Rw5G033010

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000683
Physical Location & Seq
Reverse (-)
55975629 .. 55984122
8494 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G033010.1

Sequence Viewer

Length: 1080 bp
ATGGCCCTGCATAACCTACCATTTAAAGTTGGACAGGACATAGAATCGAGATCCTTTCTGAAAGGTTATCGTGGTGCGTGGTTCCGATGTAAGATAAAAGATATTGGCTGGAGAAATGGTCAGCTGTCGTGTGCTTTGGAATATTATGACTTTCCAGATGAAAAAATAGCTTGGGAGAAGATATATCAAAACAACCCTGCTGATGGTAAAAGGACAAGAAAGGGGAAGACATTGATGATACGTCCTCCCTTTCCTCCTATCTATCGTGAAAGTAAAAGGCCTGATGTCAATACCATATTGGAAGTGATAGTTATAGTCAATGATGCCTGGAAAGTGGGAGATTTAGTTGATTGGTGGAAGGATGGTTGTTATTGGTCTGGAAAAGTAGCAGAAGTATTAGGGGATGAAACAGTGAAGGTTGAGTTGCCACGTCCTCCTGTCGGTGAAGGAGTTGAAGGAGAGATGTATGAGGCTTCTTACAAGGACCTGCGCTCATCCTTGGATTGGTCTCTAGAATATGGATGGACAGTACCTACACCCAAGGAGAGAGAAAATGGGCATCCTTGTGTTCAAGTAATTAAGCCTGATAATCAAGGAGACATTCCAAGTGTGGTGGCCCAAACTGTAGGTGATGGAAGAAGAGATGTACAGGCAATTGCTGGTGCAGATCAATCTTTAGCAGCAAAGGACTTAGCAGCAAAGGACCCAGCCACTGCAGAAACAAATATGGAGTCTGATGTAGCAGATAGCCTTTTTGGGAAGACGAGTTGCTCAGATAGTGGTTCAAGTTCGCATGTGAAAGATGCATTAAATAAAATGGGGGGAACTGCAACTAGGATAGACATAGTTGATAACGATAGGTCCTTGAAGAAGATGAAAACTGACGAAGGCATAATATTGAATTCGATGAGCTCTGATACATTAGAAGCTGCAATTTTGGACTTGGAGGAACTTGTAAACCGGGTTAAATGGATGAAAGGTATGTTGGAGACTGGAATGCCTTTGACAGGTGCCATGCACCCCCATTGGAAATTTCTTGGAAATCATACCGCGTCCACGCCAAGTGAAGGTTTTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

359

Amino Acids

39.93

Weight (kDa)

5.42

Isoelectric Point (pI)

