Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0040727.1

Orthogroup ID

OG0018531

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1965

Gene Structure 1965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0040727.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 674 bp

atgctgaattgggattgcagcagatttcttgataagctagattccaatttgaaagcaataaatgcaaatattctaatttgcatcttttggaggttgatggaggcatttctatctgcgatgcctgcagatgtctcattggatggtgatgggaagtgggttagctggctcagggaattgtttgccttcttctcaggctgtcagtttaagaacatatttaaggagcaccgtcattacgttgtcacaaagtgcaagatatctgctgtttctttccttgccaagtttttcacagaagaagacgttcctgttgcagtccaggtcgagagtcttcactgtttttcctatctgtgtcttcaatcagaagttagattgccaattcaatttcttgctgaatttccatctcttcttgttccactggctagttgtaaccaggagataagaaatgttgccatgaattgtgttgagggtttacagaccttttcatctcatgttgactctttgagcaagaaaaatggaaaccgtgcaattcggattaatcatcttgataagctgctggacttgttggtccagcagaaaaggctaatcctatcggacaggaacttgcttccttctctcttggcctctttgctcagcccgtccttccagagcttcttaggaccaaagaatattgagataag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

224

Amino Acids

25.52

Weight (kDa)

7.57

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018531)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g18830
rosa_chinensis	RchiOBHm_Chr1g0354361
rosa_laevigata	RLG00000018687 RLG00000032846
rosa_multiflora	Rmu_sc0033015.1_g000001 Rmu_sc0040727.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298700 Rroxscaffold_4G00308750
rosa_rugosa	Rorug05G0277500
rosa_samantha	Rh1AG091400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	560
AcsI	RAATTY	1 cut(s)	389
AdeI	CACNNNGTG	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	52, 353, 377
AjnI	CCWGG	2 cut(s)	312, 426
AluBI	AGCT	4 cut(s)	37, 162, 547, 645
AluI	AGCT	4 cut(s)	37, 162, 547, 645
Alw21I	GWGCWC	1 cut(s)	225
Alw26I	GTCTC	1 cut(s)	136
AoxI	GGCC	1 cut(s)	615
ApeKI	GCWGC	2 cut(s)	18, 547
ApoI	RAATTY	1 cut(s)	389
AseI	ATTAAT	1 cut(s)	531
Asp700I	GAANNNNTTC	1 cut(s)	297
AspS9I	GGNCC	2 cut(s)	562, 653
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	562, 653
BbsI	GAAGAC	3 cut(s)	300, 317, 341
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	30, 534
BccI	CCATC	4 cut(s)	91, 134, 140, 403
BciT130I	CCWGG	2 cut(s)	314, 428
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	2 cut(s)	38, 417
BfmI	CTRYAG	1 cut(s)	123
BisI	GCNGC	2 cut(s)	19, 548
BlpI	GCTNAGC	1 cut(s)	626
BlsI	GCNGC	2 cut(s)	20, 549
Bme1390I	CCNGG	2 cut(s)	314, 428
Bme18I	GGWCC	2 cut(s)	562, 653
BmgT120I	GGNCC	2 cut(s)	562, 653
BmrFI	CCNGG	2 cut(s)	314, 428
BmsI	GCATC	2 cut(s)	90, 108
BpiI	GAAGAC	3 cut(s)	300, 317, 341
Bpu10I	CCTNAGC	1 cut(s)	167
Bpu1102I	GCTNAGC	1 cut(s)	626
Bse1I	ACTGG	1 cut(s)	417
BseBI	CCWGG	2 cut(s)	314, 428
BseGI	GGATG	1 cut(s)	145
BseMII	CTCAG	3 cut(s)	181, 204, 640
BseNI	ACTGG	1 cut(s)	417
BseXI	GCAGC	2 cut(s)	30, 534
BshFI	GGCC	1 cut(s)	617
BsiHKAI	GWGCWC	1 cut(s)	225
BsmAI	GTCTC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	617
Bsp1286I	GDGCHC	1 cut(s)	225
Bsp1720I	GCTNAGC	1 cut(s)	626
BspANI	GGCC	1 cut(s)	617
BspCNI	CTCAG	3 cut(s)	180, 203, 639
BspMAI	CTGCAG	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	314, 428
Bst4CI	ACNGT	3 cut(s)	227, 332, 518
Bst6I	CTCTTC	1 cut(s)	405
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	2 cut(s)	123, 164
BstDEI	CTNAG	4 cut(s)	167, 190, 626, 649
BstF5I	GGATG	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 122, 574
BstNI	CCWGG	2 cut(s)	314, 428
BstSCI	CCNGG	2 cut(s)	312, 426
