Rorug07G0129300

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0000683
Physical Location & Seq
Forward (+)
10243691 .. 10245157
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0129300.1

Sequence Viewer

Length: 915 bp
ATGCAGACCAGTAGCGCCGCTGCGAGTTCGTTAACCTCGCTCTCTCCCAGCTTCAACGCCTACTCTTCCTCCGACCGCCTTGCTCAGATCGCCGCGCGCGTCGTCAGCGAGTTTCGTCAAGAACTCGATGAGGCAGGTTTGGAAGACATTGATGATCTGTATGATAGCAATAACGACGCGCAATTCTCACCGCCGCGGTTGGAAGCGCAACAAGAGGCTGAAAACGACGACGTAAAGGAGGCGGCGGATGAGGAGGAGGAGGAGTTTGAGTTCGCTTTTGTGTGCAGAGAGGGAGAGGCGCCGACGTCGCCGATTGCGGCGGAGGAGGTTTTTTATAACGGTCAGATCAGGCCGGTATACCCGGTCTTCGACCAGAGCTTGCTTCTCCAAAACGACGACGACCTTGAATCATCCGACTCTACTCATGCCGTGAATAAAGATTCCGAGAGGCCGTCGACGGTTACGAAGCCGCGTCGTCAGCCGCTGAGAATGCTCATGATCGAGGAGGAGCGCGAGGCCGCGTCGTGCTCGTCTTCCGAGGCCGACGACCTGGAGAACCTGCCACCTGGCACTTACTGCGTGTGGGCCCCGCCCAAGGCTTCCGGAAAAGGTGGAGGAAGAAGCGGCGGGGGCTGCGATAAGAGCAGCTCGACCGGGTCGTCGAAGCGGTGGAAGTTTCGGGACCTTCTTTCTCGGAGCAGTAGCGACGGCGCCAAGGACACTCTCGTCTTTTTTGCTCCGACGACCAAGACCGCAGAGAAGGAGGGCAGTAACGTCGTAGTCGCGCGGAAAGGGAAGAGCAGCAAAGCCGTGGCTGATGGGGATAAACGGCGGTCGTTTCTGCCATACAGGCAGGACCTGGTGGGGTTTTTCTCTAATGTGAATGGGCTTAGTAGGAATTTGCATCCATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

304

Amino Acids

33.24

Weight (kDa)

4.64

Isoelectric Point (pI)

