Rorug03G0334300

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000683
Physical Location & Seq
Forward (+)
39228994 .. 39230214
1221 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0334300.1

Sequence Viewer

Length: 831 bp
ATGATAGTGTCTCCGGAGGTTATGCCACAGTTCAATGCAACTCCAGTTCGTCTCCAGTTCAATGCAACTCAAGAACAGAAGACCAAGGCTGAGTTGACGATAAATATTTCGGAGGAAGAGTCAGGTCGAGACACGTCAATGAAAGCCAACAGACAGAAGAAAGCACAGGAGAAGGCAAAGAAAACGAAAGCAACTACTTTGAAACAAAAACAAAAGGATACTGTGGAGGTGATGGAACAACAAGAGGAAAAGATTGAGATCGTAGACTGGGGGAAGAACAAAGTGTACCAGTTTATGGACGGGCAGACCCAGAGCAAACTGGAGAAATACTGGAACAAGGGATCAAGTGTATGCTTTTGGGGAGGTAGGATGTTGGGGTCAGAAATATCGAGACATGATCTGAAAGATATGATTATGGATAACGCAATATCAGACAATTGGATAGATTGCTATGGGAATCTGTTGTTGGATAAGCTATTGAAGGAAGATTCAAAAAGTGCTATGAGGCCAGTTTTTATGCACAGCTCGTGCTGGTATTCGGCTTTACAAGTTGAGTTGTTAGCTATACAAGCTGGTATGGATCTATGTCAAGCTATGATGATTGAGGAAAGGCGCCTGATATGTCTGTTTAGTGCTATTATTGAGGATATCAAGGTTGGTACAAGAGGTTTTCAGACCATATCTTTTGTTCATGCTTCTCGTTCTGCAAATTGTGTTGCTCATAGGCTAGCTAGTCATGCCTTTGAAAATGAAGGTAACTTTGAGTGGTTTGTTCATGCTCCAGACTTAATCTTGGATGCCATCATGTACGATTGTAATCATCGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

276

Amino Acids

31.67

Weight (kDa)

