Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0033015.1

Orthogroup ID

OG0018531

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1855

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0033015.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ttaataaacccatctgatcttattgaagtactggacaatctgcttagaagatgcattggtcttttaacaaggtcattggagaacaatagcctagcatgtgatgttgctattttgtgcctaaagaatgctgttgctgacatccatgagaatgttgaatgttgcaataaactagctgctatgatatttcctttgctccttgttgtacctaagacacagaggttaaatttgaaagcattggaattagctaaggcagtaaaatggccactgtttgagaatcttgctgctgcatgcaatacagaacaaacattacaaccaggaaggttatcctccattaacatggccaccattactagtttggcgagcagattcttgttgcaccctgcagaatttatgccttggcttgttcagagttctaatgactttgagttgtcaaagacgcacttctttttggtgatgatgcagacaattctgattgaaaaggaatctgctgaatgtttggaactttttgaagttttgtttcctgcattgaagacggaatgggaatcatttgagtctacgggtgatatctctatagcagagttcaaaacagagatgctgaattgggattgcagcagatttcttgataagctagattccaatttgaaagcaataaatgcaaatattctaatttgcatcttttggaggttgatggaggcatttctatctgcgatgcctgcagatgtctcattggatggtgatgggaagtgggttagctggctcagggaattgtttgccttcttctcaggctgtcagtttaagaacatatttaaggagcaccgtcattacgttgtcacaaagtgcaagatatctgctgtttctttccttgccaagtttttcacagaagaaggtgcatccccttcgacaaaatatctaatataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006355 GO:0006356 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0019219 GO:0019222 GO:0022613 GO:0030490 GO:0030515 GO:0030684 GO:0030686 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032040 GO:0032991 GO:0034455 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0042274 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0045893 GO:0045935 GO:0045943 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

BP28CT U3snoRNP10

Protein Analysis

305

Amino Acids

34.58

Weight (kDa)

5.39

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018531)