66.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1645 PF07816 107 - 270 6e-23 Protein of unknown function (DUF1645)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 336
AasI GACNNNNNNGTC 2 cut(s) 658, 725
AatII GACGTC 1 cut(s) 308
Acc36I ACCTGC 2 cut(s) 125, 567
AccB1I GGYRCC 2 cut(s) 298, 710
AccI GTMKAC 2 cut(s) 357, 455
AccIII TCCGGA 1 cut(s) 602
AcsI RAATTY 1 cut(s) 898
AcyI GRCGYC 3 cut(s) 299, 305, 711
AfiI CCNNNNNNNGG 1 cut(s) 595
AgsI TTSAA 2 cut(s) 55, 407
AjnI CCWGG 3 cut(s) 549, 565, 858
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 3 cut(s) 51, 378, 648
AluI AGCT 3 cut(s) 51, 378, 648
Alw21I GWGCWC 1 cut(s) 530
AlwNI CAGNNNCTG 2 cut(s) 484, 859
Aor13HI TCCGGA 1 cut(s) 602
AoxI GGCC 5 cut(s) 350, 449, 516, 540, 585
ApaI GGGCCC 1 cut(s) 589
ApeKI GCWGC 4 cut(s) 20, 633, 645, 801
ApoI RAATTY 1 cut(s) 898
AspLEI GCGC 9 cut(s) 17, 97, 99, 181, 208, 301, 513, 713, 787
AspS9I GGNCC 4 cut(s) 585, 586, 682, 856
AsuC2I CCSGG 2 cut(s) 362, 655
AsuHPI GGTGA 1 cut(s) 180
AvaII GGWCC 2 cut(s) 682, 856
BaeGI GKGCMC 1 cut(s) 589
BanI GGYRCC 2 cut(s) 298, 710
BanII GRGCYC 1 cut(s) 589
BbsI GAAGAC 3 cut(s) 150, 358, 525
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 4 cut(s) 7, 620, 657, 813
BccI CCATC 1 cut(s) 812
BceAI ACGGC 5 cut(s) 413, 436, 724, 794, 845
BcgI CGANNNNNNTGC 4 cut(s) 62, 96, 757, 791
BciT130I CCWGG 3 cut(s) 551, 567, 860
BcnI CCSGG 2 cut(s) 362, 655
BfoI RGCGCY 3 cut(s) 18, 302, 714
BfuAI ACCTGC 2 cut(s) 125, 567
BglI GCCNNNNNGGC 1 cut(s) 850
Bme1390I CCNGG 5 cut(s) 362, 551, 567, 655, 860
Bme18I GGWCC 2 cut(s) 682, 856
BmgT120I GGNCC 4 cut(s) 585, 586, 682, 856
BmiI GGNNCC 5 cut(s) 300, 587, 588, 683, 712
BmrFI CCNGG 5 cut(s) 362, 551, 567, 655, 860
BpiI GAAGAC 3 cut(s) 150, 358, 525
BpmI CTGGAG 1 cut(s) 572
BpuMI CCSGG 2 cut(s) 362, 655
BsaHI GRCGYC 3 cut(s) 299, 305, 711
BsaJI CCNNGG 5 cut(s) 194, 537, 594, 714, 810
BsaWI WCCGGW 1 cut(s) 602
BsaXI ACNNNNNCTCC 6 cut(s) 53, 83, 248, 254, 278, 284
Bsc4I CCNNNNNNNGG 1 cut(s) 595
Bse118I RCCGGY 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 602
BseBI CCWGG 3 cut(s) 551, 567, 860
BseDI CCNNGG 5 cut(s) 194, 537, 594, 714, 810
BseGI GGATG 3 cut(s) 253, 410, 904
BseLI CCNNNNNNNGG 1 cut(s) 595
BseMII CTCAG 2 cut(s) 98, 476
BseNI ACTGG 1 cut(s) 9
BsePI GCGCGC 1 cut(s) 95
BseRI GAGGAG 7 cut(s) 266, 269, 272, 275, 338, 518, 521
BseSI GKGCMC 1 cut(s) 589
BseXI GCAGC 4 cut(s) 7, 620, 657, 813
