RchiOBHm_Chr5g0051721

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000683
Physical Location & Seq
Forward (+)
53049529 .. 53058758
9230 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32917

Sequence Viewer

Length: 1233 bp
ATGGCCCTGCATAACCTACCATTTAAAGTTGGACAGGACATAGAATCGAGATCCTTTCTGAAAGGCTATCGTGGTGCGTGGTTCCGATGTAAGATAAAAGATATTGGCTGGAGAAATGGTCAGCTGTCGTGTGCTTTGGAATATTATGACTTTCCAGATGAAAAAATAACTTGGGAGAAGATATATCAAAACAACCCTGCTGATGGTAAAAGGACAAGAAAGGGGAAGACATTGATGATACGTCCTCCCTTTCCTCCTATCTATCGTGAAAGTAAAAGGCCTGATGTCAATACCATATTGGAAGTGATAGTTATTGTCAATGATGCCTGGAAAGTGGGAGATTTAGTTGATTGGTGGAAGGATGGTTGTTATTGGTCTGGAAAAGTAGCACAAGTATTAGGGGATGAAACAGTGAAGGTTGAGTTGCCACGTCCTCCTGTTGGTGAAGGAGTTGAAGGAGAGATGTATGAGGCTTCTTACAAGGACCTGCGCTCATCCTTGGATTGGTCTCTAGAATATGGATGGAAAGTACCTACACCCAAGGAGAGAGAAAATGGGCATCCTTGTGTTCAAGTAATTAAGCCTGATAATCAAGGAGACATTCCAAGTGTGGTGGCCCAAACTGTAGGTGATGGAAGAAGAGATGTACAGGCAATTGCTGGTGCAGACCAATCTTTAGCAGCAAAGGACCCAGCCACTGCAGAAACAAATATGGAGTCTGATGTAGCAGATAGCCTTTTTGGGAAGACGAGTTGCTCAGATAGTGGTTCAAGTTCGCATGTGAAAGATGCATTAAATAAAATGGGGGGAACTGCAATTAGGATAGACATAGTTGATAACGATAGGTCCTTGAAGAAGATGAAAACTGACGAAGGCATAATATTGAATTCGATGAGCTCTGATACATTAGAAGCTGCAATTTTGGACTTGGAGGAACTTGTTAACCGGGTTAAATGGATGAAAGGTATGTTGGAGACTGGAATGCCTTTGACAGGTACCATGCGCCCCCATTGGAAATTTCTTGGAAATCATACCACGTCCACGCCAAGTGAAGGAAGGCAGGAGAAAACTGGACATGACAATACTTCATCTCTGTTCAATCTAGTAACTTCTAGAATTACACCTTTTCTGATGGATTTTGTGTATACCGTGATCTATAGTTGGAGATTGATGATGCTTTATCATCCTGTTCCAGCCCAAGAAGGCAAGGAGCGGCGGAGCTATCGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

410

Amino Acids

46.28

Weight (kDa)

