pycom16g17720

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000683
Physical Location & Seq
Forward (+)
14006243 .. 14013158
6916 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g17720.5

Sequence Viewer

Length: 1092 bp
ATGGGCATGAATCGCCTACCTTTTGAAGCTGGCCAAGAGGTTGAATGCAGGTCGTTTATCACGGGTTATCGCGGTGCGTGGTTCCGATGTAAGATAAAGGAATACGGATTGAGACAAGCTCGGTTGTCGTCTAGCATGGAGTATATTGACTTTCCTGATGAAAAAGTGAAGTGGACAAGAGTATATCAAAAAATCCCTGGTGTTAGTAAGAAGTCAAAGTCATTAAAAGTGCAATTGATGTTGCGTCCTCAGTTTCCTCCCATCTATAATAGAAGTACAATACCTGATGCCAATACCAGAGCAGAAGTGGTGGTTATTGTCAACGATGATTGGAAAGTGGGAGATTTAGTTGATTGGTGGAAGGATGGTTGTTATTGGTCTGGAAGAATAACAGAAATATTGGGGAATGAGAGCTTTAAGTTTGATTTGCCACCTCCTCCAGATGGTGAAGGATATTCCTATGAAGTTTCTTCCAAGGAATTGCGCCCATCCTTGGATTGGTCTCCAGAGAATGGTTGGACAGTACCCACACCCATGGAGGGTGAACGTGTGCATCCTTGTGCTCGAGTAATGAAGCCTGGGGAAGTTCCAAGCTGTACAGCCCATGCTGTGGGTGATGAAAGTAGGTGTCTCCAAGCTTTTGCTACAGCATCACATCGTTCACCTTCTTCTCACGTGTCTGCTAGCTCATTGCAACCTCCTAAAGGATTAGAGGAAATGGCAAAGCAACCTCTAGGCACTATAAAAACTACGGAGAAACCACCACCAGATGTAAATGTTGGATCCGATATGGCAGATAGTGGGATTGCGAAGGCAAGTTGCTCAGATAGTGTTTCAAGTTCGCATGTTAAAAGTGAGCCAAAGGGGATGCAAAGAAGTGCAACCGGAGAAGATAGAGTTGACAACAATGTGTCGTTGAAGAAAATGAAAACGGATGGGAACATAGTTTTAAATTCGACGAAGTCTGATACATTAGAAGCTGCAATTCTGGACTTGGAGGAACTTGTAAGCCGGGTTAAATGGATGAAGGGCGTCTTAGAGATTGGAATGCCTTTGACAAGTGCCACGCGCCCCACTTGGAAGTTTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

364

Amino Acids

40.35

Weight (kDa)

