FvH4_3g28990

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000683
Physical Location & Seq
Reverse (-)
22095887 .. 22103156
7270 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28990.t7

Sequence Viewer

Length: 1050 bp
ATGGCCCTGCATACTCTACCATTTAAAGTTGGACAGGACGTGGAAACAAGATCGTTTCTGAAAGGCTTTCGTGGTGCGTGGTTCCGGTGTAAGATAATAGATATTGGCTGGAGAAATGGTCAGCTGTCATGTGCTTTGAAGTATTATGACTTTCCAGATGAAAAAATAACTTGGGAGAAAATATATCAACACAACCCTGCTGATGGTAAGAGGAAAAGAAAGGCGAACATGTTGATGATGCGTCCTCCCTTTCCTTCTATCTATCATGAAAGTAAAAGGCCGGATGCCAATACCATATTGCAAGCGGTAGTTGTTGTCAGTGATGCCTGGAAAGTTGGAGATTTAGTTGATTGGTGGAAAGATGGTTGTTATTGGTCCGGAAAAGTAACAGAAGTATTAGGGCATAAAAAGTTGAAGGTTGAGTTGCCGCTTCCTCCTGTTGGTGAAGGAGTTAAAGGACAGACTTACGAGGCTTCTTACAAGGACCTACGCTCATCCTTGAATTGGTCTCTAGAATATGGTTGGACAGTACCTACACCCAAGGAGAGGGAAAATGGGCATCCATGTGTACGAGTAATAAAGCCTGATAATCAAGGAGACATTCCAAGTTTAGCGGCCCAAACTGTGGATGAAGGAAAAAGAGATGTGCAGGAAATTGCTAATGCTGATCAATCTTTAACAGCAAAAGATATAGTCACTGCAGAAACAAATATGGAATCTGATGTAGCAGATAGTCGATTTGAGAAGAGTTGCTCATATAGCGGTTTCAGTTCGCATATTAAAGACGCATTGAATAATACGGGGGGAACTGCAACTAGGATAGACATAGTTGATAATGGTAGATCTTTCAAGAGGATGAAAGCTGATGAAGGCATAATATTAAATCCAGTGAGCTCTGATACATTAGAAGCTGCAATTTTGGACTTAGAGGAACTTGTAAACCGGATTAAATGGATGAAGGGGATGTTGGAGATTGGAATGCCTTTCACGGGTGCTATGCGCCCCCGTTGGAAATTTCTAAAAAATCATACCTCGCCCACTCCAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

350

Amino Acids

39.45

Weight (kDa)

8.61

Isoelectric Point (pI)