6.2

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 612
AccB7I CCANNNNNTGG 1 cut(s) 295
AccI GTMKAC 1 cut(s) 264
AccIII TCCGGA 1 cut(s) 13
AclWI GGATC 2 cut(s) 349, 588
AcyI GRCGYC 1 cut(s) 613
AfaI GTAC 3 cut(s) 287, 661, 809
AfiI CCNNNNNNNGG 1 cut(s) 295
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 6 cut(s) 34, 61, 202, 481, 492, 746
AjiI CACGTC 1 cut(s) 135
AjuI GAANNNNNNNTTGG 2 cut(s) 449, 481
AluBI AGCT 6 cut(s) 475, 525, 563, 572, 593, 731
AluI AGCT 6 cut(s) 475, 525, 563, 572, 593, 731
Alw26I GTCTC 4 cut(s) 15, 56, 123, 385
AlwI GGATC 2 cut(s) 349, 588
Aor13HI TCCGGA 1 cut(s) 13
AoxI GGCC 1 cut(s) 506
AspLEI GCGC 1 cut(s) 615
AsuHPI GGTGA 1 cut(s) 241
AsuNHI GCTAGC 1 cut(s) 727
BanI GGYRCC 1 cut(s) 612
BauI CACGAG 1 cut(s) 526
BbsI GAAGAC 1 cut(s) 86
BccI CCATC 2 cut(s) 226, 809
BciVI GTATCC 1 cut(s) 211
BcoDI GTCTC 4 cut(s) 15, 56, 123, 385
BfaI CTAG 2 cut(s) 728, 732
BfoI RGCGCY 1 cut(s) 616
BfuI GTATCC 1 cut(s) 211
BmgBI CACGTC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 614
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 787
BmtI GCTAGC 1 cut(s) 731
BmuI ACTGGG 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 86
BpmI CTGGAG 4 cut(s) 27, 38, 341, 765
BpuEI CTTGAG 1 cut(s) 54
BsaBI GATNNNNATC 2 cut(s) 257, 816
BsaHI GRCGYC 1 cut(s) 613
BsaJI CCNNGG 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 13
BsaXI ACNNNNNCTCC 2 cut(s) 104, 134
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse1I ACTGG 7 cut(s) 44, 55, 272, 289, 324, 335, 509
Bse8I GATNNNNATC 2 cut(s) 257, 816
BseAI TCCGGA 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 2 cut(s) 375, 802
BseJI GATNNNNATC 2 cut(s) 257, 816
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 7 cut(s) 44, 55, 272, 289, 324, 335, 509
BshFI GGCC 1 cut(s) 508
BshNI GGYRCC 1 cut(s) 612
BsiSI CCGG 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 295
BsmAI GTCTC 4 cut(s) 15, 56, 123, 385
BsmBI CGTCTC 1 cut(s) 56
BsnI GGCC 1 cut(s) 508
Bsp13I TCCGGA 1 cut(s) 13
Bsp143I GATC 4 cut(s) 258, 341, 397, 580
BspANI GGCC 1 cut(s) 508
BspCNI CTCAG 1 cut(s) 82
BspEI TCCGGA 1 cut(s) 13
BspLI GGNNCC 1 cut(s) 614
BspOI GCTAGC 1 cut(s) 731
BspPI GGATC 2 cut(s) 349, 588
BspT107I GGYRCC 1 cut(s) 612
BsrI ACTGG 7 cut(s) 44, 55, 272, 289, 324, 335, 509
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 4 cut(s) 258, 341, 397, 580
BssNI GRCGYC 1 cut(s) 613
BssSI CACGAG 1 cut(s) 526
BssT1I CCWWGG 1 cut(s) 84
Bst2BI CACGAG 1 cut(s) 526
Bst4CI ACNGT 2 cut(s) 30, 223
Bst6I CTCTTC 1 cut(s) 111
BstACI GRCGYC 1 cut(s) 613
BstC8I GCNNGC 1 cut(s) 729
BstDEI CTNAG 1 cut(s) 90
BstF5I GGATG 2 cut(s) 375, 802
BstH2I RGCGCY 1 cut(s) 616
BstHHI GCGC 1 cut(s) 615
BstKTI GATC 4 cut(s) 261, 344, 400, 583
BstMAI GTCTC 4 cut(s) 15, 56, 123, 385
BstMBI GATC 4 cut(s) 258, 341, 397, 580
BstMWI GCNNNNNNNGC 2 cut(s) 569, 737
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BsuI GTATCC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 508
BtrI CACGTC 1 cut(s) 135
BtsCI GGATG 2 cut(s) 375, 802
Cac8I GCNNGC 1 cut(s) 729
CfoI GCGC 1 cut(s) 615
Csp6I GTAC 3 cut(s) 286, 660, 808
CviAII CATG 5 cut(s) 395, 692, 737, 776, 805
CviQI GTAC 3 cut(s) 286, 660, 808
DdeI CTNAG 1 cut(s) 90
DinI GGCGCC 1 cut(s) 614
DpnI GATC 4 cut(s) 260, 343, 399, 582
DpnII GATC 4 cut(s) 258, 341, 397, 580