6.07

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 11 - 85 6e-09 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 495
Acc65I GGTACC 1 cut(s) 995
AccB1I GGYRCC 1 cut(s) 995
AccBSI CCGCTC 1 cut(s) 1213
AccI GTMKAC 1 cut(s) 1145
AciI CCGC 2 cut(s) 1213, 1216
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 2 cut(s) 886, 1016
AfaI GTAC 3 cut(s) 531, 648, 997
AfiI CCNNNNNNNGG 5 cut(s) 203, 440, 504, 992, 1052
AgsI TTSAA 6 cut(s) 455, 572, 771, 853, 886, 1099
AjiI CACGTC 2 cut(s) 431, 1038
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 953, 985
AluBI AGCT 4 cut(s) 124, 897, 914, 1221
AluI AGCT 4 cut(s) 124, 897, 914, 1221
Alw21I GWGCWC 1 cut(s) 899
Alw26I GTCTC 3 cut(s) 513, 591, 968
AlwI GGATC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 698
AoxI GGCC 3 cut(s) 3, 278, 615
ApeKI GCWGC 2 cut(s) 680, 914
ApoI RAATTY 2 cut(s) 886, 1016
ArsI GACNNNNNNTTYG 2 cut(s) 701, 733
Asp718I GGTACC 1 cut(s) 995
AspLEI GCGC 2 cut(s) 492, 1005
AspS9I GGNCC 5 cut(s) 4, 484, 616, 688, 846
AsuC2I CCSGG 1 cut(s) 947
AsuHPI GGTGA 2 cut(s) 455, 641
AvaII GGWCC 3 cut(s) 484, 688, 846
BanI GGYRCC 1 cut(s) 995
BanII GRGCYC 1 cut(s) 899
BbsI GAAGAC 2 cut(s) 233, 752
Bbv12I GWGCWC 1 cut(s) 899
BbvI GCAGC 2 cut(s) 692, 901
BccI CCATC 5 cut(s) 197, 356, 516, 626, 1126
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 1 cut(s) 947
BcoDI GTCTC 3 cut(s) 513, 591, 968
BfaI CTAG 3 cut(s) 512, 1103, 1113
BfmI CTRYAG 3 cut(s) 624, 699, 1156
BfuAI ACCTGC 1 cut(s) 495
BisI GCNGC 3 cut(s) 681, 915, 1214
BlsI GCNGC 3 cut(s) 682, 916, 1215
Bme1390I CCNGG 2 cut(s) 328, 947
Bme18I GGWCC 3 cut(s) 484, 688, 846
BmgBI CACGTC 2 cut(s) 431, 1038
BmgT120I GGNCC 5 cut(s) 4, 484, 616, 688, 846
BmiI GGNNCC 3 cut(s) 83, 690, 997
BmrFI CCNGG 2 cut(s) 328, 947
BmsI GCATC 4 cut(s) 313, 568, 778, 1164
BpiI GAAGAC 2 cut(s) 233, 752
BpmI CTGGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 947
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 2 cut(s) 498, 540
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 330, 360
Bsc4I CCNNNNNNNGG 5 cut(s) 203, 440, 504, 992, 1052
Bse1I ACTGG 2 cut(s) 982, 1075
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 498, 540
BseGI GGATG 7 cut(s) 367, 409, 494, 527, 559, 963, 1183
BseLI CCNNNNNNNGG 5 cut(s) 203, 440, 504, 992, 1052
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 2 cut(s) 982, 1075
BseXI GCAGC 2 cut(s) 692, 901
BseYI CCCAGC 1 cut(s) 691
BsgI GTGCAG 1 cut(s) 684
BshFI GGCC 3 cut(s) 5, 280, 617
BshNI GGYRCC 1 cut(s) 995
BsiHKAI GWGCWC 1 cut(s) 899
BsiSI CCGG 1 cut(s) 946
BslI CCNNNNNNNGG 5 cut(s) 203, 440, 504, 992, 1052
BsmAI GTCTC 3 cut(s) 513, 591, 968
BsmI GAATGC 1 cut(s) 987
BsnI GGCC 3 cut(s) 5, 280, 617
Bso31I GGTCTC 1 cut(s) 513
Bsp1286I GDGCHC 1 cut(s) 899
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 2 cut(s) 50, 1152
BspACI CCGC 2 cut(s) 1213, 1216
BspANI GGCC 3 cut(s) 5, 280, 617
BspCNI CTCAG 1 cut(s) 770
BspLI GGNNCC 3 cut(s) 83, 690, 997
BspMAI CTGCAG 1 cut(s) 703
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 995
BspTNI GGTCTC 1 cut(s) 513
BsrBI CCGCTC 1 cut(s) 1213
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 2 cut(s) 982, 1075