Species	Orthologous Gene IDs
pyrus_communis	pycom01g18830
rosa_chinensis	RchiOBHm_Chr1g0354361
rosa_laevigata	RLG00000018687 RLG00000032846
rosa_multiflora	Rmu_sc0033015.1_g000001 Rmu_sc0040727.1_g000001
rosa_roxburghii	Rroxscaffold_4G00298700 Rroxscaffold_4G00308750
rosa_rugosa	Rorug05G0277500
rosa_samantha	Rh1AG091400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	554
AcoI	YGGCCR	2 cut(s)	260, 339
AcsI	RAATTY	2 cut(s)	223, 386
AdeI	CACNNNGTG	1 cut(s)	837
AfaI	GTAC	2 cut(s)	30, 204
AgsI	TTSAA	8 cut(s)	26, 155, 229, 476, 509, 529, 583, 643
AhlI	ACTAGT	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	313
AluBI	AGCT	4 cut(s)	173, 245, 628, 753
AluI	AGCT	4 cut(s)	173, 245, 628, 753
Alw21I	GWGCWC	1 cut(s)	816
Alw26I	GTCTC	1 cut(s)	727
AoxI	GGCC	2 cut(s)	260, 339
ApeKI	GCWGC	4 cut(s)	173, 281, 284, 609
ApoI	RAATTY	2 cut(s)	223, 386
AsuHPI	GGTGA	3 cut(s)	463, 572, 746
BalI	TGGCCA	2 cut(s)	262, 341
BbsI	GAAGAC	1 cut(s)	536
Bbv12I	GWGCWC	1 cut(s)	816
BbvI	GCAGC	4 cut(s)	160, 268, 271, 621
BccI	CCATC	4 cut(s)	19, 682, 725, 731
BcgI	CGANNNNNNTGC	2 cut(s)	879, 913
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	727
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	4 cut(s)	92, 170, 351, 629
BfmI	CTRYAG	3 cut(s)	381, 570, 714
BisI	GCNGC	4 cut(s)	174, 282, 285, 610
BlsI	GCNGC	4 cut(s)	175, 283, 286, 611
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	6 cut(s)	41, 447, 582, 681, 699, 899
BpiI	GAAGAC	1 cut(s)	536
Bpu10I	CCTNAGC	2 cut(s)	246, 758
BsaJI	CCNNGG	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	36
BseBI	CCWGG	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	395
BseGI	GGATG	3 cut(s)	138, 736, 890
BseMII	CTCAG	2 cut(s)	772, 795
BseNI	ACTGG	1 cut(s)	36
BseXI	GCAGC	4 cut(s)	160, 268, 271, 621
BshFI	GGCC	2 cut(s)	262, 341
BsiHKAI	GWGCWC	1 cut(s)	816
BsmAI	GTCTC	1 cut(s)	727
BsmI	GAATGC	1 cut(s)	130
BsnI	GGCC	2 cut(s)	262, 341
Bsp1286I	GDGCHC	1 cut(s)	816
Bsp143I	GATC	1 cut(s)	16
BspANI	GGCC	2 cut(s)	262, 341
BspCNI	CTCAG	2 cut(s)	771, 794
BspMAI	CTGCAG	2 cut(s)	385, 718
BsrI	ACTGG	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	1 cut(s)	16
BssT1I	CCWWGG	1 cut(s)	395
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	267, 818
BstAPI	GCANNNNNTGC	1 cut(s)	653
BstC8I	GCNNGC	4 cut(s)	289, 361, 714, 755
BstDEI	CTNAG	5 cut(s)	44, 207, 246, 758, 781
BstF5I	GGATG	3 cut(s)	138, 736, 890
BstKTI	GATC	1 cut(s)	19
BstMAI	GTCTC	1 cut(s)	727
BstMBI	GATC	1 cut(s)	16
BstMWI	GCNNNNNNNGC	2 cut(s)	653, 713
BstNI	CCWGG	1 cut(s)	315
BstNSI	RCATGY	2 cut(s)	99, 291
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	3 cut(s)	381, 570, 714
BstV1I	GCAGC	4 cut(s)	160, 268, 271, 621
BstV2I	GAAGAC	1 cut(s)	536
BstXI	CCANNNNNNTGG	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	262, 341
BtgZI	GCGATG	1 cut(s)	722
BtsCI	GGATG	3 cut(s)	138, 736, 890
BtsIMutI	CAGTG	1 cut(s)	263
Cac8I	GCNNGC	4 cut(s)	289, 361, 714, 755
CseI	GACGC	1 cut(s)	445
Csp6I	GTAC	2 cut(s)	29, 203
CviAII	CATG	4 cut(s)	96, 143, 288, 337
CviQI	GTAC	2 cut(s)	29, 203
DdeI	CTNAG	5 cut(s)	44, 207, 246, 758, 781
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
DraIII	CACNNNGTG	1 cut(s)	837
EaeI	YGGCCR	2 cut(s)	260, 339
Eco130I	CCWWGG	1 cut(s)	395
Eco32I	GATATC	2 cut(s)	565, 846
EcoRII	CCWGG	1 cut(s)	313
EcoRV	GATATC	2 cut(s)	565, 846
EcoT14I	CCWWGG	1 cut(s)	395
EcoT22I	ATGCAT	1 cut(s)	56
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	4 cut(s)	99, 146, 291, 340
FaiI	YATR	9 cut(s)	97, 144, 179, 289, 338, 392, 572, 803, 916
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	4 cut(s)	95, 142, 287, 336
