Rh5DG375800

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000683
Physical Location & Seq
Reverse (-)
57094119 .. 57103357
9239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG375800.1

Sequence Viewer

Length: 1065 bp
ATGGCCCTGCATAACCTACCATTTAAAGTTGGACAGGACATAGAATCGAGATCCTTTCTGAAAGGTTATCGTGGTGCGTGGTTCCGATGTAAGATAAAAGATATTGGCTGGAGAAATGGTCAGCTGTCGTGTGCTTTGGAATATTATGACTTTCCAGATGAAAAAATAGCTTGGGAGAAGATATATCAAAACAACCCTGCTGATGGTAAAAGGACAAGAAAGGGGAAGACATTGATGATACGTCCTCCCTTTCCTCCTATCTATCGTGAAAGTAAAAGGCCTGATGTCAATACCATATTGGAAGTGATAGTTATAGTCAATGATGCCTGGAAAGTGGGAGATTTAGTTGATTGGTGGAAGGATGGTTGTTATTGGTCTGGAAAAGTAGCAGAAGTATTAGGGGATGAAACAGTGAAGGTTGAGTTGCCACGTCCTCCTGTCGGTGAAGGAGTTGAAGGAGAGATGTATGAGGCTTCTTACAAGGACCTGCGCTCATCCTTGGATTGGTCTCTAGAATATGGATGGACAGTACCTACACCCAAGGAGAGAGAAAATGGGCATCCTTGTGTTCAAGTAATTAAGCCTGATAATCAAGGAGACATTCCAAGTGTGGTGGCCCAAACTGTAGGTGATGAAAGAAGAGATGTACATGCAATTGCTGGTGCAGATCAATCTTTAGCAGCAAAGGACCCAGCCACTGCAGAAACAAATATGGAGTCTGATGTAGCAGATAGCCTTTTTGGGAAGATGAGTTGCTCAGATAGTGGTTCAAGTTCGCATGTGAAAGATGCATTAAATAAAATGGGGGGAACTGCAACTAGGATAGACATAGTTGATAACGATAGGTCCTTGAAGAAGATGAAAACTGACGAAGGCATAATATTGAATTCGATGAGCTCTGATACATTAGAAGCTGCAATTTTGGACTTGGAGGAACTTGTAAACCGGGTTAAATGGATGAAAGGTATGTTGGAGACTGGAATGCCTTTGACAGGTGCCATGCACCCCCATTGGAAATTTCTTGGAAATCATACCGCGTCCACGCCAAGTGAAGGTTTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

354

Amino Acids

39.55

Weight (kDa)