33.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 625
AccIII TCCGGA 1 cut(s) 377
AciI CCGC 4 cut(s) 305, 428, 614, 762
AcsI RAATTY 1 cut(s) 1013
AfaI GTAC 2 cut(s) 531, 570
AfiI CCNNNNNNNGG 6 cut(s) 203, 440, 504, 546, 625, 989
AflIII ACRYGT 1 cut(s) 228
AgsI TTSAA 5 cut(s) 139, 415, 502, 793, 850
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 950, 982
AluBI AGCT 4 cut(s) 124, 863, 894, 911
AluI AGCT 4 cut(s) 124, 863, 894, 911
Alw21I GWGCWC 1 cut(s) 896
Alw26I GTCTC 2 cut(s) 513, 591
Aor13HI TCCGGA 1 cut(s) 377
AoxI GGCC 3 cut(s) 3, 278, 615
ApeKI GCWGC 1 cut(s) 911
ApoI RAATTY 1 cut(s) 1013
AspLEI GCGC 1 cut(s) 1002
AspS9I GGNCC 4 cut(s) 4, 375, 484, 616
AsuHPI GGTGA 1 cut(s) 455
AvaII GGWCC 2 cut(s) 375, 484
BanII GRGCYC 1 cut(s) 896
Bbv12I GWGCWC 1 cut(s) 896
BbvI GCAGC 1 cut(s) 898
BccI CCATC 2 cut(s) 197, 356
BciT130I CCWGG 1 cut(s) 328
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 2 cut(s) 513, 591
BfaI CTAG 2 cut(s) 512, 816
BfmI CTRYAG 1 cut(s) 699
BglII AGATCT 1 cut(s) 842
BisI GCNGC 3 cut(s) 428, 615, 912
BlsI GCNGC 3 cut(s) 429, 616, 913
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 2 cut(s) 375, 484
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 4 cut(s) 4, 375, 484, 616
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 4 cut(s) 228, 274, 313, 568
BpmI CTGGAG 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 1 cut(s) 540
BsaWI WCCGGW 3 cut(s) 84, 377, 942
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 330, 360
Bsc4I CCNNNNNNNGG 6 cut(s) 203, 440, 504, 546, 625, 989
Bse1I ACTGG 1 cut(s) 887
BseAI TCCGGA 1 cut(s) 377
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 540
BseGI GGATG 7 cut(s) 289, 494, 559, 634, 861, 960, 969
BseLI CCNNNNNNNGG 6 cut(s) 203, 440, 504, 546, 625, 989
BseNI ACTGG 1 cut(s) 887
BseXI GCAGC 1 cut(s) 898
BsgI GTGCAG 1 cut(s) 668
BshFI GGCC 3 cut(s) 5, 280, 617
BsiHKAI GWGCWC 1 cut(s) 896
BsiSI CCGG 4 cut(s) 85, 281, 378, 943
BslI CCNNNNNNNGG 6 cut(s) 203, 440, 504, 546, 625, 989
BsmAI GTCTC 2 cut(s) 513, 591
BsmI GAATGC 1 cut(s) 984
BsnI GGCC 3 cut(s) 5, 280, 617
Bso31I GGTCTC 1 cut(s) 513
Bsp1286I GDGCHC 1 cut(s) 896
Bsp13I TCCGGA 1 cut(s) 377
Bsp143I GATC 3 cut(s) 50, 667, 842
BspACI CCGC 4 cut(s) 305, 428, 614, 762
BspANI GGCC 3 cut(s) 5, 280, 617
BspEI TCCGGA 1 cut(s) 377
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 1 cut(s) 83
BspMAI CTGCAG 1 cut(s) 703
BspTNI GGTCTC 1 cut(s) 513
BsrI ACTGG 1 cut(s) 887
BssECI CCNNGG 1 cut(s) 540
BssMI GATC 3 cut(s) 50, 667, 842
BssT1I CCWWGG 1 cut(s) 540
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 529, 625
Bst6I CTCTTC 1 cut(s) 740
BstC8I GCNNGC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 925
BstF5I GGATG 7 cut(s) 289, 494, 559, 634, 861, 960, 969
BstHHI GCGC 1 cut(s) 1002
BstKTI GATC 3 cut(s) 53, 670, 845
BstMAI GTCTC 2 cut(s) 513, 591
BstMBI GATC 3 cut(s) 50, 667, 842
BstMWI GCNNNNNNNGC 1 cut(s) 759
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 699
BstV1I GCAGC 1 cut(s) 898
BstX2I RGATCY 1 cut(s) 842
BstYI RGATCY 1 cut(s) 842
BsuRI GGCC 3 cut(s) 5, 280, 617
BtrI CACGTC 1 cut(s) 40
BtsCI GGATG 7 cut(s) 289, 494, 559, 634, 861, 960, 969
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 3 cut(s) 325, 696, 894
Cac8I GCNNGC 1 cut(s) 303
CciI TCATGA 1 cut(s) 265
CfoI GCGC 1 cut(s) 1002
Cfr13I GGNCC 4 cut(s) 4, 375, 484, 616
CseI GACGC 2 cut(s) 230, 794
Csp6I GTAC 2 cut(s) 530, 569
CviAII CATG 4 cut(s) 129, 229, 266, 564
CviQI GTAC 2 cut(s) 530, 569
DdeI CTNAG 1 cut(s) 925
DpnI GATC 3 cut(s) 52, 669, 844
DpnII GATC 3 cut(s) 50, 667, 842
DraI TTTAAA 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 740
EarI CTCTTC 1 cut(s) 740
Ecl136II GAGCTC 1 cut(s) 894
Eco130I CCWWGG 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 896
Eco31I GGTCTC 1 cut(s) 513
Eco47I GGWCC 2 cut(s) 375, 484
Eco53kI GAGCTC 1 cut(s) 894
EcoICRI GAGCTC 1 cut(s) 894
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 540
EcoT38I GRGCYC 1 cut(s) 896
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 4 cut(s) 132, 232, 269, 567
