggaagtagggatgtccaagctattgctggtgtcaagcaacctttaacaggaaaggagacaccagctacagaaacaaatatggagtctgatgtgtcagatagtgggtttgagagaatgagttgcccagatactgtttcaaaattgcatgttaaagatgcatcaaatgaaatggaggcaactacaacaagggtagacataattgataacactaagcccgtaaagagaaagaaaactcatgaagacatagtgttaaattcaatgaactctgatacattagaagctgcacttttggacttagaggaacttgtaaaccggattaaatggatgaagggtatcttggagattggattacctttgactggtgcgatgagaccccgttggaaatttcctggagatcattcctcgtccaccccaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet

Protein Analysis

272

Amino Acids

30.14

Weight (kDa)

4.87

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42670 AT5G52070 AT5G52070 AT5G52070 AT5G52070 AT5G52070 AT5G52070
fragaria_vesca	FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990
malus_domestica	MD16G1211400.v1.1
prunus_persica	Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1
pyrus_communis	pycom16g17720
rosa_chinensis	RchiOBHm_Chr4g0391121 RchiOBHm_Chr5g0051721 RchiOBHm_Chr7g0211841
rosa_laevigata	RLG00000002960 RLG00000009887 RLG00000034865
rosa_multiflora	Rmu_sc0000068.1_g000012 Rmu_sc0001824.1_g000045 Rmu_sc0005322.1_g000013 Rmu_sc0008872.1_g000005 Rmu_sc0009005.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027220 Rroxscaffold_3G00247380 Rroxscaffold_5G00336910
rosa_rugosa	Rorug03G0334300 Rorug05G0277200 Rorug05G0277300 Rorug05G0277300 Rorug05G0277300 Rorug05G0277400 Rorug05G0277500 Rorug07G0129300 Rorug07G0129400 Rorug07G0129500 Rorug07G0129500
rosa_samantha	Rh4AG034700 Rh4BG029900 Rh4CG038500 Rh4DG031900 Rh4DG032200 Rh5AG349400 Rh5BG361000 Rh5CG385600 Rh5DG375800 Rh7AG261900 Rh7BG255600 Rh7DG268400
rosa_wichuraiana	Rw4G001280 Rw4G002700 Rw5G033010 Rw7G022330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	391
AccI	GTMKAC	1 cut(s)	591
AciI	CCGC	1 cut(s)	285
AcsI	RAATTY	2 cut(s)	652, 782
AcyI	GRCGYC	1 cut(s)	325
AfiI	CCNNNNNNNGG	5 cut(s)	206, 270, 391, 446, 758
AgsI	TTSAA	3 cut(s)	221, 537, 657
AjiI	CACGTC	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	787
AjuI	GAANNNNNNNTTGG	2 cut(s)	719, 751
AluBI	AGCT	4 cut(s)	375, 419, 464, 680
AluI	AGCT	4 cut(s)	375, 419, 464, 680
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	4 cut(s)	221, 279, 449, 763
AlwNI	CAGNNNCTG	1 cut(s)	530
Ama87I	CYCGRG	1 cut(s)	336
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	1 cut(s)	680
ApoI	RAATTY	2 cut(s)	652, 782
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	2 cut(s)	221, 407
AvaI	CYCGRG	1 cut(s)	336
AvaII	GGWCC	1 cut(s)	382
BbsI	GAAGAC	1 cut(s)	645
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	667
BccI	CCATC	2 cut(s)	373, 392
BciT130I	CCWGG	1 cut(s)	789
BcoDI	GTCTC	4 cut(s)	221, 279, 449, 763
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	1 cut(s)	681
BlsI	GCNGC	1 cut(s)	682
Bme1390I	CCNGG	1 cut(s)	789
Bme18I	GGWCC	1 cut(s)	382
BmeT110I	CYCGRG	1 cut(s)	336
BmgBI	CACGTC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	382
BmrFI	CCNGG	1 cut(s)	789
BmsI	GCATC	3 cut(s)	269, 544, 566
BpiI	GAAGAC	1 cut(s)	645
BpmI	CTGGAG	1 cut(s)	810
BsaHI	GRCGYC	1 cut(s)	325
