Rh7AG261900

Tudor-like domain present in plant sequences.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000683
Physical Location & Seq
Forward (+)
26798896 .. 26812501
13606 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG261900.1

Sequence Viewer

Length: 1218 bp
ATGATGGGCTCGCATAACCTACCATTCAAAGTTGGGGAAGACATAGAATGGAGTTCATTCATGAAAGGTTATCGTGGTGCGTGGTTCCGATGTAAGATAAAAGATATTGGCTGGAGAAATGGTCAACTGTCATGTGCCTTGGAATATTATGACTTTCCAGATGAAAAATCAAAATGGGAAAAAATGTATCAAAGCAACCCTGCTGATAGTAAAAGGACAAGAAAAGAGAAGATATTGATGATGCGTCCTCCCTTTCCTCCCATGTGTAATGAAAGTAAAAGGCCTGATGTCAATACTATATCGGAAGTGGTAGTTATTGTCAATGATATCTGGAAGGTGGGAGATTTAGTTGATTGGTGGAAGGATGATTGTTATTGGTCTGGAAAAGTAGCAGAAGTATTAGGGGATGAAAAAGTTAAGGTTGAGTTGCCACTTCCTCCTGCTGGTGAAGGAGTTGAAGGAGAGACCTATGAGGCTTCTTGCAAGGACTTGCGTGCATCCCTGAATTGGTCTCTAGAAGGCGGTTGGACAGTGCCTACATCCAAGGAGAATGAAAATGGGCGTCCTTGTGCTCGAGTAATTAAGCCTGATAGTCAAGGGGACATTGCAAGCTTGATGGTCCAATCTTTGGATGATGGAAGAAGGGATGCCCAAGCTATTGCTGGTGTCAAGCAACCTTTAACAGGAAAGGACACGCCAACTGCAGAAACAAATATGGAGTCTGATGTGGCAGATAGTGGGTTTGAGAAGATGAGTTGCCCAGATTCTGTTTCAAAATTGCATGTTAAACATGCATCAAATGAAATGGAGGCAACTACAACTAGGGTAGACATACTTGATAACAAAAAGCCCTTAAAGAGAAAGAAAACTCATGTGGCAGATAGTGGGTTTGGGAAGATGAGTTGCTCAGATAGCGTTTCAAAATTGCATGTTGAAGAGGCATCAAATGAAATGGAGGCAACTACAACAAGGGTAGACATACTTGATAACACTATGCCCTTAAAGAGGAAGAAAACTCATGAAGACATAGTGTTAAATTCAACGAATTCTGATACATTAGAAGCTGCAATTTTGGACTTGGAAGAACTTGGAATCCACTTTTTGAATTTCAAAGTTAATTCCAAACCTAATCTGGAGAGTATTTCGAATCTGCATATTTCTGAGTTGCGCAGCATATGGTTGGCGAGATTAATTGACGTGTCAAATTGGCGAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Agenet

Protein Analysis

405

Amino Acids

45.57

Weight (kDa)

5.48

Isoelectric Point (pI)