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	2 cut(s)	30, 534
BstV2I	GAAGAC	3 cut(s)	300, 317, 341
BsuRI	GGCC	1 cut(s)	617
BtgZI	GCGATG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	145
BtsIMutI	CAGTG	2 cut(s)	328, 410
Cac8I	GCNNGC	2 cut(s)	123, 164
Cfr13I	GGNCC	2 cut(s)	562, 653
CviAII	CATG	2 cut(s)	448, 485
DdeI	CTNAG	4 cut(s)	167, 190, 626, 649
DraIII	CACNNNGTG	1 cut(s)	246
DrdI	GACNNNNNNGTC	1 cut(s)	560
DseDI	GACNNNNNNGTC	1 cut(s)	560
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	562, 653
EcoRII	CCWGG	2 cut(s)	312, 426
EcoRV	GATATC	1 cut(s)	255
FaeI	CATG	2 cut(s)	451, 488
FaiI	YATR	3 cut(s)	212, 449, 486
FatI	CATG	2 cut(s)	447, 484
Fnu4HI	GCNGC	2 cut(s)	19, 548
FokI	GGATG	1 cut(s)	152
Fsp4HI	GCNGC	2 cut(s)	19, 548
FspBI	CTAG	2 cut(s)	38, 417
GluI	GCNGC	2 cut(s)	19, 548
HaeIII	GGCC	1 cut(s)	617
Hin1II	CATG	2 cut(s)	451, 488
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HinfI	GANTC	3 cut(s)	41, 322, 491
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	2 cut(s)	467, 490
Hpy188I	TCNGA	3 cut(s)	358, 528, 589
Hpy188III	TCNNGA	4 cut(s)	29, 319, 539, 640
Hpy8I	GTNNAC	2 cut(s)	467, 490
HpyAV	CCTTC	3 cut(s)	193, 615, 646
HpyCH4III	ACNGT	3 cut(s)	227, 332, 518
HpyCH4IV	ACGT	2 cut(s)	234, 297
HpyCH4V	TGCA	7 cut(s)	18, 65, 81, 125, 249, 308, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 122, 574
HpyF3I	CTNAG	4 cut(s)	167, 190, 626, 649
HpySE526I	ACGT	2 cut(s)	234, 297
Hsp92II	CATG	2 cut(s)	451, 488
LmnI	GCTCC	1 cut(s)	220
Lsp1109I	GCAGC	2 cut(s)	30, 534
LweI	GCATC	2 cut(s)	90, 108
MaeI	CTAG	2 cut(s)	38, 417
MaeII	ACGT	2 cut(s)	234, 297
MaeIII	GTNAC	2 cut(s)	238, 422
MboII	GAAGA	6 cut(s)	178, 302, 305, 317, 341, 392
MhlI	GDGCHC	1 cut(s)	225
MluCI	AATT	9 cut(s)	7, 46, 75, 173, 372, 377, 389, 451, 522
MlyI	GAGTC	2 cut(s)	331, 485
MnlI	CCTC	4 cut(s)	84, 94, 454, 628
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	3 cut(s)	204, 216, 531
MspR9I	CCNGG	2 cut(s)	314, 428
MvaI	CCWGG	2 cut(s)	314, 428
MwoI	GCNNNNNNNGC	3 cut(s)	62, 122, 574
NlaIII	CATG	2 cut(s)	451, 488
NmuCI	GTSAC	1 cut(s)	238
PdmI	GAANNNNTTC	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	2 cut(s)	20, 549
PleI	GAGTC	2 cut(s)	330, 485
PpsI	GAGTC	2 cut(s)	330, 485
PshBI	ATTAAT	1 cut(s)	531
Psp6I	CCWGG	2 cut(s)	312, 426
PspGI	CCWGG	2 cut(s)	312, 426
PspPI	GGNCC	2 cut(s)	562, 653
PstI	CTGCAG	1 cut(s)	127
SaqAI	TTAA	3 cut(s)	204, 216, 531
SatI	GCNGC	2 cut(s)	19, 548
Sau96I	GGNCC	2 cut(s)	562, 653
SchI	GAGTC	2 cut(s)	331, 485
ScrFI	CCNGG	2 cut(s)	314, 428
SduI	GDGCHC	1 cut(s)	225
SetI	ASST	9 cut(s)	39, 95, 164, 237, 300, 318, 476, 549, 647
SfaNI	GCATC	2 cut(s)	90, 108
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	2 cut(s)	562, 653
Sse9I	AATT	9 cut(s)	7, 46, 75, 173, 372, 377, 389, 451, 522
SspI	AATATT	2 cut(s)	70, 664
SspMI	CTAG	2 cut(s)	38, 417
StyD4I	CCNGG	2 cut(s)	312, 426
TaaI	ACNGT	3 cut(s)	227, 332, 518
TaiI	ACGT	2 cut(s)	237, 300
TaqI	TCGA	1 cut(s)	318
TasI	AATT	9 cut(s)	7, 46, 75, 173, 372, 377, 389, 451, 522
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	204, 216, 531
Tru9I	TTAA	3 cut(s)	204, 216, 531
TscAI	CASTG	2 cut(s)	335, 417
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	2 cut(s)	18, 547
Tsp45I	GTSAC	1 cut(s)	238
TspDTI	ATGAA	2 cut(s)	464, 468
TspRI	CASTG	2 cut(s)	335, 417
VpaK11BI	GGWCC	2 cut(s)	562, 653
VspI	ATTAAT	1 cut(s)	531
XapI	RAATTY	1 cut(s)	389
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	2 cut(s)	38, 417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.