Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009005.1

Orthogroup ID

OG0000683

Physical Location & Seq

Genomic Coordinates Reverse (-)

24964 .. 31206

Gene Structure 6243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009005.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

atgatgggctcgtataacctaccattcaaagttggggaaggcgtagaatggagttcattcatgaaaggttatcgcggtgcgtggttccgatgtaagataaaaaatattggctggagaaatggtcaactgtcatgtgccttggaatattatgactttccagatgaaaaatcaaaatgggaaaaaatgtatcaaagcaaccctgctgatagtaaaaggacaagaaaagagaagatattgatgatgcgtcctccctttcctcccatgtataatgaaagtaaaaggcctgatgtcaatactatatcggaagtggtagttattgtcaatgatatctggaaggtgggagatttagttgattggtggaaggatgattgttattggtctggaaaagtagcagaagtattaggggatgaaaaagttaaggttgagttgccacttcctcctgctggtgaaggagttgaaggagagacctatgaggcttcttgcaaggacttgcgtgcatccctgaattggtctctagaaggcggttggacagtgcctacatccaaggagaatgaaaatgggcgtccttgtgctcgagtaattaagcctgatagtcaaggggacattgcaagcttgatggtccaatctttggatgatggaagaaggggtgcccaagctattgctggtgtcaagcaacctttaacaggaaaggacacaccaactgcagaaacaaatagtgggtttgagaagatgagttgcccagatactgtttcaaaattgcatgttaaacatgcatcaaatgaaatggaggcaactacaactagggtagacatacttgataacaaaaagcccttaaagagaaagaaaactcatgtggcagatagtgggtttgggaagatgagttgctcagatagcgtttcaaaattgcatgttgaagaggcatcaaatgaaatggaggcaactacaacaagggtagacatacttgataacactacgcccttaaagaggaagaaaactcatgaagacatagtgttaaattcaacgaattctgatacattagaagctgcacttttggacttggaagaacttgtaaaccggattaaatggatgaagggtatcttgcggattggattacctttgactggtgcgatgccaccccgttggaaatttcttggagatcattccttgtccacctcaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Agenet

Protein Analysis

393

Amino Acids

44.08

Weight (kDa)