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 84
Eco32I GATATC 1 cut(s) 649
EcoRV GATATC 1 cut(s) 649
EcoT14I CCWWGG 1 cut(s) 84
EgeI GGCGCC 1 cut(s) 614
EheI GGCGCC 1 cut(s) 614
ErhI CCWWGG 1 cut(s) 84
Esp3I CGTCTC 1 cut(s) 56
FaeI CATG 5 cut(s) 398, 695, 740, 779, 808
FatI CATG 5 cut(s) 394, 691, 736, 775, 804
FblI GTMKAC 1 cut(s) 264
FokI GGATG 2 cut(s) 382, 809
FspBI CTAG 2 cut(s) 728, 732
GlaI GCGC 1 cut(s) 614
GsuI CTGGAG 4 cut(s) 27, 38, 341, 765
HaeII RGCGCY 1 cut(s) 616
HaeIII GGCC 1 cut(s) 508
HapII CCGG 1 cut(s) 14
HhaI GCGC 1 cut(s) 615
Hin1I GRCGYC 1 cut(s) 613
Hin1II CATG 5 cut(s) 398, 695, 740, 779, 808
Hin6I GCGC 1 cut(s) 613
HinP1I GCGC 1 cut(s) 613
HincII GTYRAC 1 cut(s) 96
HindII GTYRAC 1 cut(s) 96
HinfI GANTC 3 cut(s) 119, 457, 488
HpaII CCGG 1 cut(s) 14
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 3 cut(s) 96, 265, 286
Hpy188I TCNGA 5 cut(s) 112, 382, 402, 433, 675
Hpy188III TCNNGA 5 cut(s) 14, 71, 128, 390, 782
Hpy8I GTNNAC 3 cut(s) 96, 265, 286
HpyAV CCTTC 3 cut(s) 166, 475, 746
HpyCH4III ACNGT 2 cut(s) 30, 223
HpyCH4IV ACGT 1 cut(s) 134
HpyCH4V TGCA 4 cut(s) 38, 65, 520, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 569, 737
HpyF3I CTNAG 1 cut(s) 90
HpySE526I ACGT 1 cut(s) 134
Hsp92I GRCGYC 1 cut(s) 613
Hsp92II CATG 5 cut(s) 398, 695, 740, 779, 808
HspAI GCGC 1 cut(s) 613
KasI GGCGCC 1 cut(s) 612
Kpn2I TCCGGA 1 cut(s) 13
Kzo9I GATC 4 cut(s) 258, 341, 397, 580
LmnI GCTCC 1 cut(s) 784
LweI GCATC 1 cut(s) 787
MaeI CTAG 2 cut(s) 728, 732
MaeII ACGT 1 cut(s) 134
MaeIII GTNAC 1 cut(s) 755
MalI GATC 4 cut(s) 260, 343, 399, 582
MboI GATC 4 cut(s) 258, 341, 397, 580
MboII GAAGA 5 cut(s) 91, 128, 169, 286, 497
MfeI CAATTG 1 cut(s) 436
MflI RGATCY 1 cut(s) 580
MluCI AATT 3 cut(s) 436, 709, 826
Mly113I GGCGCC 1 cut(s) 613
MlyI GAGTC 1 cut(s) 128
MmeI TCCRAC 1 cut(s) 447
MnlI CCTC 9 cut(s) 10, 106, 220, 238, 356, 498, 598, 637, 659
MroI TCCGGA 1 cut(s) 13
MseI TTAA 1 cut(s) 788
MslI CAYNNNNRTG 1 cut(s) 137
MspI CCGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 436
MwoI GCNNNNNNNGC 2 cut(s) 569, 737
NarI GGCGCC 1 cut(s) 613
NdeII GATC 4 cut(s) 258, 341, 397, 580
NheI GCTAGC 1 cut(s) 727
NlaIII CATG 5 cut(s) 398, 695, 740, 779, 808
NlaIV GGNNCC 1 cut(s) 614
PfeI GAWTC 2 cut(s) 457, 488
PflMI CCANNNNNTGG 1 cut(s) 295
PleI GAGTC 1 cut(s) 127
PluTI GGCGCC 1 cut(s) 616
PpsI GAGTC 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 614
PsrI GAACNNNNNNTAC 2 cut(s) 269, 301
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 3 cut(s) 287, 661, 809
RsaNI GTAC 3 cut(s) 286, 660, 808
RseI CAYNNNNRTG 1 cut(s) 137
SaqAI TTAA 1 cut(s) 788
Sau3AI GATC 4 cut(s) 258, 341, 397, 580
SchI GAGTC 1 cut(s) 128
SfaNI GCATC 1 cut(s) 787
SfoI GGCGCC 1 cut(s) 614
SmiMI CAYNNNNRTG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 69
SmoI CTYRAG 1 cut(s) 69
Sse9I AATT 3 cut(s) 436, 709, 826
SspDI GGCGCC 1 cut(s) 612
SspI AATATT 1 cut(s) 106
SspMI CTAG 2 cut(s) 728, 732
StyI CCWWGG 1 cut(s) 84
TaaI ACNGT 2 cut(s) 30, 223
TaiI ACGT 1 cut(s) 137
TaqI TCGA 2 cut(s) 127, 389
TasI AATT 3 cut(s) 436, 709, 826
TfiI GAWTC 2 cut(s) 457, 488
Tru1I TTAA 1 cut(s) 788
Tru9I TTAA 1 cut(s) 788
TspDTI ATGAA 4 cut(s) 155, 680, 764, 765
Van91I CCANNNNNTGG 1 cut(s) 295
XmiI GTMKAC 1 cut(s) 264
XspI CTAG 2 cut(s) 728, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.