FblI	GTMKAC	1 cut(s)	554
Fnu4HI	GCNGC	4 cut(s)	174, 282, 285, 610
FokI	GGATG	3 cut(s)	125, 743, 877
Fsp4HI	GCNGC	4 cut(s)	174, 282, 285, 610
FspBI	CTAG	4 cut(s)	92, 170, 351, 629
GluI	GCNGC	4 cut(s)	174, 282, 285, 610
HaeIII	GGCC	2 cut(s)	262, 341
HgaI	GACGC	1 cut(s)	445
Hin1II	CATG	4 cut(s)	99, 146, 291, 340
HinfI	GANTC	6 cut(s)	274, 366, 482, 542, 551, 632
HphI	GGTGA	3 cut(s)	463, 572, 746
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	3 cut(s)	16, 408, 471
Hpy188III	TCNNGA	1 cut(s)	620
Hpy8I	GTNNAC	1 cut(s)	555
HpyAV	CCTTC	4 cut(s)	312, 784, 878, 906
HpyCH4III	ACNGT	2 cut(s)	267, 818
HpyCH4IV	ACGT	1 cut(s)	825
HpyF10VI	GCNNNNNNNGC	2 cut(s)	653, 713
HpyF3I	CTNAG	5 cut(s)	44, 207, 246, 758, 781
HpySE526I	ACGT	1 cut(s)	825
Hsp92II	CATG	4 cut(s)	99, 146, 291, 340
Kzo9I	GATC	1 cut(s)	16
LmnI	GCTCC	2 cut(s)	198, 811
LpnPI	CCDG	9 cut(s)	17, 300, 327, 393, 534, 726, 739, 745, 768
Lsp1109I	GCAGC	4 cut(s)	160, 268, 271, 621
LweI	GCATC	6 cut(s)	41, 447, 582, 681, 699, 899
MaeI	CTAG	4 cut(s)	92, 170, 351, 629
MaeII	ACGT	1 cut(s)	825
MaeIII	GTNAC	1 cut(s)	829
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MboII	GAAGA	4 cut(s)	60, 541, 769, 893
MhlI	GDGCHC	1 cut(s)	816
MlsI	TGGCCA	2 cut(s)	262, 341
MluCI	AATT	8 cut(s)	223, 239, 386, 465, 598, 637, 666, 764
MluNI	TGGCCA	2 cut(s)	262, 341
MlyI	GAGTC	1 cut(s)	560
MnlI	CCTC	4 cut(s)	210, 337, 675, 685
Mox20I	TGGCCA	2 cut(s)	262, 341
Mph1103I	ATGCAT	1 cut(s)	56
MscI	TGGCCA	2 cut(s)	262, 341
MseI	TTAA	6 cut(s)	2, 65, 221, 333, 795, 807
MslI	CAYNNNNRTG	2 cut(s)	147, 335
Msp20I	TGGCCA	2 cut(s)	262, 341
MspR9I	CCNGG	1 cut(s)	315
Mva1269I	GAATGC	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	2 cut(s)	653, 713
NdeII	GATC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	99, 146, 291, 340
NmuCI	GTSAC	1 cut(s)	829
NsiI	ATGCAT	1 cut(s)	56
NspI	RCATGY	2 cut(s)	99, 291
PaeI	GCATGC	1 cut(s)	291
PctI	GAATGC	1 cut(s)	130
PfeI	GAWTC	5 cut(s)	274, 366, 482, 542, 632
PkrI	GCNGC	4 cut(s)	175, 283, 286, 611
PleI	GAGTC	1 cut(s)	559
PpsI	GAGTC	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	313
PspGI	CCWGG	1 cut(s)	313
PsrI	GAACNNNNNNTAC	2 cut(s)	291, 323
PstI	CTGCAG	2 cut(s)	385, 718
RsaI	GTAC	2 cut(s)	30, 204
RsaNI	GTAC	2 cut(s)	29, 203
RseI	CAYNNNNRTG	2 cut(s)	147, 335
SaqAI	TTAA	6 cut(s)	2, 65, 221, 333, 795, 807
SatI	GCNGC	4 cut(s)	174, 282, 285, 610
Sau3AI	GATC	1 cut(s)	16
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	816
SfaNI	GCATC	6 cut(s)	41, 447, 582, 681, 699, 899
SfcI	CTRYAG	3 cut(s)	381, 570, 714
SmiMI	CAYNNNNRTG	2 cut(s)	147, 335
SpeI	ACTAGT	1 cut(s)	350
SphI	GCATGC	1 cut(s)	291
Sse9I	AATT	8 cut(s)	223, 239, 386, 465, 598, 637, 666, 764
SspI	AATATT	1 cut(s)	661
SspMI	CTAG	4 cut(s)	92, 170, 351, 629
StyD4I	CCNGG	1 cut(s)	313
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	2 cut(s)	267, 818
TaiI	ACGT	1 cut(s)	828
TaqI	TCGA	1 cut(s)	899
TasI	AATT	8 cut(s)	223, 239, 386, 465, 598, 637, 666, 764
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	5 cut(s)	274, 366, 482, 542, 632
Tru1I	TTAA	6 cut(s)	2, 65, 221, 333, 795, 807
Tru9I	TTAA	6 cut(s)	2, 65, 221, 333, 795, 807
TscAI	CASTG	1 cut(s)	270
TseFI	GTSAC	1 cut(s)	829
TseI	GCWGC	4 cut(s)	173, 281, 284, 609
Tsp45I	GTSAC	1 cut(s)	829
TspGWI	ACGGA	1 cut(s)	548
TspRI	CASTG	1 cut(s)	270
XapI	RAATTY	2 cut(s)	223, 386
XceI	RCATGY	2 cut(s)	99, 291
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XmiI	GTMKAC	1 cut(s)	554
XspI	CTAG	4 cut(s)	92, 170, 351, 629
ZrmI	AGTACT	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.