BsaI	GGTCTC	3 cut(s)	221, 279, 763
BsaJI	CCNNGG	1 cut(s)	306
BsaWI	WCCGGW	1 cut(s)	711
BsaXI	ACNNNNNCTCC	2 cut(s)	96, 126
Bsc4I	CCNNNNNNNGG	5 cut(s)	206, 270, 391, 446, 758
Bse1I	ACTGG	1 cut(s)	763
Bse3DI	GCAATG	1 cut(s)	366
BseBI	CCWGG	1 cut(s)	789
BseDI	CCNNGG	1 cut(s)	306
BseGI	GGATG	6 cut(s)	133, 175, 260, 302, 415, 729
BseLI	CCNNNNNNNGG	5 cut(s)	206, 270, 391, 446, 758
BseMI	GCAATG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	763
BseXI	GCAGC	1 cut(s)	667
BsgI	GTGCAG	1 cut(s)	666
BshFI	GGCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	336
BsiSI	CCGG	1 cut(s)	712
BslFI	GGGAC	1 cut(s)	377
BslI	CCNNNNNNNGG	5 cut(s)	206, 270, 391, 446, 758
BsmAI	GTCTC	4 cut(s)	221, 279, 449, 763
BsmFI	GGGAC	1 cut(s)	377
BsnI	GGCC	1 cut(s)	46
Bso31I	GGTCTC	3 cut(s)	221, 279, 763
BsoBI	CYCGRG	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp143I	GATC	1 cut(s)	793
BspACI	CCGC	1 cut(s)	285
BspANI	GGCC	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	634
BspTNI	GGTCTC	3 cut(s)	221, 279, 763
BsrDI	GCAATG	1 cut(s)	366
BsrI	ACTGG	1 cut(s)	763
BssECI	CCNNGG	1 cut(s)	306
BssMI	GATC	1 cut(s)	793
BssNI	GRCGYC	1 cut(s)	325
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	2 cut(s)	295, 532
BstACI	GRCGYC	1 cut(s)	325
BstC8I	GCNNGC	2 cut(s)	258, 373
BstDEI	CTNAG	2 cut(s)	609, 694
BstENI	CCTNNNNNAGG	1 cut(s)	444
BstF5I	GGATG	6 cut(s)	133, 175, 260, 302, 415, 729
BstKTI	GATC	1 cut(s)	796
BstMAI	GTCTC	4 cut(s)	221, 279, 449, 763
BstMBI	GATC	1 cut(s)	793
BstNI	CCWGG	1 cut(s)	789
BstNSI	RCATGY	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	787
BstSFI	CTRYAG	1 cut(s)	465
BstV1I	GCAGC	1 cut(s)	667
BstV2I	GAAGAC	1 cut(s)	645
BsuRI	GGCC	1 cut(s)	46
BtgZI	GCGATG	1 cut(s)	779
BtrI	CACGTC	1 cut(s)	197
BtsCI	GGATG	6 cut(s)	133, 175, 260, 302, 415, 729
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	258, 373
CaiI	CAGNNNCTG	1 cut(s)	530
CciI	TCATGA	1 cut(s)	634
Cfr13I	GGNCC	1 cut(s)	382
CseI	GACGC	1 cut(s)	314
CviAII	CATG	3 cut(s)	25, 545, 635
CviJI	RGCY	8 cut(s)	46, 239, 349, 375, 419, 464, 613, 680
CviKI_1	RGCY	8 cut(s)	46, 239, 349, 375, 419, 464, 613, 680
DdeI	CTNAG	2 cut(s)	609, 694
DpnI	GATC	1 cut(s)	795
DpnII	GATC	1 cut(s)	793
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	46
Eco31I	GGTCTC	3 cut(s)	221, 279, 763
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	382
Eco88I	CYCGRG	1 cut(s)	336
EcoNI	CCTNNNNNAGG	1 cut(s)	444
EcoRII	CCWGG	1 cut(s)	787
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	306
EcoT22I	ATGCAT	1 cut(s)	559
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	28, 548, 638
FaiI	YATR	9 cut(s)	26, 30, 62, 234, 479, 546, 596, 636, 644
FalI	AAGNNNNNCTT	4 cut(s)	669, 701, 719, 751
FaqI	GGGAC	1 cut(s)	377
FatI	CATG	3 cut(s)	24, 544, 634
FblI	GTMKAC	1 cut(s)	591
Fnu4HI	GCNGC	1 cut(s)	681
FokI	GGATG	6 cut(s)	140, 182, 247, 289, 422, 736
Fsp4HI	GCNGC	1 cut(s)	681
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	1 cut(s)	681
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	712
HgaI	GACGC	1 cut(s)	314