7.56

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 39
AccB7I CCANNNNNTGG 2 cut(s) 512, 610
AccII CGCG 2 cut(s) 72, 1069
AciI CCGC 1 cut(s) 72
AclWI GGATC 2 cut(s) 777, 790
AcoI YGGCCR 1 cut(s) 31
AcsI RAATTY 1 cut(s) 952
AcvI CACGTG 1 cut(s) 676
AcyI GRCGYC 1 cut(s) 1032
AfaI GTAC 3 cut(s) 277, 525, 598
AfiI CCNNNNNNNGG 7 cut(s) 443, 493, 498, 512, 539, 610, 704
AflIII ACRYGT 2 cut(s) 547, 675
AgsI TTSAA 4 cut(s) 26, 44, 837, 919
AjnI CCWGG 2 cut(s) 196, 577
AluBI AGCT 7 cut(s) 29, 119, 414, 594, 638, 687, 980
AluI AGCT 7 cut(s) 29, 119, 414, 594, 638, 687, 980
Alw21I GWGCWC 1 cut(s) 565
Alw26I GTCTC 3 cut(s) 106, 507, 635
AlwI GGATC 2 cut(s) 777, 790
Ama87I CYCGRG 1 cut(s) 564
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 980
ApoI RAATTY 1 cut(s) 952
AspLEI GCGC 2 cut(s) 486, 1071
AsuC2I CCSGG 1 cut(s) 1013
AsuHPI GGTGA 4 cut(s) 458, 554, 626, 654
AsuNHI GCTAGC 1 cut(s) 683
AvaI CYCGRG 1 cut(s) 564
BalI TGGCCA 1 cut(s) 33
BamHI GGATCC 1 cut(s) 782
BbrPI CACGTG 1 cut(s) 676
Bbv12I GWGCWC 1 cut(s) 565
BbvI GCAGC 1 cut(s) 967
BccI CCATC 5 cut(s) 269, 359, 437, 496, 929
BciT130I CCWGG 2 cut(s) 198, 579
BcnI CCSGG 1 cut(s) 1013
BcoDI GTCTC 3 cut(s) 106, 507, 635
BfaI CTAG 3 cut(s) 132, 684, 734
BfmI CTRYAG 1 cut(s) 645
BfuAI ACCTGC 1 cut(s) 39
BisI GCNGC 1 cut(s) 981
BlsI GCNGC 1 cut(s) 982
Bme1390I CCNGG 3 cut(s) 198, 579, 1013
BmeT110I CYCGRG 1 cut(s) 564
BmiI GGNNCC 2 cut(s) 83, 784
BmrFI CCNGG 3 cut(s) 198, 579, 1013
BmsI GCATC 4 cut(s) 277, 562, 659, 858
BmtI GCTAGC 1 cut(s) 687
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BpmI CTGGAG 2 cut(s) 423, 489
BpuMI CCSGG 1 cut(s) 1013
BsaAI YACGTR 1 cut(s) 676
BsaHI GRCGYC 1 cut(s) 1032
BsaI GGTCTC 1 cut(s) 507
BsaJI CCNNGG 5 cut(s) 196, 474, 492, 534, 578
BsaWI WCCGGW 1 cut(s) 884
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 7 cut(s) 443, 493, 498, 512, 539, 610, 704
Bse3DI GCAATG 1 cut(s) 689
BseBI CCWGG 2 cut(s) 198, 579
BseDI CCNNGG 5 cut(s) 196, 474, 492, 534, 578
BseGI GGATG 6 cut(s) 370, 488, 553, 873, 940, 1029
BseLI CCNNNNNNNGG 7 cut(s) 443, 493, 498, 512, 539, 610, 704
BseMI GCAATG 1 cut(s) 689
BseMII CTCAG 2 cut(s) 263, 837
BseRI GAGGAG 1 cut(s) 426
BseXI GCAGC 1 cut(s) 967
Bsh1236I CGCG 2 cut(s) 72, 1069
BshFI GGCC 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 565
BsiHKCI CYCGRG 1 cut(s) 564
BsiSI CCGG 2 cut(s) 885, 1012
BslI CCNNNNNNNGG 7 cut(s) 443, 493, 498, 512, 539, 610, 704
BsmAI GTCTC 3 cut(s) 106, 507, 635
BsmI GAATGC 2 cut(s) 50, 1053
BsnI GGCC 1 cut(s) 33
Bso31I GGTCTC 1 cut(s) 507
BsoBI CYCGRG 1 cut(s) 564
Bsp1286I GDGCHC 1 cut(s) 565
Bsp1407I TGTACA 1 cut(s) 596
Bsp143I GATC 1 cut(s) 782
Bsp19I CCATGG 1 cut(s) 534
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 2 cut(s) 262, 836
BspFNI CGCG 2 cut(s) 72, 1069
BspLI GGNNCC 2 cut(s) 83, 784
BspMI ACCTGC 1 cut(s) 39
BspOI GCTAGC 1 cut(s) 687
BspPI GGATC 2 cut(s) 777, 790
BspTNI GGTCTC 1 cut(s) 507
BsrDI GCAATG 1 cut(s) 689