33.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 11 - 85 6.8e-09 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 1010
AccII CGCG 1 cut(s) 1052
AciI CCGC 1 cut(s) 1050
AclWI GGATC 1 cut(s) 45
AcsI RAATTY 2 cut(s) 901, 1031
AfaI GTAC 2 cut(s) 531, 648
AfiI CCNNNNNNNGG 5 cut(s) 203, 440, 504, 1007, 1067
AgsI TTSAA 5 cut(s) 455, 572, 786, 868, 901
AjiI CACGTC 1 cut(s) 431
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 2 cut(s) 968, 1000
AluBI AGCT 4 cut(s) 124, 170, 912, 929
AluI AGCT 4 cut(s) 124, 170, 912, 929
Alw21I GWGCWC 1 cut(s) 914
Alw26I GTCTC 3 cut(s) 513, 591, 983
AlwI GGATC 1 cut(s) 45
AlwNI CAGNNNCTG 1 cut(s) 713
AoxI GGCC 3 cut(s) 3, 278, 615
ApeKI GCWGC 3 cut(s) 680, 695, 929
ApoI RAATTY 2 cut(s) 901, 1031
ArsI GACNNNNNNTTYG 2 cut(s) 716, 748
Asp700I GAANNNNTTC 1 cut(s) 1071
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 5 cut(s) 4, 484, 616, 703, 861
AsuC2I CCSGG 1 cut(s) 962
AsuHPI GGTGA 2 cut(s) 455, 641
AvaII GGWCC 3 cut(s) 484, 703, 861
BanI GGYRCC 1 cut(s) 1010
BanII GRGCYC 1 cut(s) 914
BbsI GAAGAC 2 cut(s) 233, 767
Bbv12I GWGCWC 1 cut(s) 914
BbvI GCAGC 3 cut(s) 692, 707, 916
BccI CCATC 4 cut(s) 197, 356, 516, 626
BciT130I CCWGG 1 cut(s) 328
BcnI CCSGG 1 cut(s) 962
BcoDI GTCTC 3 cut(s) 513, 591, 983
BfaI CTAG 3 cut(s) 512, 834, 1078
BfmI CTRYAG 2 cut(s) 624, 714
BfuAI ACCTGC 1 cut(s) 495
BisI GCNGC 3 cut(s) 681, 696, 930
BlsI GCNGC 3 cut(s) 682, 697, 931
Bme1390I CCNGG 2 cut(s) 328, 962
Bme18I GGWCC 3 cut(s) 484, 703, 861
BmgBI CACGTC 1 cut(s) 431
BmgT120I GGNCC 5 cut(s) 4, 484, 616, 703, 861
BmiI GGNNCC 3 cut(s) 83, 705, 1012
BmrFI CCNGG 2 cut(s) 328, 962
BmsI GCATC 3 cut(s) 313, 568, 793
BpiI GAAGAC 2 cut(s) 233, 767
BpmI CTGGAG 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 962
BsaI GGTCTC 1 cut(s) 513
BsaJI CCNNGG 2 cut(s) 498, 540
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 330, 360
Bsc4I CCNNNNNNNGG 5 cut(s) 203, 440, 504, 1007, 1067
Bse1I ACTGG 1 cut(s) 997
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 2 cut(s) 498, 540
BseGI GGATG 6 cut(s) 367, 409, 494, 527, 559, 978
BseLI CCNNNNNNNGG 5 cut(s) 203, 440, 504, 1007, 1067
BseMII CTCAG 1 cut(s) 786
BseNI ACTGG 1 cut(s) 997
BseXI GCAGC 3 cut(s) 692, 707, 916
BseYI CCCAGC 1 cut(s) 706
BsgI GTGCAG 1 cut(s) 684
Bsh1236I CGCG 1 cut(s) 1052
BshFI GGCC 3 cut(s) 5, 280, 617
BshNI GGYRCC 1 cut(s) 1010
BsiHKAI GWGCWC 1 cut(s) 914
BsiSI CCGG 1 cut(s) 961
BslI CCNNNNNNNGG 5 cut(s) 203, 440, 504, 1007, 1067
BsmAI GTCTC 3 cut(s) 513, 591, 983
BsmI GAATGC 1 cut(s) 1002
BsnI GGCC 3 cut(s) 5, 280, 617
Bso31I GGTCTC 1 cut(s) 513
Bsp1286I GDGCHC 1 cut(s) 914
Bsp1407I TGTACA 1 cut(s) 646
Bsp143I GATC 2 cut(s) 50, 667
BspACI CCGC 1 cut(s) 1050
BspANI GGCC 3 cut(s) 5, 280, 617
BspCNI CTCAG 1 cut(s) 785
BspFNI CGCG 1 cut(s) 1052
BspLI GGNNCC 3 cut(s) 83, 705, 1012
BspMAI CTGCAG 1 cut(s) 718
BspMI ACCTGC 1 cut(s) 495
BspPI GGATC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 1010
BspTNI GGTCTC 1 cut(s) 513
BsrGI TGTACA 1 cut(s) 646