5.41

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 11 - 85 6.7e-09 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 995
AccII CGCG 1 cut(s) 1037
AciI CCGC 1 cut(s) 1035
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 2 cut(s) 886, 1016
AfaI GTAC 2 cut(s) 531, 648
AfiI CCNNNNNNNGG 5 cut(s) 203, 440, 504, 992, 1052
AgsI TTSAA 5 cut(s) 455, 572, 771, 853, 886
AjiI CACGTC 1 cut(s) 431
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 953, 985
AluBI AGCT 4 cut(s) 124, 170, 897, 914
AluI AGCT 4 cut(s) 124, 170, 897, 914
Alw21I GWGCWC 1 cut(s) 899
Alw26I GTCTC 3 cut(s) 513, 591, 968
AlwI GGATC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 698
AoxI GGCC 3 cut(s) 3, 278, 615
ApeKI GCWGC 2 cut(s) 680, 914
ApoI RAATTY 2 cut(s) 886, 1016
ArsI GACNNNNNNTTYG 2 cut(s) 701, 733
Asp700I GAANNNNTTC 1 cut(s) 1056
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 5 cut(s) 4, 484, 616, 688, 846
AsuC2I CCSGG 1 cut(s) 947
AsuHPI GGTGA 2 cut(s) 455, 641
AvaII GGWCC 3 cut(s) 484, 688, 846
BanI GGYRCC 1 cut(s) 995
BanII GRGCYC 1 cut(s) 899
BbsI GAAGAC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 899
BbvI GCAGC 2 cut(s) 692, 901
BccI CCATC 3 cut(s) 197, 356, 516
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 1 cut(s) 947
BcoDI GTCTC 3 cut(s) 513, 591, 968
BfaI CTAG 3 cut(s) 512, 819, 1063
BfmI CTRYAG 2 cut(s) 624, 699
BfuAI ACCTGC 1 cut(s) 495
BisI GCNGC 2 cut(s) 681, 915
BlsI GCNGC 2 cut(s) 682, 916
Bme1390I CCNGG 2 cut(s) 328, 947
Bme18I GGWCC 3 cut(s) 484, 688, 846
BmgBI CACGTC 1 cut(s) 431
BmgT120I GGNCC 5 cut(s) 4, 484, 616, 688, 846
BmiI GGNNCC 3 cut(s) 83, 690, 997
BmrFI CCNGG 2 cut(s) 328, 947
BmsI GCATC 3 cut(s) 313, 568, 778
BpiI GAAGAC 1 cut(s) 233
BpmI CTGGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 947
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 2 cut(s) 498, 540
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 330, 360
Bsc4I CCNNNNNNNGG 5 cut(s) 203, 440, 504, 992, 1052
Bse1I ACTGG 1 cut(s) 982
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 498, 540
BseGI GGATG 6 cut(s) 367, 409, 494, 527, 559, 963
BseLI CCNNNNNNNGG 5 cut(s) 203, 440, 504, 992, 1052
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 1 cut(s) 982
BseXI GCAGC 2 cut(s) 692, 901
BseYI CCCAGC 1 cut(s) 691
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 1 cut(s) 1037
BshFI GGCC 3 cut(s) 5, 280, 617
BshNI GGYRCC 1 cut(s) 995
BsiHKAI GWGCWC 1 cut(s) 899
BsiSI CCGG 1 cut(s) 946
BslI CCNNNNNNNGG 5 cut(s) 203, 440, 504, 992, 1052
BsmAI GTCTC 3 cut(s) 513, 591, 968
BsmI GAATGC 1 cut(s) 987
BsnI GGCC 3 cut(s) 5, 280, 617
Bso31I GGTCTC 1 cut(s) 513
Bsp1286I GDGCHC 1 cut(s) 899
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 2 cut(s) 50, 667
BspACI CCGC 1 cut(s) 1035
BspANI GGCC 3 cut(s) 5, 280, 617
BspCNI CTCAG 1 cut(s) 770
BspFNI CGCG 1 cut(s) 1037
BspLI GGNNCC 3 cut(s) 83, 690, 997
BspMAI CTGCAG 1 cut(s) 703
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 995
BspTNI GGTCTC 1 cut(s) 513