BsrGI TGTACA 1 cut(s) 596
BssECI CCNNGG 5 cut(s) 196, 474, 492, 534, 578
BssMI GATC 1 cut(s) 782
BssNI GRCGYC 1 cut(s) 1032
BssT1I CCWWGG 3 cut(s) 474, 492, 534
Bst2UI CCWGG 2 cut(s) 198, 579
Bst4CI ACNGT 1 cut(s) 523
BstACI GRCGYC 1 cut(s) 1032
BstAUI TGTACA 1 cut(s) 596
BstBAI YACGTR 1 cut(s) 676
BstC8I GCNNGC 2 cut(s) 31, 685
BstDEI CTNAG 3 cut(s) 249, 823, 1036
BstDSI CCRYGG 1 cut(s) 534
BstENI CCTNNNNNAGG 1 cut(s) 702
BstF5I GGATG 6 cut(s) 370, 488, 553, 873, 940, 1029
BstFNI CGCG 2 cut(s) 72, 1069
BstHHI GCGC 2 cut(s) 486, 1071
BstKTI GATC 1 cut(s) 785
BstMAI GTCTC 3 cut(s) 106, 507, 635
BstMBI GATC 1 cut(s) 782
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstNI CCWGG 2 cut(s) 198, 579
BstNSI RCATGY 1 cut(s) 848
BstSCI CCNGG 3 cut(s) 196, 577, 1011
BstSFI CTRYAG 1 cut(s) 645
BstUI CGCG 2 cut(s) 72, 1069
BstV1I GCAGC 1 cut(s) 967
BstX2I RGATCY 1 cut(s) 782
BstXI CCANNNNNNTGG 1 cut(s) 535
BstYI RGATCY 1 cut(s) 782
BsuRI GGCC 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 534
BtsCI GGATG 6 cut(s) 370, 488, 553, 873, 940, 1029
BveI ACCTGC 1 cut(s) 39
Cac8I GCNNGC 2 cut(s) 31, 685
CfoI GCGC 2 cut(s) 486, 1071
CseI GACGC 2 cut(s) 233, 1021
Csp6I GTAC 3 cut(s) 276, 524, 597
CviAII CATG 5 cut(s) 7, 136, 535, 605, 845
CviQI GTAC 3 cut(s) 276, 524, 597
DdeI CTNAG 3 cut(s) 249, 823, 1036
DpnI GATC 1 cut(s) 784
DpnII GATC 1 cut(s) 782
DraI TTTAAA 1 cut(s) 951
EaeI YGGCCR 1 cut(s) 31
Eco130I CCWWGG 3 cut(s) 474, 492, 534
Eco31I GGTCTC 1 cut(s) 507
Eco72I CACGTG 1 cut(s) 676
Eco88I CYCGRG 1 cut(s) 564
EcoNI CCTNNNNNAGG 1 cut(s) 702
EcoRII CCWGG 2 cut(s) 196, 577
EcoT14I CCWWGG 3 cut(s) 474, 492, 534
ErhI CCWWGG 3 cut(s) 474, 492, 534
FaeI CATG 5 cut(s) 10, 139, 538, 608, 848
FalI AAGNNNNNCTT 2 cut(s) 1019, 1051
FatI CATG 5 cut(s) 6, 135, 534, 604, 844
Fnu4HI GCNGC 1 cut(s) 981
FokI GGATG 6 cut(s) 377, 475, 540, 880, 947, 1036
Fsp4HI GCNGC 1 cut(s) 981
FspBI CTAG 3 cut(s) 132, 684, 734
GlaI GCGC 2 cut(s) 485, 1070
GluI GCNGC 1 cut(s) 981
GsuI CTGGAG 2 cut(s) 423, 489
HaeIII GGCC 1 cut(s) 33
HapII CCGG 2 cut(s) 885, 1012
HgaI GACGC 2 cut(s) 233, 1021
HhaI GCGC 2 cut(s) 486, 1071
Hin1I GRCGYC 1 cut(s) 1032
Hin1II CATG 5 cut(s) 10, 139, 538, 608, 848
Hin6I GCGC 2 cut(s) 484, 1069
HinP1I GCGC 2 cut(s) 484, 1069
HincII GTYRAC 2 cut(s) 322, 901
HindII GTYRAC 2 cut(s) 322, 901
HindIII AAGCTT 1 cut(s) 636
HinfI GANTC 1 cut(s) 10
HpaII CCGG 2 cut(s) 885, 1012
HphI GGTGA 4 cut(s) 458, 554, 626, 654
Hpy166II GTNNAC 5 cut(s) 174, 322, 545, 662, 901
Hpy188I TCNGA 4 cut(s) 86, 787, 826, 967
Hpy188III TCNNGA 5 cut(s) 155, 381, 440, 506, 989
Hpy8I GTNNAC 5 cut(s) 174, 322, 545, 662, 901
Hpy99I CGWCG 1 cut(s) 961
HpyAV CCTTC 5 cut(s) 355, 443, 675, 805, 1021
HpyCH4III ACNGT 1 cut(s) 523
HpyCH4IV ACGT 2 cut(s) 547, 675
HpyCH4V TGCA 7 cut(s) 48, 232, 553, 694, 871, 881, 983
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpyF3I CTNAG 3 cut(s) 249, 823, 1036
HpySE526I ACGT 2 cut(s) 547, 675