BssECI CCNNGG 2 cut(s) 498, 540
BssMI GATC 2 cut(s) 50, 1152
BssNAI GTATAC 1 cut(s) 1146
BssT1I CCWWGG 2 cut(s) 498, 540
Bst1107I GTATAC 1 cut(s) 1146
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 412, 625, 1150
Bst6I CTCTTC 1 cut(s) 634
BstAUI TGTACA 1 cut(s) 646
BstDEI CTNAG 1 cut(s) 757
BstENI CCTNNNNNAGG 1 cut(s) 990
BstF5I GGATG 7 cut(s) 367, 409, 494, 527, 559, 963, 1183
BstHHI GCGC 2 cut(s) 492, 1005
BstKTI GATC 2 cut(s) 53, 1155
BstMAI GTCTC 3 cut(s) 513, 591, 968
BstMBI GATC 2 cut(s) 50, 1152
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 782
BstSCI CCNGG 2 cut(s) 326, 945
BstSFI CTRYAG 3 cut(s) 624, 699, 1156
BstV1I GCAGC 2 cut(s) 692, 901
BstV2I GAAGAC 2 cut(s) 233, 752
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BstZ17I GTATAC 1 cut(s) 1146
BsuRI GGCC 3 cut(s) 5, 280, 617
BtrI CACGTC 2 cut(s) 431, 1038
BtsCI GGATG 7 cut(s) 367, 409, 494, 527, 559, 963, 1183
BtsI GCAGTG 1 cut(s) 696
BtsIMutI CAGTG 2 cut(s) 417, 696
BveI ACCTGC 1 cut(s) 495
CaiI CAGNNNCTG 1 cut(s) 698
CfoI GCGC 2 cut(s) 492, 1005
Cfr13I GGNCC 5 cut(s) 4, 484, 616, 688, 846
Csp6I GTAC 3 cut(s) 530, 647, 996
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 3 cut(s) 779, 1000, 1076
CviQI GTAC 3 cut(s) 530, 647, 996
DdeI CTNAG 1 cut(s) 757
DpnI GATC 2 cut(s) 52, 1154
DpnII GATC 2 cut(s) 50, 1152
DraI TTTAAA 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
EciI GGCGGA 1 cut(s) 1231
Ecl136II GAGCTC 1 cut(s) 897
Eco130I CCWWGG 2 cut(s) 498, 540
Eco147I AGGCCT 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 899
Eco31I GGTCTC 1 cut(s) 513
Eco47I GGWCC 3 cut(s) 484, 688, 846
Eco53kI GAGCTC 1 cut(s) 897
EcoICRI GAGCTC 1 cut(s) 897
EcoNI CCTNNNNNAGG 1 cut(s) 990
EcoO109I RGGNCCY 3 cut(s) 484, 688, 846
EcoRI GAATTC 1 cut(s) 886
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 498, 540
EcoT22I ATGCAT 1 cut(s) 793
EcoT38I GRGCYC 1 cut(s) 899
ErhI CCWWGG 2 cut(s) 498, 540
FaeI CATG 3 cut(s) 782, 1003, 1079
FatI CATG 3 cut(s) 778, 999, 1075
FblI GTMKAC 1 cut(s) 1145
Fnu4HI GCNGC 3 cut(s) 681, 915, 1214
FokI GGATG 7 cut(s) 374, 416, 481, 534, 546, 970, 1170
FriOI GRGCYC 1 cut(s) 899
Fsp4HI GCNGC 3 cut(s) 681, 915, 1214
FspBI CTAG 3 cut(s) 512, 1103, 1113
GlaI GCGC 2 cut(s) 491, 1004
GluI GCNGC 3 cut(s) 681, 915, 1214
GsaI CCCAGC 1 cut(s) 695
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 5, 280, 617
HapII CCGG 1 cut(s) 946
HhaI GCGC 2 cut(s) 492, 1005
Hin1II CATG 3 cut(s) 782, 1003, 1079
Hin6I GCGC 2 cut(s) 490, 1003
HinP1I GCGC 2 cut(s) 490, 1003
HincII GTYRAC 1 cut(s) 943
HindII GTYRAC 1 cut(s) 943
HinfI GANTC 2 cut(s) 44, 716
HpaI GTTAAC 1 cut(s) 943
HpaII CCGG 1 cut(s) 946
HphI GGTGA 2 cut(s) 455, 641
Hpy166II GTNNAC 3 cut(s) 943, 1041, 1146
Hpy188I TCNGA 6 cut(s) 60, 86, 721, 760, 901, 1131
Hpy188III TCNNGA 7 cut(s) 48, 155, 266, 378, 512, 1113, 1226
Hpy8I GTNNAC 3 cut(s) 943, 1041, 1146
HpyAV CCTTC 8 cut(s) 352, 409, 440, 449, 866, 1046, 1050, 1196
HpyCH4III ACNGT 3 cut(s) 412, 625, 1150
HpyCH4IV ACGT 3 cut(s) 241, 430, 1037
HpyCH4V TGCA 6 cut(s) 10, 665, 701, 791, 815, 917
HpyF3I CTNAG 1 cut(s) 757
HpySE526I ACGT 3 cut(s) 241, 430, 1037
Hsp92II CATG 3 cut(s) 782, 1003, 1079
