Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0018531

Physical Location & Seq

Genomic Coordinates Reverse (-)

18508360 .. 18509326

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGAATTGTATTGAGGTTTACAGACCTTTTCATCTCATGTTTGACACTTCGAGCAAGAAAAATGGAAACCATGCAATTTGGATTAATCATCTTGATAAGCTACTGGACTTGGTGGTCCAGCAGAAAAGGCTAATCCTATTGGACAAGAACTTGCTTCCTTCTCTCTTGGCCTCTTTTCTCAGCCCGTCCTTCCAGAGCTTCTTAGGACCAAAGAATATTGAGATAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

76

Amino Acids

8.82

Weight (kDa)

9.36

Isoelectric Point (pI)

55.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018531)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g18830
rosa_chinensis	RchiOBHm_Chr1g0354361
rosa_laevigata	RLG00000018687 RLG00000032846
rosa_multiflora	Rmu_sc0033015.1_g000001 Rmu_sc0040727.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298700 Rroxscaffold_4G00308750
rosa_rugosa	Rorug05G0277500
rosa_samantha	Rh1AG091400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	113
AluBI	AGCT	2 cut(s)	100, 198
AluI	AGCT	2 cut(s)	100, 198
AoxI	GGCC	1 cut(s)	168
AseI	ATTAAT	1 cut(s)	84
AspS9I	GGNCC	2 cut(s)	115, 206
AvaII	GGWCC	2 cut(s)	115, 206
Bme18I	GGWCC	2 cut(s)	115, 206
BmgT120I	GGNCC	2 cut(s)	115, 206
Bse1I	ACTGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	108
BstDEI	CTNAG	2 cut(s)	179, 202
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BsuRI	GGCC	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	115, 206
CviAII	CATG	2 cut(s)	37, 71
CviJI	RGCY	5 cut(s)	100, 130, 170, 183, 198
CviKI_1	RGCY	5 cut(s)	100, 130, 170, 183, 198
DdeI	CTNAG	2 cut(s)	179, 202
DrdI	GACNNNNNNGTC	1 cut(s)	113
DseDI	GACNNNNNNGTC	1 cut(s)	113
Eco47I	GGWCC	2 cut(s)	115, 206
FaeI	CATG	2 cut(s)	40, 74
FaiI	YATR	2 cut(s)	38, 72
FatI	CATG	2 cut(s)	36, 70
HaeIII	GGCC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	40, 74
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188III	TCNNGA	2 cut(s)	92, 193
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	168, 199
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	2 cut(s)	179, 202
Hsp92II	CATG	2 cut(s)	40, 74
LpnPI	CCDG	3 cut(s)	89, 131, 206
MluCI	AATT	2 cut(s)	4, 75
MnlI	CCTC	2 cut(s)	7, 181
MseI	TTAA	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	127
NlaIII	CATG	2 cut(s)	40, 74
PshBI	ATTAAT	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	115, 206
SaqAI	TTAA	1 cut(s)	84
Sau96I	GGNCC	2 cut(s)	115, 206
SetI	ASST	5 cut(s)	18, 28, 102, 200, 230
SinI	GGWCC	2 cut(s)	115, 206
Sse9I	AATT	2 cut(s)	4, 75
SspI	AATATT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	50
TasI	AATT	2 cut(s)	4, 75
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	17, 20
VpaK11BI	GGWCC	2 cut(s)	115, 206
VspI	ATTAAT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.