BseYI CCCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 304
Bsh1285I CGRYCG 3 cut(s) 76, 654, 836
BshFI GGCC 5 cut(s) 352, 451, 518, 542, 587
BshNI GGYRCC 2 cut(s) 298, 710
BsiEI CGRYCG 3 cut(s) 76, 654, 836
BsiHKAI GWGCWC 1 cut(s) 530
BsiSI CCGG 4 cut(s) 353, 362, 603, 654
BslFI GGGAC 1 cut(s) 695
BslI CCNNNNNNNGG 1 cut(s) 595
BsmFI GGGAC 1 cut(s) 695
BsmI GAATGC 1 cut(s) 495
BsnI GGCC 5 cut(s) 352, 451, 518, 542, 587
Bsp120I GGGCCC 1 cut(s) 585
Bsp1286I GDGCHC 2 cut(s) 530, 589
Bsp13I TCCGGA 1 cut(s) 602
Bsp143I GATC 4 cut(s) 87, 154, 345, 498
BspANI GGCC 5 cut(s) 352, 451, 518, 542, 587
BspCNI CTCAG 2 cut(s) 97, 477
BspEI TCCGGA 1 cut(s) 602
BspHI TCATGA 1 cut(s) 495
BspLI GGNNCC 5 cut(s) 300, 587, 588, 683, 712
BspMI ACCTGC 2 cut(s) 125, 567
BspQI GCTCTTC 1 cut(s) 791
BspT107I GGYRCC 2 cut(s) 298, 710
BsrFI RCCGGY 1 cut(s) 352
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 352
BssECI CCNNGG 5 cut(s) 194, 537, 594, 714, 810
BssHII GCGCGC 1 cut(s) 95
BssMI GATC 4 cut(s) 87, 154, 345, 498
BssNAI GTATAC 1 cut(s) 358
BssNI GRCGYC 3 cut(s) 299, 305, 711
BssT1I CCWWGG 2 cut(s) 594, 714
Bst1107I GTATAC 1 cut(s) 358
Bst2UI CCWGG 3 cut(s) 551, 567, 860
Bst4CI ACNGT 2 cut(s) 341, 460
Bst6I CTCTTC 2 cut(s) 70, 791
BstACI GRCGYC 3 cut(s) 299, 305, 711
BstAPI GCANNNNNTGC 1 cut(s) 576
BstC8I GCNNGC 2 cut(s) 97, 380
BstDEI CTNAG 3 cut(s) 84, 485, 890
BstDSI CCRYGG 2 cut(s) 194, 810
BstF5I GGATG 3 cut(s) 253, 410, 904
BstH2I RGCGCY 3 cut(s) 18, 302, 714
BstHHI GCGC 9 cut(s) 17, 97, 99, 181, 208, 301, 513, 713, 787
BstKTI GATC 4 cut(s) 90, 157, 348, 501
BstMBI GATC 4 cut(s) 87, 154, 345, 498
BstMCI CGRYCG 3 cut(s) 76, 654, 836
BstNI CCWGG 3 cut(s) 551, 567, 860
BstSCI CCNGG 5 cut(s) 360, 549, 565, 653, 858
BstSLI GKGCMC 1 cut(s) 589
BstV1I GCAGC 4 cut(s) 7, 620, 657, 813
BstV2I GAAGAC 3 cut(s) 150, 358, 525
BstZ17I GTATAC 1 cut(s) 358
BsuRI GGCC 5 cut(s) 352, 451, 518, 542, 587
BtgI CCRYGG 2 cut(s) 194, 810
BtsCI GGATG 3 cut(s) 253, 410, 904
BveI ACCTGC 2 cut(s) 125, 567
Cac8I GCNNGC 2 cut(s) 97, 380
CaiI CAGNNNCTG 2 cut(s) 484, 859
CciI TCATGA 1 cut(s) 495
CfoI GCGC 9 cut(s) 17, 97, 99, 181, 208, 301, 513, 713, 787
Cfr10I RCCGGY 1 cut(s) 352
Cfr13I GGNCC 4 cut(s) 585, 586, 682, 856
Cfr42I CCGCGG 1 cut(s) 197
CseI GACGC 4 cut(s) 88, 185, 461, 510
CsiI ACCWGGT 1 cut(s) 858
CviAII CATG 2 cut(s) 425, 496
DdeI CTNAG 3 cut(s) 84, 485, 890
DinI GGCGCC 2 cut(s) 300, 712
DpnI GATC 4 cut(s) 89, 156, 347, 500