Hsp92I GRCGYC 1 cut(s) 1032
Hsp92II CATG 5 cut(s) 10, 139, 538, 608, 848
HspAI GCGC 2 cut(s) 484, 1069
Kzo9I GATC 1 cut(s) 782
Lsp1109I GCAGC 1 cut(s) 967
LweI GCATC 4 cut(s) 277, 562, 659, 858
MaeI CTAG 3 cut(s) 132, 684, 734
MaeII ACGT 2 cut(s) 547, 675
MalI GATC 1 cut(s) 784
MboI GATC 1 cut(s) 782
MboII GAAGA 5 cut(s) 396, 462, 660, 902, 931
MfeI CAATTG 1 cut(s) 233
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 1 cut(s) 565
MlsI TGGCCA 1 cut(s) 33
MluCI AATT 4 cut(s) 233, 479, 952, 984
MluNI TGGCCA 1 cut(s) 33
MmeI TCCRAC 2 cut(s) 497, 760
Mox20I TGGCCA 1 cut(s) 33
MscI TGGCCA 1 cut(s) 33
MseI TTAA 5 cut(s) 224, 417, 849, 950, 1017
MslI CAYNNNNRTG 2 cut(s) 533, 558
Msp20I TGGCCA 1 cut(s) 33
MspI CCGG 2 cut(s) 885, 1012
MspR9I CCNGG 3 cut(s) 198, 579, 1013
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 2 cut(s) 50, 1053
MvaI CCWGG 2 cut(s) 198, 579
MvnI CGCG 2 cut(s) 72, 1069
MwoI GCNNNNNNNGC 1 cut(s) 12
NciI CCSGG 1 cut(s) 1013
NcoI CCATGG 1 cut(s) 534
NdeII GATC 1 cut(s) 782
NheI GCTAGC 1 cut(s) 683
NlaIII CATG 5 cut(s) 10, 139, 538, 608, 848
NlaIV GGNNCC 2 cut(s) 83, 784
NspI RCATGY 1 cut(s) 848
PaeR7I CTCGAG 1 cut(s) 564
PctI GAATGC 2 cut(s) 50, 1053
PfeI GAWTC 1 cut(s) 10
PflFI GACNNNGTC 1 cut(s) 961
PflMI CCANNNNNTGG 2 cut(s) 512, 610
PkrI GCNGC 1 cut(s) 982
PmaCI CACGTG 1 cut(s) 676
PmlI CACGTG 1 cut(s) 676
Ppu21I YACGTR 1 cut(s) 676
Psp6I CCWGG 2 cut(s) 196, 577
PspCI CACGTG 1 cut(s) 676
PspGI CCWGG 2 cut(s) 196, 577
PspN4I GGNNCC 2 cut(s) 83, 784
PspXI VCTCGAGB 1 cut(s) 564
PsuI RGATCY 1 cut(s) 782
PsyI GACNNNGTC 1 cut(s) 961
RsaI GTAC 3 cut(s) 277, 525, 598
RsaNI GTAC 3 cut(s) 276, 524, 597
RseI CAYNNNNRTG 2 cut(s) 533, 558
SaqAI TTAA 5 cut(s) 224, 417, 849, 950, 1017
SatI GCNGC 1 cut(s) 981
Sau3AI GATC 1 cut(s) 782
ScrFI CCNGG 3 cut(s) 198, 579, 1013
SduI GDGCHC 1 cut(s) 565
SfaNI GCATC 4 cut(s) 277, 562, 659, 858
SfcI CTRYAG 1 cut(s) 645
Sfr274I CTCGAG 1 cut(s) 564
SlaI CTCGAG 1 cut(s) 564
SmiMI CAYNNNNRTG 2 cut(s) 533, 558
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 4 cut(s) 233, 479, 952, 984
SsiI CCGC 1 cut(s) 72
SspI AATATT 1 cut(s) 399
SspMI CTAG 3 cut(s) 132, 684, 734
StyD4I CCNGG 3 cut(s) 196, 577, 1011
StyI CCWWGG 3 cut(s) 474, 492, 534
TaaI ACNGT 1 cut(s) 523
TaiI ACGT 2 cut(s) 550, 678
TaqI TCGA 2 cut(s) 565, 956
TasI AATT 4 cut(s) 233, 479, 952, 984
TatI WGTACW 2 cut(s) 275, 596
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 5 cut(s) 224, 417, 849, 950, 1017
Tru9I TTAA 5 cut(s) 224, 417, 849, 950, 1017
TseI GCWGC 1 cut(s) 980
TspDTI ATGAA 7 cut(s) 23, 174, 477, 587, 633, 941, 1040
TspGWI ACGGA 3 cut(s) 120, 767, 947
Tth111I GACNNNGTC 1 cut(s) 961
Van91I CCANNNNNTGG 2 cut(s) 512, 610
XagI CCTNNNNNAGG 1 cut(s) 702
XapI RAATTY 1 cut(s) 952
XceI RCATGY 1 cut(s) 848
XcmI CCANNNNNNNNNTGG 3 cut(s) 304, 495, 513
XhoI CTCGAG 1 cut(s) 564
XspI CTAG 3 cut(s) 132, 684, 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.