FatI CATG 4 cut(s) 128, 228, 265, 563
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 3 cut(s) 428, 615, 912
FokI GGATG 7 cut(s) 296, 481, 546, 641, 868, 967, 976
FriOI GRGCYC 1 cut(s) 896
Fsp4HI GCNGC 3 cut(s) 428, 615, 912
FspBI CTAG 2 cut(s) 512, 816
GlaI GCGC 1 cut(s) 1001
GluI GCNGC 3 cut(s) 428, 615, 912
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 5, 280, 617
HapII CCGG 4 cut(s) 85, 281, 378, 943
HgaI GACGC 2 cut(s) 230, 794
HhaI GCGC 1 cut(s) 1002
Hin1II CATG 4 cut(s) 132, 232, 269, 567
Hin6I GCGC 1 cut(s) 1000
HinP1I GCGC 1 cut(s) 1000
HinfI GANTC 1 cut(s) 716
HpaII CCGG 4 cut(s) 85, 281, 378, 943
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 2 cut(s) 569, 940
Hpy188I TCNGA 3 cut(s) 60, 721, 898
Hpy188III TCNNGA 5 cut(s) 155, 266, 378, 512, 850
Hpy8I GTNNAC 2 cut(s) 569, 940
HpyAV CCTTC 6 cut(s) 264, 409, 440, 626, 863, 952
HpyCH4III ACNGT 2 cut(s) 529, 625
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 6 cut(s) 10, 301, 649, 701, 812, 914
HpyF10VI GCNNNNNNNGC 1 cut(s) 759
HpyF3I CTNAG 1 cut(s) 925
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 4 cut(s) 132, 232, 269, 567
HspAI GCGC 1 cut(s) 1000
Kpn2I TCCGGA 1 cut(s) 377
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 3 cut(s) 50, 667, 842
Lsp1109I GCAGC 1 cut(s) 898
LweI GCATC 4 cut(s) 228, 274, 313, 568
MaeI CTAG 2 cut(s) 512, 816
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 2 cut(s) 385, 694
MalI GATC 3 cut(s) 52, 669, 844
MboI GATC 3 cut(s) 50, 667, 842
MboII GAAGA 1 cut(s) 757
MflI RGATCY 1 cut(s) 842
MhlI GDGCHC 1 cut(s) 896
MluCI AATT 4 cut(s) 502, 654, 915, 1013
MmeI TCCRAC 5 cut(s) 10, 316, 503, 948, 989
MnlI CCTC 8 cut(s) 204, 255, 444, 463, 540, 846, 922, 1042
MroI TCCGGA 1 cut(s) 377
MseI TTAA 6 cut(s) 24, 453, 677, 780, 881, 948
MslI CAYNNNNRTG 2 cut(s) 233, 564
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 4 cut(s) 85, 281, 378, 943
MspR9I CCNGG 1 cut(s) 328
Mva1269I GAATGC 1 cut(s) 984
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 1 cut(s) 759
NdeII GATC 3 cut(s) 50, 667, 842
NlaIII CATG 4 cut(s) 132, 232, 269, 567
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 694
NspI RCATGY 1 cut(s) 232
PagI TCATGA 1 cut(s) 265
PciI ACATGT 1 cut(s) 228
PctI GAATGC 1 cut(s) 984
PfeI GAWTC 1 cut(s) 716
PflMI CCANNNNNTGG 1 cut(s) 625
PkrI GCNGC 3 cut(s) 429, 616, 913
PpuMI RGGWCCY 1 cut(s) 484
PscI ACATGT 1 cut(s) 228
Psp124BI GAGCTC 1 cut(s) 896
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 4 cut(s) 4, 375, 484, 616
PspPPI RGGWCCY 1 cut(s) 484
PstI CTGCAG 1 cut(s) 703
PsuI RGATCY 1 cut(s) 842
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 2 cut(s) 531, 570
RsaNI GTAC 2 cut(s) 530, 569
RseI CAYNNNNRTG 2 cut(s) 233, 564
SacI GAGCTC 1 cut(s) 896
SaqAI TTAA 6 cut(s) 24, 453, 677, 780, 881, 948
SatI GCNGC 3 cut(s) 428, 615, 912
Sau3AI GATC 3 cut(s) 50, 667, 842
Sau96I GGNCC 4 cut(s) 4, 375, 484, 616
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 896
SetI ASST 9 cut(s) 42, 126, 420, 489, 535, 865, 896, 913, 1034
SfaNI GCATC 4 cut(s) 228, 274, 313, 568
SfcI CTRYAG 1 cut(s) 699
SinI GGWCC 2 cut(s) 375, 484
SmiMI CAYNNNNRTG 2 cut(s) 233, 564
Sse9I AATT 4 cut(s) 502, 654, 915, 1013
SsiI CCGC 4 cut(s) 305, 428, 614, 762
SspI AATATT 1 cut(s) 879
SspMI CTAG 2 cut(s) 512, 816
SstI GAGCTC 1 cut(s) 896
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 2 cut(s) 529, 625
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 736
TasI AATT 4 cut(s) 502, 654, 915, 1013
TauI GCSGC 2 cut(s) 430, 617
TfiI GAWTC 1 cut(s) 716
Tru1I TTAA 6 cut(s) 24, 453, 677, 780, 881, 948
Tru9I TTAA 6 cut(s) 24, 453, 677, 780, 881, 948
TscAI CASTG 3 cut(s) 325, 703, 894
TseFI GTSAC 1 cut(s) 694
TseI GCWGC 1 cut(s) 911
Tsp45I GTSAC 1 cut(s) 694
TspDTI ATGAA 6 cut(s) 174, 282, 645, 872, 882, 971
TspRI CASTG 3 cut(s) 325, 703, 894
Van91I CCANNNNNTGG 1 cut(s) 625
VpaK11BI GGWCC 2 cut(s) 375, 484
XapI RAATTY 1 cut(s) 1013
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 1 cut(s) 232
XspI CTAG 2 cut(s) 512, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.