HspAI GCGC 2 cut(s) 490, 1003
KpnI GGTACC 1 cut(s) 999
KspAI GTTAAC 1 cut(s) 943
Kzo9I GATC 2 cut(s) 50, 1152
LmnI GCTCC 2 cut(s) 1210, 1218
Lsp1109I GCAGC 2 cut(s) 692, 901
LweI GCATC 4 cut(s) 313, 568, 778, 1164
MaeI CTAG 3 cut(s) 512, 1103, 1113
MaeII ACGT 3 cut(s) 241, 430, 1037
MaeIII GTNAC 1 cut(s) 1105
MalI GATC 2 cut(s) 52, 1154
MbiI CCGCTC 1 cut(s) 1213
MboI GATC 2 cut(s) 50, 1152
MboII GAAGA 7 cut(s) 190, 238, 648, 651, 757, 865, 868
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 899
MluCI AATT 7 cut(s) 576, 654, 816, 886, 918, 1016, 1116
MlyI GAGTC 1 cut(s) 725
MmeI TCCRAC 3 cut(s) 10, 951, 1142
MnlI CCTC 5 cut(s) 255, 264, 444, 463, 925
Mph1103I ATGCAT 1 cut(s) 793
MseI TTAA 5 cut(s) 24, 579, 794, 942, 951
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 1 cut(s) 946
MspR9I CCNGG 2 cut(s) 328, 947
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 987
MvaI CCWGG 1 cut(s) 328
NciI CCSGG 1 cut(s) 947
NdeII GATC 2 cut(s) 50, 1152
NlaIII CATG 3 cut(s) 782, 1003, 1079
NlaIV GGNNCC 3 cut(s) 83, 690, 997
NsiI ATGCAT 1 cut(s) 793
NspI RCATGY 1 cut(s) 782
PceI AGGCCT 1 cut(s) 280
PctI GAATGC 1 cut(s) 987
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 682, 916, 1215
PleI GAGTC 1 cut(s) 724
PpsI GAGTC 1 cut(s) 724
PpuMI RGGWCCY 3 cut(s) 484, 688, 846
Psp124BI GAGCTC 1 cut(s) 899
Psp5II RGGWCCY 3 cut(s) 484, 688, 846
Psp6I CCWGG 1 cut(s) 326
PspFI CCCAGC 1 cut(s) 691
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 83, 690, 997
PspPI GGNCC 5 cut(s) 4, 484, 616, 688, 846
PspPPI RGGWCCY 3 cut(s) 484, 688, 846
PstI CTGCAG 1 cut(s) 703
PstNI CAGNNNCTG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 3 cut(s) 531, 648, 997
RsaNI GTAC 3 cut(s) 530, 647, 996
RseI CAYNNNNRTG 1 cut(s) 564
SacI GAGCTC 1 cut(s) 899
SaqAI TTAA 5 cut(s) 24, 579, 794, 942, 951
SatI GCNGC 3 cut(s) 681, 915, 1214
Sau3AI GATC 2 cut(s) 50, 1152
Sau96I GGNCC 5 cut(s) 4, 484, 616, 688, 846
SchI GAGTC 1 cut(s) 725
ScrFI CCNGG 2 cut(s) 328, 947
SduI GDGCHC 1 cut(s) 899
SfaNI GCATC 4 cut(s) 313, 568, 778, 1164
SfcI CTRYAG 3 cut(s) 624, 699, 1156
SinI GGWCC 3 cut(s) 484, 688, 846
SmiMI CAYNNNNRTG 1 cut(s) 564
Sse9I AATT 7 cut(s) 576, 654, 816, 886, 918, 1016, 1116
SseBI AGGCCT 1 cut(s) 280
SsiI CCGC 2 cut(s) 1213, 1216
SspI AATATT 2 cut(s) 143, 882
SspMI CTAG 3 cut(s) 512, 1103, 1113
SstI GAGCTC 1 cut(s) 899
StuI AGGCCT 1 cut(s) 280
StyD4I CCNGG 2 cut(s) 326, 945
StyI CCWWGG 2 cut(s) 498, 540
TaaI ACNGT 3 cut(s) 412, 625, 1150
TaiI ACGT 3 cut(s) 244, 433, 1040
TaqI TCGA 2 cut(s) 47, 890
TasI AATT 7 cut(s) 576, 654, 816, 886, 918, 1016, 1116
TatI WGTACW 1 cut(s) 646
TauI GCSGC 1 cut(s) 1216
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 5 cut(s) 24, 579, 794, 942, 951
Tru9I TTAA 5 cut(s) 24, 579, 794, 942, 951
TscAI CASTG 2 cut(s) 417, 703
TseI GCWGC 2 cut(s) 680, 914
TspDTI ATGAA 5 cut(s) 174, 420, 875, 974, 1077
TspRI CASTG 2 cut(s) 417, 703
VpaK11BI GGWCC 3 cut(s) 484, 688, 846
XagI CCTNNNNNAGG 1 cut(s) 990
XapI RAATTY 2 cut(s) 886, 1016
XbaI TCTAGA 2 cut(s) 511, 1112
XceI RCATGY 1 cut(s) 782
XmiI GTMKAC 1 cut(s) 1145
XspI CTAG 3 cut(s) 512, 1103, 1113
Zsp2I ATGCAT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.