37.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Agenet PF05641 12 - 86 1.3e-09 Agenet domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1169
AccB7I CCANNNNNTGG 1 cut(s) 628
AccI GTMKAC 2 cut(s) 828, 975
AciI CCGC 1 cut(s) 522
AcsI RAATTY 3 cut(s) 1036, 1045, 1105
AcyI GRCGYC 1 cut(s) 562
AfiI CCNNNNNNNGG 5 cut(s) 443, 507, 628, 683, 1005
AflIII ACRYGT 1 cut(s) 1197
AgsI TTSAA 8 cut(s) 28, 458, 774, 921, 935, 1041, 1105, 1111
AjiI CACGTC 1 cut(s) 1198
AloI GAACNNNNNNTCC 2 cut(s) 1077, 1109
AluBI AGCT 4 cut(s) 612, 656, 1064, 1214
AluI AGCT 4 cut(s) 612, 656, 1064, 1214
Alw21I GWGCWC 1 cut(s) 574
Alw26I GTCTC 2 cut(s) 458, 516
AlwNI CAGNNNCTG 1 cut(s) 767
Ama87I CYCGRG 1 cut(s) 573
AoxI GGCC 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 1064, 1170
ApoI RAATTY 3 cut(s) 1036, 1045, 1105
ArsI GACNNNNNNTTYG 2 cut(s) 704, 736
AseI ATTAAT 1 cut(s) 1190
AspLEI GCGC 1 cut(s) 1170
AspS9I GGNCC 1 cut(s) 619
AsuHPI GGTGA 1 cut(s) 458
AsuII TTCGAA 1 cut(s) 1145
AvaI CYCGRG 1 cut(s) 573
AvaII GGWCC 1 cut(s) 619
BanII GRGCYC 1 cut(s) 11
BbsI GAAGAC 2 cut(s) 45, 1029
Bbv12I GWGCWC 1 cut(s) 574
BbvI GCAGC 2 cut(s) 1051, 1182
BccI CCATC 2 cut(s) 610, 629
BcoDI GTCTC 2 cut(s) 458, 516
BfaI CTAG 2 cut(s) 515, 822
BfmI CTRYAG 1 cut(s) 702
BisI GCNGC 2 cut(s) 1065, 1171
BlsI GCNGC 2 cut(s) 1066, 1172
Bme18I GGWCC 1 cut(s) 619
BmeT110I CYCGRG 1 cut(s) 573
BmgBI CACGTC 1 cut(s) 1198
BmgT120I GGNCC 1 cut(s) 619
BmiI GGNNCC 1 cut(s) 86
BmsI GCATC 5 cut(s) 231, 506, 637, 803, 950
BpiI GAAGAC 2 cut(s) 45, 1029
BpmI CTGGAG 2 cut(s) 133, 1154
Bpu14I TTCGAA 1 cut(s) 1145
BsaHI GRCGYC 1 cut(s) 562
BsaI GGTCTC 2 cut(s) 458, 516
BsaJI CCNNGG 2 cut(s) 138, 543
BsaXI ACNNNNNCTCC 4 cut(s) 106, 136, 333, 363
Bsc4I CCNNNNNNNGG 5 cut(s) 443, 507, 628, 683, 1005
Bse3DI GCAATG 1 cut(s) 603
BseDI CCNNGG 2 cut(s) 138, 543
BseGI GGATG 6 cut(s) 370, 412, 497, 539, 637, 652
BseLI CCNNNNNNNGG 5 cut(s) 443, 507, 628, 683, 1005
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 2 cut(s) 921, 1152
BseXI GCAGC 2 cut(s) 1051, 1182
BshFI GGCC 1 cut(s) 283
BsiHKAI GWGCWC 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 573
BslFI GGGAC 1 cut(s) 614
BslI CCNNNNNNNGG 5 cut(s) 443, 507, 628, 683, 1005
BsmAI GTCTC 2 cut(s) 458, 516
BsmFI GGGAC 1 cut(s) 614
BsnI GGCC 1 cut(s) 283
Bso31I GGTCTC 2 cut(s) 458, 516
BsoBI CYCGRG 1 cut(s) 573
Bsp119I TTCGAA 1 cut(s) 1145
Bsp1286I GDGCHC 2 cut(s) 11, 574
BspACI CCGC 1 cut(s) 522
BspANI GGCC 1 cut(s) 283
BspCNI CTCAG 2 cut(s) 920, 1153
BspHI TCATGA 2 cut(s) 60, 1018
BspLI GGNNCC 1 cut(s) 86
BspMAI CTGCAG 1 cut(s) 706