7.01

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000683)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42670 AT5G52070 AT5G52070 AT5G52070 AT5G52070 AT5G52070 AT5G52070
fragaria_vesca	FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990 FvH4_3g28990
malus_domestica	MD16G1211400.v1.1
prunus_persica	Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1 Prupe.1G033500_v2.0.a1
pyrus_communis	pycom16g17720
rosa_chinensis	RchiOBHm_Chr4g0391121 RchiOBHm_Chr5g0051721 RchiOBHm_Chr7g0211841
rosa_laevigata	RLG00000002960 RLG00000009887 RLG00000034865
rosa_multiflora	Rmu_sc0000068.1_g000012 Rmu_sc0001824.1_g000045 Rmu_sc0005322.1_g000013 Rmu_sc0008872.1_g000005 Rmu_sc0009005.1_g000006
rosa_roxburghii	Rroxscaffold_1G00027220 Rroxscaffold_3G00247380 Rroxscaffold_5G00336910
rosa_rugosa	Rorug03G0334300 Rorug05G0277200 Rorug05G0277300 Rorug05G0277300 Rorug05G0277300 Rorug05G0277400 Rorug05G0277500 Rorug07G0129300 Rorug07G0129400 Rorug07G0129500 Rorug07G0129500
rosa_samantha	Rh4AG034700 Rh4BG029900 Rh4CG038500 Rh4DG031900 Rh4DG032200 Rh5AG349400 Rh5BG361000 Rh5CG385600 Rh5DG375800 Rh7AG261900 Rh7BG255600 Rh7DG268400
rosa_wichuraiana	Rw4G001280 Rw4G002700 Rw5G033010 Rw7G022330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	647
AccB7I	CCANNNNNTGG	1 cut(s)	628
AccI	GTMKAC	2 cut(s)	807, 954
AccII	CGCG	1 cut(s)	75
AciI	CCGC	3 cut(s)	75, 522, 1102
AcsI	RAATTY	3 cut(s)	1015, 1024, 1145
AcyI	GRCGYC	1 cut(s)	562
AfiI	CCNNNNNNNGG	6 cut(s)	443, 507, 628, 683, 984, 1121
AgsI	TTSAA	6 cut(s)	28, 458, 753, 900, 914, 1020
AluBI	AGCT	3 cut(s)	612, 656, 1043
AluI	AGCT	3 cut(s)	612, 656, 1043
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	2 cut(s)	458, 516
AlwNI	CAGNNNCTG	1 cut(s)	746
Ama87I	CYCGRG	1 cut(s)	573
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	1043
ApoI	RAATTY	3 cut(s)	1015, 1024, 1145
AspS9I	GGNCC	1 cut(s)	619
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	1 cut(s)	573
AvaII	GGWCC	1 cut(s)	619
BaeGI	GKGCMC	1 cut(s)	652
BanI	GGYRCC	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	1008
Bbv12I	GWGCWC	1 cut(s)	574
BbvI	GCAGC	1 cut(s)	1030
BccI	CCATC	2 cut(s)	610, 629
BcoDI	GTCTC	2 cut(s)	458, 516
BfaI	CTAG	2 cut(s)	515, 801
BfmI	CTRYAG	1 cut(s)	702
BisI	GCNGC	1 cut(s)	1044
BlsI	GCNGC	1 cut(s)	1045
Bme18I	GGWCC	1 cut(s)	619
BmeT110I	CYCGRG	1 cut(s)	573
BmgT120I	GGNCC	1 cut(s)	619
BmiI	GGNNCC	2 cut(s)	86, 649
BmsI	GCATC	5 cut(s)	231, 506, 782, 929, 1119
BpiI	GAAGAC	1 cut(s)	1008
BpmI	CTGGAG	1 cut(s)	133
BsaHI	GRCGYC	1 cut(s)	562
BsaI	GGTCTC	2 cut(s)	458, 516
BsaJI	CCNNGG	2 cut(s)	138, 543
BsaWI	WCCGGW	1 cut(s)	1074
BsaXI	ACNNNNNCTCC	4 cut(s)	106, 136, 333, 363
Bsc4I	CCNNNNNNNGG	6 cut(s)	443, 507, 628, 683, 984, 1121
Bse1I	ACTGG	1 cut(s)	1126
Bse3DI	GCAATG	1 cut(s)	603
BseDI	CCNNGG	2 cut(s)	138, 543
BseGI	GGATG	6 cut(s)	370, 412, 497, 539, 637, 1092
BseLI	CCNNNNNNNGG	6 cut(s)	443, 507, 628, 683, 984, 1121
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	1 cut(s)	900
BseNI	ACTGG	1 cut(s)	1126
BseSI	GKGCMC	1 cut(s)	652
BseXI	GCAGC	1 cut(s)	1030
BsgI	GTGCAG	1 cut(s)	1029
