Rw4G001280

Tudor-like domain present in plant sequences.

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
2344318 .. 2346473
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G001280.1

Sequence Viewer

Length: 519 bp
ATGCTTTCTAATCAACTTGAAAAGAAAAGCAGTTGCTGTTTCTTCTATACTAAGTTGTTTGGTATGCCTTTGCGGTTGCAGGAGAGTGAAAATGGGCGTCCTTGTGCTCGAGTAATTAAGCCTGATAGTCAAGGGGACATTGCAAGCTTGATGGTCCAATCTTTGGGTGATGGAAGTAGGGATGTCCAAGCTATTGCTGGTGTCAAGCAACCTTTAACAGGAAAGGAGACACCAGCTACAGAAACAAATATGGAGTCTGATGTGTCAGATAGTGGGTTTGAGAGAATGAGTTGCCCAGATACTGTTTCAAAATTGCATGTTAAAGATGCATCAAATGAAATGGAGGCAACTACAATTAGGGTAGACATACTTGATAACAAAAAGCCCTTAAAGAGAAAGAAAACTCATGTGGCAGATAGTGGCTTGGTTGAGAAGGCAAGTAGAGTTCCTTTATCTTTTGCATTATCTGTGACTTTTCACAATAATATTTATCGATGGCACGCAATTCCTAATGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

172

Amino Acids

19.01

Weight (kDa)

8.34

Isoelectric Point (pI)

48.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 163
AccI GTMKAC 1 cut(s) 363
AciI CCGC 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 97
AfiI CCNNNNNNNGG 2 cut(s) 163, 218
AgsI TTSAA 2 cut(s) 20, 309
AluBI AGCT 3 cut(s) 147, 191, 236
AluI AGCT 3 cut(s) 147, 191, 236
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 221
AlwNI CAGNNNCTG 2 cut(s) 36, 302
Ama87I CYCGRG 1 cut(s) 108
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
AspS9I GGNCC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 179
AvaI CYCGRG 1 cut(s) 108
AvaII GGWCC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 109
BccI CCATC 3 cut(s) 145, 164, 489
BcoDI GTCTC 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 237
Bme18I GGWCC 1 cut(s) 154
BmeT110I CYCGRG 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 154
BmsI GCATC 2 cut(s) 316, 338
Bsa29I ATCGAT 1 cut(s) 493
BsaHI GRCGYC 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 163, 218
Bse3DI GCAATG 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 493
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 2 cut(s) 163, 218
BseMI GCAATG 1 cut(s) 138
BshVI ATCGAT 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 108
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 163, 218
BsmAI GTCTC 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 108
Bsp1286I GDGCHC 1 cut(s) 109
BspACI CCGC 1 cut(s) 73
BspDI ATCGAT 1 cut(s) 493
BsrDI GCAATG 1 cut(s) 138
BssNI GRCGYC 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 304
BstACI GRCGYC 1 cut(s) 97
BstC8I GCNNGC 2 cut(s) 145, 501
BstDEI CTNAG 1 cut(s) 51
BstENI CCTNNNNNAGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 187
BstMAI GTCTC 1 cut(s) 221
BstNSI RCATGY 1 cut(s) 320
BstSFI CTRYAG 1 cut(s) 237
Bsu15I ATCGAT 1 cut(s) 493
BsuTUI ATCGAT 1 cut(s) 493
BtsCI GGATG 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 145, 501
CaiI CAGNNNCTG 2 cut(s) 36, 302
Cfr13I GGNCC 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 493
CseI GACGC 1 cut(s) 86
CviAII CATG 2 cut(s) 317, 407
CviJI RGCY 6 cut(s) 121, 147, 191, 236, 385, 423
CviKI_1 RGCY 6 cut(s) 121, 147, 191, 236, 385, 423
DdeI CTNAG 1 cut(s) 51
Eco47I GGWCC 1 cut(s) 154
Eco88I CYCGRG 1 cut(s) 108
EcoNI CCTNNNNNAGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 331
FaeI CATG 2 cut(s) 320, 410
FaiI YATR 6 cut(s) 48, 65, 251, 318, 368, 408
FaqI GGGAC 1 cut(s) 149
FatI CATG 2 cut(s) 316, 406
FblI GTMKAC 1 cut(s) 363
FokI GGATG 1 cut(s) 194
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 97
Hin1II CATG 2 cut(s) 320, 410
HindIII AAGCTT 1 cut(s) 145
HinfI GANTC 1 cut(s) 254
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 2 cut(s) 259, 268
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 1 cut(s) 427
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4V TGCA 5 cut(s) 79, 143, 316, 329, 461
HpyF3I CTNAG 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 97
Hsp92II CATG 2 cut(s) 320, 410
LpnPI CCDG 6 cut(s) 65, 135, 183, 204, 246, 309
LweI GCATC 2 cut(s) 316, 338
MaeIII GTNAC 1 cut(s) 469
MboII GAAGA 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 4 cut(s) 114, 311, 354, 504
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 1 cut(s) 337
Mph1103I ATGCAT 1 cut(s) 331
MseI TTAA 5 cut(s) 117, 215, 321, 389, 517
NlaIII CATG 2 cut(s) 320, 410
NmuCI GTSAC 1 cut(s) 469
NsiI ATGCAT 1 cut(s) 331
NspI RCATGY 1 cut(s) 320
PaeR7I CTCGAG 1 cut(s) 108
PflMI CCANNNNNTGG 1 cut(s) 163
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
PspPI GGNCC 1 cut(s) 154
PspXI VCTCGAGB 1 cut(s) 108
PstNI CAGNNNCTG 2 cut(s) 36, 302
SaqAI TTAA 5 cut(s) 117, 215, 321, 389, 517
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 263
SduI GDGCHC 1 cut(s) 109
SetI ASST 4 cut(s) 149, 193, 214, 238
SfaNI GCATC 2 cut(s) 316, 338
SfcI CTRYAG 1 cut(s) 237
Sfr274I CTCGAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 154
SlaI CTCGAG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 4 cut(s) 114, 311, 354, 504
SsiI CCGC 1 cut(s) 73
SspI AATATT 1 cut(s) 487
TaaI ACNGT 1 cut(s) 304
TaqI TCGA 2 cut(s) 109, 493
TasI AATT 4 cut(s) 114, 311, 354, 504
Tru1I TTAA 5 cut(s) 117, 215, 321, 389, 517
Tru9I TTAA 5 cut(s) 117, 215, 321, 389, 517
TseFI GTSAC 1 cut(s) 469
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 1 cut(s) 351
Van91I CCANNNNNTGG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 154
XagI CCTNNNNNAGG 1 cut(s) 216
XceI RCATGY 1 cut(s) 320
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XhoI CTCGAG 1 cut(s) 108
XmiI GTMKAC 1 cut(s) 363
Zsp2I ATGCAT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.