Hin1I	GRCGYC	1 cut(s)	325
Hin1II	CATG	3 cut(s)	28, 548, 638
HindIII	AAGCTT	1 cut(s)	373
HinfI	GANTC	1 cut(s)	482
HpaII	CCGG	1 cut(s)	712
HphI	GGTGA	2 cut(s)	221, 407
Hpy166II	GTNNAC	3 cut(s)	592, 709, 807
Hpy188I	TCNGA	4 cut(s)	67, 487, 496, 667
Hpy188III	TCNNGA	4 cut(s)	94, 144, 278, 635
Hpy8I	GTNNAC	3 cut(s)	592, 709, 807
HpyAV	CCTTC	6 cut(s)	91, 118, 206, 215, 275, 721
HpyCH4III	ACNGT	2 cut(s)	295, 532
HpyCH4IV	ACGT	1 cut(s)	196
HpyCH4V	TGCA	5 cut(s)	246, 371, 544, 557, 683
HpyF3I	CTNAG	2 cut(s)	609, 694
HpySE526I	ACGT	1 cut(s)	196
Hsp92I	GRCGYC	1 cut(s)	325
Hsp92II	CATG	3 cut(s)	28, 548, 638
Kzo9I	GATC	1 cut(s)	793
Lsp1109I	GCAGC	1 cut(s)	667
LweI	GCATC	3 cut(s)	269, 544, 566
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	1 cut(s)	196
MalI	GATC	1 cut(s)	795
MboI	GATC	1 cut(s)	793
MboII	GAAGA	1 cut(s)	650
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	6 cut(s)	268, 342, 539, 597, 652, 782
MlyI	GAGTC	1 cut(s)	491
MmeI	TCCRAC	2 cut(s)	269, 758
MnlI	CCTC	7 cut(s)	21, 30, 210, 229, 565, 691, 811
Mph1103I	ATGCAT	1 cut(s)	559
MseI	TTAA	6 cut(s)	180, 345, 443, 549, 650, 717
MspI	CCGG	1 cut(s)	712
MspR9I	CCNGG	1 cut(s)	789
MvaI	CCWGG	1 cut(s)	789
NdeII	GATC	1 cut(s)	793
NlaIII	CATG	3 cut(s)	28, 548, 638
NsiI	ATGCAT	1 cut(s)	559
NspI	RCATGY	1 cut(s)	548
PaeR7I	CTCGAG	1 cut(s)	336
PagI	TCATGA	1 cut(s)	634
PceI	AGGCCT	1 cut(s)	46
PflMI	CCANNNNNTGG	1 cut(s)	391
PfoI	TCCNGGA	1 cut(s)	787
PkrI	GCNGC	1 cut(s)	682
PleI	GAGTC	1 cut(s)	490
PpsI	GAGTC	1 cut(s)	490
Psp6I	CCWGG	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	787
PspPI	GGNCC	1 cut(s)	382
PspXI	VCTCGAGB	1 cut(s)	336
PstNI	CAGNNNCTG	1 cut(s)	530
SaqAI	TTAA	6 cut(s)	180, 345, 443, 549, 650, 717
SatI	GCNGC	1 cut(s)	681
Sau3AI	GATC	1 cut(s)	793
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	491
ScrFI	CCNGG	1 cut(s)	789
SduI	GDGCHC	1 cut(s)	337
SfaNI	GCATC	3 cut(s)	269, 544, 566
SfcI	CTRYAG	1 cut(s)	465
Sfr274I	CTCGAG	1 cut(s)	336
SinI	GGWCC	1 cut(s)	382
SlaI	CTCGAG	1 cut(s)	336
SmlI	CTYRAG	1 cut(s)	336
SmoI	CTYRAG	1 cut(s)	336
Sse9I	AATT	6 cut(s)	268, 342, 539, 597, 652, 782
SseBI	AGGCCT	1 cut(s)	46
SsiI	CCGC	1 cut(s)	285
SspMI	CTAG	1 cut(s)	278
StuI	AGGCCT	1 cut(s)	46
StyD4I	CCNGG	1 cut(s)	787
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	295, 532
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	1 cut(s)	337
TasI	AATT	6 cut(s)	268, 342, 539, 597, 652, 782
Tru1I	TTAA	6 cut(s)	180, 345, 443, 549, 650, 717
Tru9I	TTAA	6 cut(s)	180, 345, 443, 549, 650, 717
TscAI	CASTG	1 cut(s)	300
TseI	GCWGC	1 cut(s)	680
TspDTI	ATGAA	6 cut(s)	48, 186, 579, 651, 674, 740
TspRI	CASTG	1 cut(s)	300
Van91I	CCANNNNNTGG	1 cut(s)	391
VpaK11BI	GGWCC	1 cut(s)	382
XagI	CCTNNNNNAGG	1 cut(s)	444
XapI	RAATTY	2 cut(s)	652, 782
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	548
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XhoI	CTCGAG	1 cut(s)	336
XmiI	GTMKAC	1 cut(s)	591
XspI	CTAG	1 cut(s)	278
Zsp2I	ATGCAT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.