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	283
BshNI	GGYRCC	1 cut(s)	647
BsiHKAI	GWGCWC	1 cut(s)	574
BsiHKCI	CYCGRG	1 cut(s)	573
BsiSI	CCGG	1 cut(s)	1075
BslFI	GGGAC	1 cut(s)	614
BslI	CCNNNNNNNGG	6 cut(s)	443, 507, 628, 683, 984, 1121
BsmAI	GTCTC	2 cut(s)	458, 516
BsmFI	GGGAC	1 cut(s)	614
BsnI	GGCC	1 cut(s)	283
Bso31I	GGTCTC	2 cut(s)	458, 516
BsoBI	CYCGRG	1 cut(s)	573
Bsp1286I	GDGCHC	3 cut(s)	11, 574, 652
Bsp143I	GATC	1 cut(s)	1156
BspACI	CCGC	3 cut(s)	75, 522, 1102
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	1 cut(s)	899
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	2 cut(s)	60, 997
BspLI	GGNNCC	2 cut(s)	86, 649
BspMAI	CTGCAG	1 cut(s)	706
BspT107I	GGYRCC	1 cut(s)	647
BspTNI	GGTCTC	2 cut(s)	458, 516
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	1126
BssECI	CCNNGG	2 cut(s)	138, 543
BssMI	GATC	1 cut(s)	1156
BssNI	GRCGYC	1 cut(s)	562
BssT1I	CCWWGG	2 cut(s)	138, 543
Bst4CI	ACNGT	3 cut(s)	129, 532, 748
Bst6I	CTCTTC	1 cut(s)	909
BstACI	GRCGYC	1 cut(s)	562
BstC8I	GCNNGC	2 cut(s)	495, 610
BstDEI	CTNAG	1 cut(s)	886
BstENI	CCTNNNNNAGG	2 cut(s)	681, 982
BstF5I	GGATG	6 cut(s)	370, 412, 497, 539, 637, 1092
BstFNI	CGCG	1 cut(s)	75
BstKTI	GATC	1 cut(s)	1159
BstMAI	GTCTC	2 cut(s)	458, 516
BstMBI	GATC	1 cut(s)	1156
BstMWI	GCNNNNNNNGC	1 cut(s)	891
BstNSI	RCATGY	3 cut(s)	764, 773, 911
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	652
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	1 cut(s)	1030
BstV2I	GAAGAC	1 cut(s)	1008
BstXI	CCANNNNNNTGG	1 cut(s)	1140
BsuRI	GGCC	1 cut(s)	283
BtgZI	GCGATG	1 cut(s)	1142
BtsCI	GGATG	6 cut(s)	370, 412, 497, 539, 637, 1092
BtsIMutI	CAGTG	1 cut(s)	537
Cac8I	GCNNGC	2 cut(s)	495, 610
CaiI	CAGNNNCTG	1 cut(s)	746
CciI	TCATGA	2 cut(s)	60, 997
Cfr13I	GGNCC	1 cut(s)	619
CseI	GACGC	2 cut(s)	233, 551
CviAII	CATG	8 cut(s)	61, 132, 262, 761, 770, 851, 908, 998
CviJI	RGCY	9 cut(s)	9, 111, 283, 476, 586, 612, 656, 829, 1043
CviKI_1	RGCY	9 cut(s)	9, 111, 283, 476, 586, 612, 656, 829, 1043
DdeI	CTNAG	1 cut(s)	886
DpnI	GATC	1 cut(s)	1158
DpnII	GATC	1 cut(s)	1156
Eam1104I	CTCTTC	1 cut(s)	909
EarI	CTCTTC	1 cut(s)	909
Eco130I	CCWWGG	2 cut(s)	138, 543
Eco147I	AGGCCT	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	11
Eco31I	GGTCTC	2 cut(s)	458, 516
Eco32I	GATATC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	619
Eco88I	CYCGRG	1 cut(s)	573
EcoNI	CCTNNNNNAGG	2 cut(s)	681, 982
EcoRI	GAATTC	1 cut(s)	1024
EcoRV	GATATC	1 cut(s)	328
EcoT14I	CCWWGG	2 cut(s)	138, 543
EcoT22I	ATGCAT	1 cut(s)	775
EcoT38I	GRGCYC	1 cut(s)	11
ErhI	CCWWGG	2 cut(s)	138, 543
FaeI	CATG	8 cut(s)	64, 135, 265, 764, 773, 854, 911, 1001
FalI	AAGNNNNNCTT	4 cut(s)	1032, 1064, 1082, 1114
FaqI	GGGAC	1 cut(s)	614
FatI	CATG	8 cut(s)	60, 131, 261, 760, 769, 850, 907, 997
FblI	GTMKAC	2 cut(s)	807, 954
Fnu4HI	GCNGC	1 cut(s)	1044
FokI	GGATG	6 cut(s)	377, 419, 484, 526, 644, 1099
FriOI	GRGCYC	1 cut(s)	11
Fsp4HI	GCNGC	1 cut(s)	1044
FspBI	CTAG	2 cut(s)	515, 801
GluI	GCNGC	1 cut(s)	1044
GsuI	CTGGAG	1 cut(s)	133
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	1 cut(s)	1075
HgaI	GACGC	2 cut(s)	233, 551