BsrI ACTGG 1 cut(s) 997
BssECI CCNNGG 2 cut(s) 498, 540
BssMI GATC 2 cut(s) 50, 667
BssT1I CCWWGG 2 cut(s) 498, 540
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 412, 529, 625
Bst6I CTCTTC 1 cut(s) 634
BstAUI TGTACA 1 cut(s) 646
BstDEI CTNAG 2 cut(s) 691, 772
BstENI CCTNNNNNAGG 1 cut(s) 1005
BstF5I GGATG 6 cut(s) 367, 409, 494, 527, 559, 978
BstFNI CGCG 1 cut(s) 1052
BstHHI GCGC 1 cut(s) 492
BstKTI GATC 2 cut(s) 53, 670
BstMAI GTCTC 3 cut(s) 513, 591, 983
BstMBI GATC 2 cut(s) 50, 667
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 2 cut(s) 326, 960
BstSFI CTRYAG 2 cut(s) 624, 714
BstUI CGCG 1 cut(s) 1052
BstV1I GCAGC 3 cut(s) 692, 707, 916
BstV2I GAAGAC 2 cut(s) 233, 767
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 3 cut(s) 5, 280, 617
BtrI CACGTC 1 cut(s) 431
BtsCI GGATG 6 cut(s) 367, 409, 494, 527, 559, 978
BtsI GCAGTG 1 cut(s) 711
BtsIMutI CAGTG 2 cut(s) 417, 711
BveI ACCTGC 1 cut(s) 495
CaiI CAGNNNCTG 1 cut(s) 713
CfoI GCGC 1 cut(s) 492
Cfr13I GGNCC 5 cut(s) 4, 484, 616, 703, 861
CseI GACGC 1 cut(s) 1041
Csp6I GTAC 2 cut(s) 530, 647
CspCI CAANNNNNGTGG 2 cut(s) 594, 629
CviAII CATG 2 cut(s) 794, 1015
CviQI GTAC 2 cut(s) 530, 647
DdeI CTNAG 2 cut(s) 691, 772
DpnI GATC 2 cut(s) 52, 669
DpnII GATC 2 cut(s) 50, 667
DraI TTTAAA 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 634
EarI CTCTTC 1 cut(s) 634
Ecl136II GAGCTC 1 cut(s) 912
Eco130I CCWWGG 2 cut(s) 498, 540
Eco147I AGGCCT 1 cut(s) 280
Eco24I GRGCYC 1 cut(s) 914
Eco31I GGTCTC 1 cut(s) 513
Eco47I GGWCC 3 cut(s) 484, 703, 861
Eco53kI GAGCTC 1 cut(s) 912
EcoICRI GAGCTC 1 cut(s) 912
EcoNI CCTNNNNNAGG 1 cut(s) 1005
EcoO109I RGGNCCY 3 cut(s) 484, 703, 861
EcoRI GAATTC 1 cut(s) 901
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 2 cut(s) 498, 540
EcoT22I ATGCAT 1 cut(s) 808
EcoT38I GRGCYC 1 cut(s) 914
ErhI CCWWGG 2 cut(s) 498, 540
FaeI CATG 2 cut(s) 797, 1018
FatI CATG 2 cut(s) 793, 1014
Fnu4HI GCNGC 3 cut(s) 681, 696, 930
FokI GGATG 6 cut(s) 374, 416, 481, 534, 546, 985
FriOI GRGCYC 1 cut(s) 914
Fsp4HI GCNGC 3 cut(s) 681, 696, 930
FspBI CTAG 3 cut(s) 512, 834, 1078
GlaI GCGC 1 cut(s) 491
GluI GCNGC 3 cut(s) 681, 696, 930
GsaI CCCAGC 1 cut(s) 710
GsuI CTGGAG 1 cut(s) 130
HaeIII GGCC 3 cut(s) 5, 280, 617
HapII CCGG 1 cut(s) 961
HgaI GACGC 1 cut(s) 1041
HhaI GCGC 1 cut(s) 492
Hin1II CATG 2 cut(s) 797, 1018
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HinfI GANTC 2 cut(s) 44, 731
HpaII CCGG 1 cut(s) 961
HphI GGTGA 2 cut(s) 455, 641
Hpy166II GTNNAC 2 cut(s) 958, 1056
Hpy188I TCNGA 5 cut(s) 60, 86, 736, 775, 916
Hpy188III TCNNGA 5 cut(s) 48, 155, 266, 378, 512
Hpy8I GTNNAC 2 cut(s) 958, 1056
HpyAV CCTTC 6 cut(s) 352, 409, 440, 449, 881, 1061
HpyCH4III ACNGT 3 cut(s) 412, 529, 625
HpyCH4IV ACGT 2 cut(s) 241, 430
HpyCH4V TGCA 7 cut(s) 10, 665, 716, 806, 830, 932, 1018
HpyF3I CTNAG 2 cut(s) 691, 772
HpySE526I ACGT 2 cut(s) 241, 430
Hsp92II CATG 2 cut(s) 797, 1018
HspAI GCGC 1 cut(s) 490
Kzo9I GATC 2 cut(s) 50, 667
Lsp1109I GCAGC 3 cut(s) 692, 707, 916