BspT104I TTCGAA 1 cut(s) 1145
BspTNI GGTCTC 2 cut(s) 458, 516
BsrDI GCAATG 1 cut(s) 603
BssECI CCNNGG 2 cut(s) 138, 543
BssNI GRCGYC 1 cut(s) 562
BssT1I CCWWGG 2 cut(s) 138, 543
Bst4CI ACNGT 2 cut(s) 129, 532
Bst6I CTCTTC 1 cut(s) 930
BstACI GRCGYC 1 cut(s) 562
BstBI TTCGAA 1 cut(s) 1145
BstC8I GCNNGC 4 cut(s) 11, 495, 610, 1212
BstDEI CTNAG 2 cut(s) 907, 1161
BstENI CCTNNNNNAGG 2 cut(s) 681, 1003
BstF5I GGATG 6 cut(s) 370, 412, 497, 539, 637, 652
BstHHI GCGC 1 cut(s) 1170
BstMAI GTCTC 2 cut(s) 458, 516
BstMWI GCNNNNNNNGC 1 cut(s) 912
BstNSI RCATGY 3 cut(s) 785, 794, 932
BstSFI CTRYAG 1 cut(s) 702
BstV1I GCAGC 2 cut(s) 1051, 1182
BstV2I GAAGAC 2 cut(s) 45, 1029
BsuRI GGCC 1 cut(s) 283
BtrI CACGTC 1 cut(s) 1198
BtsCI GGATG 6 cut(s) 370, 412, 497, 539, 637, 652
BtsIMutI CAGTG 1 cut(s) 537
Cac8I GCNNGC 4 cut(s) 11, 495, 610, 1212
CaiI CAGNNNCTG 1 cut(s) 767
CciI TCATGA 2 cut(s) 60, 1018
CfoI GCGC 1 cut(s) 1170
Cfr13I GGNCC 1 cut(s) 619
CseI GACGC 2 cut(s) 233, 551
CviAII CATG 8 cut(s) 61, 132, 262, 782, 791, 872, 929, 1019
DdeI CTNAG 2 cut(s) 907, 1161
Eam1104I CTCTTC 1 cut(s) 930
EarI CTCTTC 1 cut(s) 930
Eco130I CCWWGG 2 cut(s) 138, 543
Eco147I AGGCCT 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 11
Eco31I GGTCTC 2 cut(s) 458, 516
Eco32I GATATC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 619
Eco88I CYCGRG 1 cut(s) 573
EcoNI CCTNNNNNAGG 2 cut(s) 681, 1003
EcoRI GAATTC 1 cut(s) 1045
EcoRV GATATC 1 cut(s) 328
EcoT14I CCWWGG 2 cut(s) 138, 543
EcoT22I ATGCAT 1 cut(s) 796
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 2 cut(s) 138, 543
FaeI CATG 8 cut(s) 64, 135, 265, 785, 794, 875, 932, 1022
FaqI GGGAC 1 cut(s) 614
FatI CATG 8 cut(s) 60, 131, 261, 781, 790, 871, 928, 1018
FauNDI CATATG 1 cut(s) 1175
FblI GTMKAC 2 cut(s) 828, 975
Fnu4HI GCNGC 2 cut(s) 1065, 1171
FokI GGATG 6 cut(s) 377, 419, 484, 526, 644, 659
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 1065, 1171
FspBI CTAG 2 cut(s) 515, 822
FspI TGCGCA 1 cut(s) 1169
GlaI GCGC 1 cut(s) 1169
GluI GCNGC 2 cut(s) 1065, 1171
GsuI CTGGAG 2 cut(s) 133, 1154
HaeIII GGCC 1 cut(s) 283
HgaI GACGC 2 cut(s) 233, 551
HhaI GCGC 1 cut(s) 1170
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 8 cut(s) 64, 135, 265, 785, 794, 875, 932, 1022
Hin6I GCGC 1 cut(s) 1168
HinP1I GCGC 1 cut(s) 1168
HincII GTYRAC 1 cut(s) 125
HindII GTYRAC 1 cut(s) 125
HindIII AAGCTT 1 cut(s) 610
HinfI GANTC 4 cut(s) 719, 764, 1092, 1147
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 3 cut(s) 125, 829, 976
Hpy188I TCNGA 6 cut(s) 89, 304, 724, 910, 1051, 1162
Hpy188III TCNNGA 7 cut(s) 61, 158, 331, 381, 515, 1019, 1133