Hin1I	GRCGYC	1 cut(s)	562
Hin1II	CATG	8 cut(s)	64, 135, 265, 764, 773, 854, 911, 1001
HincII	GTYRAC	1 cut(s)	125
HindII	GTYRAC	1 cut(s)	125
HindIII	AAGCTT	1 cut(s)	610
HpaII	CCGG	1 cut(s)	1075
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	5 cut(s)	125, 808, 955, 1072, 1170
Hpy188I	TCNGA	4 cut(s)	89, 304, 889, 1030
Hpy188III	TCNNGA	6 cut(s)	61, 158, 331, 381, 515, 998
Hpy8I	GTNNAC	5 cut(s)	125, 808, 955, 1072, 1170
HpyAV	CCTTC	8 cut(s)	32, 328, 355, 443, 452, 512, 636, 1084
HpyCH4III	ACNGT	3 cut(s)	129, 532, 748
HpyCH4V	TGCA	8 cut(s)	483, 497, 608, 704, 760, 773, 907, 1046
HpyF10VI	GCNNNNNNNGC	1 cut(s)	891
HpyF3I	CTNAG	1 cut(s)	886
Hsp92I	GRCGYC	1 cut(s)	562
Hsp92II	CATG	8 cut(s)	64, 135, 265, 764, 773, 854, 911, 1001
Kzo9I	GATC	1 cut(s)	1156
Lsp1109I	GCAGC	1 cut(s)	1030
LweI	GCATC	5 cut(s)	231, 506, 782, 929, 1119
MaeI	CTAG	2 cut(s)	515, 801
MalI	GATC	1 cut(s)	1158
MboI	GATC	1 cut(s)	1156
MboII	GAAGA	8 cut(s)	241, 651, 739, 886, 926, 1000, 1013, 1073
MhlI	GDGCHC	3 cut(s)	11, 574, 652
MluCI	AATT	7 cut(s)	505, 579, 755, 902, 1015, 1024, 1145
MmeI	TCCRAC	2 cut(s)	506, 1121
MnlI	CCTC	8 cut(s)	258, 267, 447, 466, 781, 910, 928, 978
Mph1103I	ATGCAT	1 cut(s)	775
MseI	TTAA	8 cut(s)	417, 582, 680, 765, 833, 980, 1013, 1080
MspI	CCGG	1 cut(s)	1075
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	891
NdeII	GATC	1 cut(s)	1156
NlaIII	CATG	8 cut(s)	64, 135, 265, 764, 773, 854, 911, 1001
NlaIV	GGNNCC	2 cut(s)	86, 649
NsiI	ATGCAT	1 cut(s)	775
NspI	RCATGY	3 cut(s)	764, 773, 911
PaeR7I	CTCGAG	1 cut(s)	573
PagI	TCATGA	2 cut(s)	60, 997
PceI	AGGCCT	1 cut(s)	283
PflMI	CCANNNNNTGG	1 cut(s)	628
PkrI	GCNGC	1 cut(s)	1045
PspN4I	GGNNCC	2 cut(s)	86, 649
PspPI	GGNCC	1 cut(s)	619
PspXI	VCTCGAGB	1 cut(s)	573
PstI	CTGCAG	1 cut(s)	706
PstNI	CAGNNNCTG	1 cut(s)	746
SaqAI	TTAA	8 cut(s)	417, 582, 680, 765, 833, 980, 1013, 1080
SatI	GCNGC	1 cut(s)	1044
Sau3AI	GATC	1 cut(s)	1156
Sau96I	GGNCC	1 cut(s)	619
SduI	GDGCHC	3 cut(s)	11, 574, 652
SfaNI	GCATC	5 cut(s)	231, 506, 782, 929, 1119
SfcI	CTRYAG	1 cut(s)	702
Sfr274I	CTCGAG	1 cut(s)	573
SinI	GGWCC	1 cut(s)	619
SlaI	CTCGAG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	573
SmoI	CTYRAG	1 cut(s)	573
Sse9I	AATT	7 cut(s)	505, 579, 755, 902, 1015, 1024, 1145
SseBI	AGGCCT	1 cut(s)	283
SsiI	CCGC	3 cut(s)	75, 522, 1102
SspI	AATATT	2 cut(s)	106, 146
SspMI	CTAG	2 cut(s)	515, 801
StuI	AGGCCT	1 cut(s)	283
StyI	CCWWGG	2 cut(s)	138, 543
TaaI	ACNGT	3 cut(s)	129, 532, 748
TaqI	TCGA	1 cut(s)	574
TasI	AATT	7 cut(s)	505, 579, 755, 902, 1015, 1024, 1145
Tru1I	TTAA	8 cut(s)	417, 582, 680, 765, 833, 980, 1013, 1080
Tru9I	TTAA	8 cut(s)	417, 582, 680, 765, 833, 980, 1013, 1080
TscAI	CASTG	1 cut(s)	537
TseI	GCWGC	1 cut(s)	1043
TspRI	CASTG	1 cut(s)	537
Van91I	CCANNNNNTGG	1 cut(s)	628
VpaK11BI	GGWCC	1 cut(s)	619
XagI	CCTNNNNNAGG	2 cut(s)	681, 982
XapI	RAATTY	3 cut(s)	1015, 1024, 1145
XbaI	TCTAGA	1 cut(s)	514
XceI	RCATGY	3 cut(s)	764, 773, 911
XcmI	CCANNNNNNNNNTGG	1 cut(s)	659
XhoI	CTCGAG	1 cut(s)	573
XmiI	GTMKAC	2 cut(s)	807, 954
XspI	CTAG	2 cut(s)	515, 801
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.