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 1 cut(s) 982
BssECI CCNNGG 2 cut(s) 498, 540
BssMI GATC 2 cut(s) 50, 667
BssT1I CCWWGG 2 cut(s) 498, 540
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 412, 529, 625
Bst6I CTCTTC 1 cut(s) 634
BstAUI TGTACA 1 cut(s) 646
BstDEI CTNAG 1 cut(s) 757
BstENI CCTNNNNNAGG 1 cut(s) 990
BstF5I GGATG 6 cut(s) 367, 409, 494, 527, 559, 963
BstFNI CGCG 1 cut(s) 1037
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 2 cut(s) 53, 670
BstMAI GTCTC 3 cut(s) 513, 591, 968
BstMBI GATC 2 cut(s) 50, 667
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 2 cut(s) 653, 782
BstSCI CCNGG 2 cut(s) 326, 945
BstSFI CTRYAG 2 cut(s) 624, 699
BstUI CGCG 1 cut(s) 1037
BstV1I GCAGC 2 cut(s) 692, 901
BstV2I GAAGAC 1 cut(s) 233
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 3 cut(s) 5, 280, 617
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 6 cut(s) 367, 409, 494, 527, 559, 963
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 2 cut(s) 417, 696
BveI ACCTGC 1 cut(s) 495
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 1 cut(s) 492
Cfr13I GGNCC 5 cut(s) 4, 484, 616, 688, 846
CseI GACGC 1 cut(s) 1026
Csp6I GTAC 2 cut(s) 530, 647
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 3 cut(s) 650, 779, 1000
CviQI GTAC 2 cut(s) 530, 647
DdeI CTNAG 1 cut(s) 757
DpnI GATC 2 cut(s) 52, 669
DpnII GATC 2 cut(s) 50, 667
DraI TTTAAA 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
Ecl136II GAGCTC 1 cut(s) 897
Eco130I CCWWGG 2 cut(s) 498, 540
Eco147I AGGCCT 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 899
Eco31I GGTCTC 1 cut(s) 513
Eco47I GGWCC 3 cut(s) 484, 688, 846
Eco53kI GAGCTC 1 cut(s) 897
EcoICRI GAGCTC 1 cut(s) 897
EcoNI CCTNNNNNAGG 1 cut(s) 990
EcoO109I RGGNCCY 3 cut(s) 484, 688, 846
EcoRI GAATTC 1 cut(s) 886
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 498, 540
EcoT22I ATGCAT 1 cut(s) 793
EcoT38I GRGCYC 1 cut(s) 899
ErhI CCWWGG 2 cut(s) 498, 540
FaeI CATG 3 cut(s) 653, 782, 1003
FatI CATG 3 cut(s) 649, 778, 999
Fnu4HI GCNGC 2 cut(s) 681, 915
FokI GGATG 6 cut(s) 374, 416, 481, 534, 546, 970
FriOI GRGCYC 1 cut(s) 899
Fsp4HI GCNGC 2 cut(s) 681, 915
FspBI CTAG 3 cut(s) 512, 819, 1063
GlaI GCGC 1 cut(s) 491
GluI GCNGC 2 cut(s) 681, 915
GsaI CCCAGC 1 cut(s) 695
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 5, 280, 617
HapII CCGG 1 cut(s) 946
HgaI GACGC 1 cut(s) 1026
HhaI GCGC 1 cut(s) 492
Hin1II CATG 3 cut(s) 653, 782, 1003
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HinfI GANTC 2 cut(s) 44, 716
HpaII CCGG 1 cut(s) 946
HphI GGTGA 2 cut(s) 455, 641
Hpy166II GTNNAC 2 cut(s) 943, 1041
Hpy188I TCNGA 5 cut(s) 60, 86, 721, 760, 901
Hpy188III TCNNGA 5 cut(s) 48, 155, 266, 378, 512
Hpy8I GTNNAC 2 cut(s) 943, 1041
HpyAV CCTTC 6 cut(s) 352, 409, 440, 449, 866, 1046
HpyCH4III ACNGT 3 cut(s) 412, 529, 625
HpyCH4IV ACGT 2 cut(s) 241, 430
HpyCH4V TGCA 8 cut(s) 10, 653, 665, 701, 791, 815, 917, 1003
HpyF3I CTNAG 1 cut(s) 757
HpySE526I ACGT 2 cut(s) 241, 430
Hsp92II CATG 3 cut(s) 653, 782, 1003