Hpy8I GTNNAC 3 cut(s) 125, 829, 976
HpyAV CCTTC 6 cut(s) 328, 355, 443, 452, 512, 636
HpyCH4III ACNGT 2 cut(s) 129, 532
HpyCH4IV ACGT 1 cut(s) 1197
HpyCH4V TGCA 9 cut(s) 483, 497, 608, 704, 781, 794, 928, 1067, 1153
HpyF10VI GCNNNNNNNGC 1 cut(s) 912
HpyF3I CTNAG 2 cut(s) 907, 1161
HpySE526I ACGT 1 cut(s) 1197
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 8 cut(s) 64, 135, 265, 785, 794, 875, 932, 1022
HspAI GCGC 1 cut(s) 1168
Lsp1109I GCAGC 2 cut(s) 1051, 1182
LweI GCATC 5 cut(s) 231, 506, 637, 803, 950
MaeI CTAG 2 cut(s) 515, 822
MaeII ACGT 1 cut(s) 1197
MboII GAAGA 9 cut(s) 50, 241, 651, 760, 907, 947, 1021, 1034, 1094
MhlI GDGCHC 2 cut(s) 11, 574
MlyI GAGTC 1 cut(s) 728
MmeI TCCRAC 1 cut(s) 506
MnlI CCTC 8 cut(s) 258, 267, 447, 466, 802, 931, 949, 999
Mph1103I ATGCAT 1 cut(s) 796
MwoI GCNNNNNNNGC 1 cut(s) 912
NdeI CATATG 1 cut(s) 1175
NlaIII CATG 8 cut(s) 64, 135, 265, 785, 794, 875, 932, 1022
NlaIV GGNNCC 1 cut(s) 86
NsbI TGCGCA 1 cut(s) 1169
NsiI ATGCAT 1 cut(s) 796
NspI RCATGY 3 cut(s) 785, 794, 932
NspV TTCGAA 1 cut(s) 1145
PaeR7I CTCGAG 1 cut(s) 573
PagI TCATGA 2 cut(s) 60, 1018
PceI AGGCCT 1 cut(s) 283
PfeI GAWTC 3 cut(s) 764, 1092, 1147
PflMI CCANNNNNTGG 1 cut(s) 628
PkrI GCNGC 2 cut(s) 1066, 1172
PleI GAGTC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 727
PshBI ATTAAT 1 cut(s) 1190
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 619
PspXI VCTCGAGB 1 cut(s) 573
PstI CTGCAG 1 cut(s) 706
PstNI CAGNNNCTG 1 cut(s) 767
SatI GCNGC 2 cut(s) 1065, 1171
Sau96I GGNCC 1 cut(s) 619
SchI GAGTC 1 cut(s) 728
SduI GDGCHC 2 cut(s) 11, 574
SfaNI GCATC 5 cut(s) 231, 506, 637, 803, 950
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 573
SfuI TTCGAA 1 cut(s) 1145
SinI GGWCC 1 cut(s) 619
SlaI CTCGAG 1 cut(s) 573
SmlI CTYRAG 1 cut(s) 573
SmoI CTYRAG 1 cut(s) 573
SseBI AGGCCT 1 cut(s) 283
SsiI CCGC 1 cut(s) 522
SspI AATATT 1 cut(s) 146
SspMI CTAG 2 cut(s) 515, 822
StuI AGGCCT 1 cut(s) 283
StyI CCWWGG 2 cut(s) 138, 543
TaaI ACNGT 2 cut(s) 129, 532
TaiI ACGT 1 cut(s) 1200
TaqI TCGA 2 cut(s) 574, 1145
TfiI GAWTC 3 cut(s) 764, 1092, 1147
TscAI CASTG 1 cut(s) 537
TseI GCWGC 2 cut(s) 1064, 1170
TspRI CASTG 1 cut(s) 537
Van91I CCANNNNNTGG 1 cut(s) 628
VpaK11BI GGWCC 1 cut(s) 619
VspI ATTAAT 1 cut(s) 1190
XagI CCTNNNNNAGG 2 cut(s) 681, 1003
XapI RAATTY 3 cut(s) 1036, 1045, 1105
XbaI TCTAGA 1 cut(s) 514
XceI RCATGY 3 cut(s) 785, 794, 932
XcmI CCANNNNNNNNNTGG 2 cut(s) 659, 1129
XhoI CTCGAG 1 cut(s) 573
XmiI GTMKAC 2 cut(s) 828, 975
XspI CTAG 2 cut(s) 515, 822
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.