LweI GCATC 3 cut(s) 313, 568, 793
MaeI CTAG 3 cut(s) 512, 834, 1078
MaeII ACGT 2 cut(s) 241, 430
MalI GATC 2 cut(s) 52, 669
MboI GATC 2 cut(s) 50, 667
MboII GAAGA 7 cut(s) 190, 238, 648, 651, 772, 880, 883
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 50
MhlI GDGCHC 1 cut(s) 914
MluCI AATT 5 cut(s) 576, 654, 901, 933, 1031
MlyI GAGTC 1 cut(s) 740
MmeI TCCRAC 2 cut(s) 10, 966
MnlI CCTC 5 cut(s) 255, 264, 444, 463, 940
Mph1103I ATGCAT 1 cut(s) 808
MroXI GAANNNNTTC 1 cut(s) 1071
MseI TTAA 4 cut(s) 24, 579, 809, 966
MslI CAYNNNNRTG 1 cut(s) 564
MspA1I CMGCKG 1 cut(s) 124
MspI CCGG 1 cut(s) 961
MspR9I CCNGG 2 cut(s) 328, 962
MunI CAATTG 1 cut(s) 654
Mva1269I GAATGC 1 cut(s) 1002
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 1 cut(s) 1052
NciI CCSGG 1 cut(s) 962
NdeII GATC 2 cut(s) 50, 667
NlaIII CATG 2 cut(s) 797, 1018
NlaIV GGNNCC 3 cut(s) 83, 705, 1012
NsiI ATGCAT 1 cut(s) 808
NspI RCATGY 1 cut(s) 797
PceI AGGCCT 1 cut(s) 280
PctI GAATGC 1 cut(s) 1002
PdmI GAANNNNTTC 1 cut(s) 1071
PfeI GAWTC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 682, 697, 931
PleI GAGTC 1 cut(s) 739
PpsI GAGTC 1 cut(s) 739
PpuMI RGGWCCY 3 cut(s) 484, 703, 861
Psp124BI GAGCTC 1 cut(s) 914
Psp5II RGGWCCY 3 cut(s) 484, 703, 861
Psp6I CCWGG 1 cut(s) 326
PspFI CCCAGC 1 cut(s) 706
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 3 cut(s) 83, 705, 1012
PspPI GGNCC 5 cut(s) 4, 484, 616, 703, 861
PspPPI RGGWCCY 3 cut(s) 484, 703, 861
PstI CTGCAG 1 cut(s) 718
PstNI CAGNNNCTG 1 cut(s) 713
PsuI RGATCY 1 cut(s) 50
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 2 cut(s) 531, 648
RsaNI GTAC 2 cut(s) 530, 647
RseI CAYNNNNRTG 1 cut(s) 564
SacI GAGCTC 1 cut(s) 914
SaqAI TTAA 4 cut(s) 24, 579, 809, 966
SatI GCNGC 3 cut(s) 681, 696, 930
Sau3AI GATC 2 cut(s) 50, 667
Sau96I GGNCC 5 cut(s) 4, 484, 616, 703, 861
SchI GAGTC 1 cut(s) 740
ScrFI CCNGG 2 cut(s) 328, 962
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 3 cut(s) 313, 568, 793
SfcI CTRYAG 2 cut(s) 624, 714
SinI GGWCC 3 cut(s) 484, 703, 861
SmiMI CAYNNNNRTG 1 cut(s) 564
Sse9I AATT 5 cut(s) 576, 654, 901, 933, 1031
SseBI AGGCCT 1 cut(s) 280
SsiI CCGC 1 cut(s) 1050
SspI AATATT 2 cut(s) 143, 897
SspMI CTAG 3 cut(s) 512, 834, 1078
SstI GAGCTC 1 cut(s) 914
StuI AGGCCT 1 cut(s) 280
StyD4I CCNGG 2 cut(s) 326, 960
StyI CCWWGG 2 cut(s) 498, 540
TaaI ACNGT 3 cut(s) 412, 529, 625
TaiI ACGT 2 cut(s) 244, 433
TaqI TCGA 2 cut(s) 47, 905
TasI AATT 5 cut(s) 576, 654, 901, 933, 1031
TatI WGTACW 1 cut(s) 646
TfiI GAWTC 1 cut(s) 44
Tru1I TTAA 4 cut(s) 24, 579, 809, 966
Tru9I TTAA 4 cut(s) 24, 579, 809, 966
TscAI CASTG 2 cut(s) 417, 718
TseI GCWGC 3 cut(s) 680, 695, 929
TspDTI ATGAA 4 cut(s) 174, 420, 890, 989
TspRI CASTG 2 cut(s) 417, 718
VpaK11BI GGWCC 3 cut(s) 484, 703, 861
XagI CCTNNNNNAGG 1 cut(s) 1005
XapI RAATTY 2 cut(s) 901, 1031
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 1 cut(s) 797
XmnI GAANNNNTTC 1 cut(s) 1071
XspI CTAG 3 cut(s) 512, 834, 1078
Zsp2I ATGCAT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.