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 2 cut(s) 50, 667
Lsp1109I GCAGC 2 cut(s) 692, 901
LweI GCATC 3 cut(s) 313, 568, 778
MaeI CTAG 3 cut(s) 512, 819, 1063
MaeII ACGT 2 cut(s) 241, 430
MalI GATC 2 cut(s) 52, 669
MboI GATC 2 cut(s) 50, 667
MboII GAAGA 6 cut(s) 190, 238, 651, 757, 865, 868
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 899
MluCI AATT 5 cut(s) 576, 654, 886, 918, 1016
MlyI GAGTC 1 cut(s) 725
MmeI TCCRAC 2 cut(s) 10, 951
MnlI CCTC 5 cut(s) 255, 264, 444, 463, 925
Mph1103I ATGCAT 1 cut(s) 793
MroXI GAANNNNTTC 1 cut(s) 1056
MseI TTAA 4 cut(s) 24, 579, 794, 951
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 1 cut(s) 946
MspR9I CCNGG 2 cut(s) 328, 947
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 987
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 1 cut(s) 1037
NciI CCSGG 1 cut(s) 947
NdeII GATC 2 cut(s) 50, 667
NlaIII CATG 3 cut(s) 653, 782, 1003
NlaIV GGNNCC 3 cut(s) 83, 690, 997
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 2 cut(s) 653, 782
PceI AGGCCT 1 cut(s) 280
PctI GAATGC 1 cut(s) 987
PdmI GAANNNNTTC 1 cut(s) 1056
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 682, 916
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
PpuMI RGGWCCY 3 cut(s) 484, 688, 846
Psp124BI GAGCTC 1 cut(s) 899
Psp5II RGGWCCY 3 cut(s) 484, 688, 846
Psp6I CCWGG 1 cut(s) 326
PspFI CCCAGC 1 cut(s) 691
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 83, 690, 997
PspPI GGNCC 5 cut(s) 4, 484, 616, 688, 846
PspPPI RGGWCCY 3 cut(s) 484, 688, 846
PstI CTGCAG 1 cut(s) 703
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 2 cut(s) 531, 648
RsaNI GTAC 2 cut(s) 530, 647
RseI CAYNNNNRTG 1 cut(s) 564
SacI GAGCTC 1 cut(s) 899
SaqAI TTAA 4 cut(s) 24, 579, 794, 951
SatI GCNGC 2 cut(s) 681, 915
Sau3AI GATC 2 cut(s) 50, 667
Sau96I GGNCC 5 cut(s) 4, 484, 616, 688, 846
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 2 cut(s) 328, 947
SduI GDGCHC 1 cut(s) 899
SfaNI GCATC 3 cut(s) 313, 568, 778
SfcI CTRYAG 2 cut(s) 624, 699
SinI GGWCC 3 cut(s) 484, 688, 846
SmiMI CAYNNNNRTG 1 cut(s) 564
Sse9I AATT 5 cut(s) 576, 654, 886, 918, 1016
SseBI AGGCCT 1 cut(s) 280
SsiI CCGC 1 cut(s) 1035
SspI AATATT 2 cut(s) 143, 882
SspMI CTAG 3 cut(s) 512, 819, 1063
SstI GAGCTC 1 cut(s) 899
StuI AGGCCT 1 cut(s) 280
StyD4I CCNGG 2 cut(s) 326, 945
StyI CCWWGG 2 cut(s) 498, 540
TaaI ACNGT 3 cut(s) 412, 529, 625
TaiI ACGT 2 cut(s) 244, 433
TaqI TCGA 2 cut(s) 47, 890
TasI AATT 5 cut(s) 576, 654, 886, 918, 1016
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 4 cut(s) 24, 579, 794, 951
Tru9I TTAA 4 cut(s) 24, 579, 794, 951
TscAI CASTG 2 cut(s) 417, 703
TseI GCWGC 2 cut(s) 680, 914
TspDTI ATGAA 5 cut(s) 174, 420, 648, 875, 974
TspRI CASTG 2 cut(s) 417, 703
VpaK11BI GGWCC 3 cut(s) 484, 688, 846
XagI CCTNNNNNAGG 1 cut(s) 990
XapI RAATTY 2 cut(s) 886, 1016
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 2 cut(s) 653, 782
XmnI GAANNNNTTC 1 cut(s) 1056
XspI CTAG 3 cut(s) 512, 819, 1063
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.