DpnII GATC 4 cut(s) 87, 154, 345, 498
DrdI GACNNNNNNGTC 2 cut(s) 658, 725
DseDI GACNNNNNNGTC 2 cut(s) 658, 725
Eam1104I CTCTTC 2 cut(s) 70, 791
EarI CTCTTC 2 cut(s) 70, 791
EciI GGCGGA 2 cut(s) 260, 335
Eco130I CCWWGG 2 cut(s) 594, 714
Eco24I GRGCYC 1 cut(s) 589
Eco47I GGWCC 2 cut(s) 682, 856
EcoO109I RGGNCCY 3 cut(s) 586, 682, 856
EcoRII CCWGG 3 cut(s) 549, 565, 858
EcoT14I CCWWGG 2 cut(s) 594, 714
EcoT38I GRGCYC 1 cut(s) 589
EgeI GGCGCC 2 cut(s) 300, 712
EheI GGCGCC 2 cut(s) 300, 712
ErhI CCWWGG 2 cut(s) 594, 714
FaeI CATG 2 cut(s) 428, 499
FaiI YATR 6 cut(s) 162, 336, 358, 426, 497, 847
FaqI GGGAC 1 cut(s) 695
FatI CATG 2 cut(s) 424, 495
FauI CCCGC 2 cut(s) 597, 620
FblI GTMKAC 2 cut(s) 357, 455
FokI GGATG 3 cut(s) 260, 397, 891
FriOI GRGCYC 1 cut(s) 589
GlaI GCGC 9 cut(s) 16, 96, 98, 180, 207, 300, 512, 712, 786
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 1 cut(s) 572
HaeII RGCGCY 3 cut(s) 18, 302, 714
HaeIII GGCC 5 cut(s) 352, 451, 518, 542, 587
HapII CCGG 4 cut(s) 353, 362, 603, 654
HgaI GACGC 4 cut(s) 88, 185, 461, 510
HhaI GCGC 9 cut(s) 17, 97, 99, 181, 208, 301, 513, 713, 787
Hin1I GRCGYC 3 cut(s) 299, 305, 711
Hin1II CATG 2 cut(s) 428, 499
Hin6I GCGC 9 cut(s) 15, 95, 97, 179, 206, 299, 511, 711, 785
HinP1I GCGC 9 cut(s) 15, 95, 97, 179, 206, 299, 511, 711, 785
HincII GTYRAC 2 cut(s) 33, 456
HindII GTYRAC 2 cut(s) 33, 456
HinfI GANTC 3 cut(s) 407, 416, 440
HpaI GTTAAC 1 cut(s) 33
HpaII CCGG 4 cut(s) 353, 362, 603, 654
HphI GGTGA 1 cut(s) 180
Hpy166II GTNNAC 3 cut(s) 33, 358, 456
Hpy188I TCNGA 9 cut(s) 73, 87, 345, 415, 445, 538, 696, 741, 914
Hpy188III TCNNGA 4 cut(s) 119, 496, 603, 680
Hpy8I GTNNAC 3 cut(s) 33, 358, 456
HpyAV CCTTC 2 cut(s) 695, 754
HpyCH4III ACNGT 2 cut(s) 341, 460
HpyCH4IV ACGT 3 cut(s) 231, 305, 774
HpyCH4V TGCA 3 cut(s) 4, 285, 904
HpyF3I CTNAG 3 cut(s) 84, 485, 890
HpySE526I ACGT 3 cut(s) 231, 305, 774
Hsp92I GRCGYC 3 cut(s) 299, 305, 711
Hsp92II CATG 2 cut(s) 428, 499
HspAI GCGC 9 cut(s) 15, 95, 97, 179, 206, 299, 511, 711, 785
KasI GGCGCC 2 cut(s) 298, 710
Kpn2I TCCGGA 1 cut(s) 602
KspAI GTTAAC 1 cut(s) 33
KspI CCGCGG 1 cut(s) 197
Kzo9I GATC 4 cut(s) 87, 154, 345, 498
LguI GCTCTTC 1 cut(s) 791
LmnI GCTCC 3 cut(s) 508, 696, 742
Lsp1109I GCAGC 4 cut(s) 7, 620, 657, 813
MabI ACCWGGT 1 cut(s) 858
MaeII ACGT 3 cut(s) 231, 305, 774
MaeIII GTNAC 2 cut(s) 460, 770
MalI GATC 4 cut(s) 89, 156, 347, 500
MauBI CGCGCGCG 1 cut(s) 95
MboI GATC 4 cut(s) 87, 154, 345, 498
MboII GAAGA 6 cut(s) 57, 155, 358, 525, 630, 808
MhlI GDGCHC 2 cut(s) 530, 589
MluCI AATT 2 cut(s) 182, 898
Mly113I GGCGCC 2 cut(s) 299, 711
MlyI GAGTC 1 cut(s) 410
MmeI TCCRAC 4 cut(s) 96, 180, 438, 764
MroI TCCGGA 1 cut(s) 602
MseI TTAA 1 cut(s) 32
MspA1I CMGCKG 3 cut(s) 20, 196, 484
MspI CCGG 4 cut(s) 353, 362, 603, 654
MspR9I CCNGG 5 cut(s) 362, 551, 567, 655, 860
Mva1269I GAATGC 1 cut(s) 495
MvaI CCWGG 3 cut(s) 551, 567, 860
NarI GGCGCC 2 cut(s) 299, 711
NciI CCSGG 2 cut(s) 362, 655
NdeII GATC 4 cut(s) 87, 154, 345, 498
NlaIII CATG 2 cut(s) 428, 499
NlaIV GGNNCC 5 cut(s) 300, 587, 588, 683, 712
PagI TCATGA 1 cut(s) 495
PauI GCGCGC 1 cut(s) 95
PciSI GCTCTTC 1 cut(s) 791
PcsI WCGNNNNNNNCGW 3 cut(s) 96, 461, 656
PctI GAATGC 1 cut(s) 495
PfeI GAWTC 2 cut(s) 407, 440
PflFI GACNNNGTC 1 cut(s) 655
PleI GAGTC 1 cut(s) 410
PluTI GGCGCC 2 cut(s) 302, 714
PpsI GAGTC 1 cut(s) 410
PpuMI RGGWCCY 2 cut(s) 682, 856
PsiI TTATAA 1 cut(s) 336
Psp5II RGGWCCY 2 cut(s) 682, 856
Psp6I CCWGG 3 cut(s) 549, 565, 858
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 3 cut(s) 549, 565, 858
PspN4I GGNNCC 5 cut(s) 300, 587, 588, 683, 712
PspOMI GGGCCC 1 cut(s) 585
PspPI GGNCC 4 cut(s) 585, 586, 682, 856
PspPPI RGGWCCY 2 cut(s) 682, 856
PstNI CAGNNNCTG 2 cut(s) 484, 859
PsyI GACNNNGTC 1 cut(s) 655
PteI GCGCGC 1 cut(s) 95
SacII CCGCGG 1 cut(s) 197
SalI GTCGAC 1 cut(s) 454
SapI GCTCTTC 1 cut(s) 791
SaqAI TTAA 1 cut(s) 32
Sau3AI GATC 4 cut(s) 87, 154, 345, 498
Sau96I GGNCC 4 cut(s) 585, 586, 682, 856
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 5 cut(s) 362, 551, 567, 655, 860
SduI GDGCHC 2 cut(s) 530, 589
SexAI ACCWGGT 1 cut(s) 858
SfoI GGCGCC 2 cut(s) 300, 712
Sfr303I CCGCGG 1 cut(s) 197
SgrBI CCGCGG 1 cut(s) 197
SgrDI CGTCGACG 1 cut(s) 454
SinI GGWCC 2 cut(s) 682, 856
Sse9I AATT 2 cut(s) 182, 898
SspDI GGCGCC 2 cut(s) 298, 710
StyD4I CCNGG 5 cut(s) 360, 549, 565, 653, 858
StyI CCWWGG 2 cut(s) 594, 714
TaaI ACNGT 2 cut(s) 341, 460
TaiI ACGT 3 cut(s) 234, 308, 777
TaqI TCGA 6 cut(s) 126, 369, 455, 501, 650, 662
TasI AATT 2 cut(s) 182, 898
TauI GCSGC 9 cut(s) 20, 95, 196, 245, 320, 472, 484, 521, 627
TfiI GAWTC 2 cut(s) 407, 440
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 4 cut(s) 20, 633, 645, 801
Tth111I GACNNNGTC 1 cut(s) 655
VpaK11BI GGWCC 2 cut(s) 682, 856
XapI RAATTY 1 cut(s) 898
XmiI GTMKAC 2 cut(s) 357, 455
ZraI GACGTC 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.