pycom01g18950

ceramide glucosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0019769
Physical Location & Seq
Forward (+)
17730131 .. 17732668
2538 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18950.4

Sequence Viewer

Length: 537 bp
ATGACGGGAATTGTTGTCAGTTTGGGTTTGGGACAAGTTAGGATTGTATTCGGTGGGATCGACCGCTCAGTGTGGGATTTGGTGAGGGGAAGGCATGCGGCTTACAGAGAGGAGGAGAGAGAGAGGGAGAGGGAGAGAGCGTTCTGCAGCGCGCTAGCAGTTTTCGTTCAGATCCAGGTCACTTCTCTCTGTGGTGGTCCCTTAGAGTTTACGTTTATCGTGCAAAGCACAGAAGACCCTGCTAATCGGGCTGTATCTATGCTACTATCAGAGCTTAAGGGCGAGGTTGATGTTAAGATTGTTGTGGCTGGTATTTCAACAACCTGCAGTCAGAAAATTCACAACCAATTGCAAAAAACCTTGCGGCGAGCAAACAGGCATAACCAATTCTGCCAGAATTGCTGGAGAATTCCACAACCAAGGTCATCGAGTATGGCCGGAAGCATGTTGAGGGTCGAGACAGCGATAGCACCGATGTTGGCAAGAGCGGCGACCCCTTTTCAAGATTGTTGGGTCCAAAAGAAGAAGAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_21

Protein Analysis

179

Amino Acids

19.98

Weight (kDa)

9.54

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019769)

Species Orthologous Gene IDs
malus_domestica MD01G1180200.v1.1
pyrus_communis pycom01g18950 pycom01g18970 pycom01g18980 pycom01g19000 pycom01g19020 pycom09g10610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 332
AccBSI CCGCTC 2 cut(s) 66, 488
AccII CGCG 1 cut(s) 152
AciI CCGC 4 cut(s) 64, 98, 364, 488
AclWI GGATC 2 cut(s) 65, 166
AcoI YGGCCR 1 cut(s) 435
AcsI RAATTY 2 cut(s) 336, 408
AflII CTTAAG 1 cut(s) 275
AgsI TTSAA 2 cut(s) 318, 503
AjnI CCWGG 1 cut(s) 174
AloI GAACNNNNNNTCC 2 cut(s) 125, 157
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 1 cut(s) 452
AlwI GGATC 2 cut(s) 65, 166
AoxI GGCC 1 cut(s) 435
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 2 cut(s) 336, 408
AspLEI GCGC 2 cut(s) 152, 154
AspS9I GGNCC 2 cut(s) 197, 514
AsuHPI GGTGA 1 cut(s) 94
AsuNHI GCTAGC 1 cut(s) 154
AvaII GGWCC 2 cut(s) 197, 514
BbsI GAAGAC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 176
BcoDI GTCTC 1 cut(s) 452
BfaI CTAG 1 cut(s) 155
BfmI CTRYAG 2 cut(s) 145, 325
BfrI CTTAAG 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 332
BisI GCNGC 4 cut(s) 99, 148, 365, 489
BlsI GCNGC 4 cut(s) 100, 149, 366, 490
Bme1390I CCNGG 1 cut(s) 176
Bme18I GGWCC 2 cut(s) 197, 514
BmgT120I GGNCC 2 cut(s) 197, 514
BmiI GGNNCC 2 cut(s) 199, 515
BmrFI CCNGG 1 cut(s) 176
BmtI GCTAGC 1 cut(s) 158
BpiI GAAGAC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 424
BsaJI CCNNGG 1 cut(s) 419
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
BseBI CCWGG 1 cut(s) 176
BseDI CCNNGG 1 cut(s) 419
BseMII CTCAG 1 cut(s) 81
BsePI GCGCGC 1 cut(s) 150
BseRI GAGGAG 2 cut(s) 125, 128
BseXI GCAGC 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 152
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 1 cut(s) 437
BsiEI CGRYCG 1 cut(s) 64
BsiSI CCGG 1 cut(s) 438
BslFI GGGAC 2 cut(s) 45, 183
BsmAI GTCTC 1 cut(s) 452
BsmFI GGGAC 2 cut(s) 45, 183
BsnI GGCC 1 cut(s) 437
Bsp143I GATC 2 cut(s) 57, 171
BspACI CCGC 4 cut(s) 64, 98, 364, 488
BspANI GGCC 1 cut(s) 437
BspCNI CTCAG 1 cut(s) 80
BspFNI CGCG 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 199, 515
BspMAI CTGCAG 2 cut(s) 149, 329
BspMI ACCTGC 1 cut(s) 332
BspOI GCTAGC 1 cut(s) 158
BspPI GGATC 2 cut(s) 65, 166
BspTI CTTAAG 1 cut(s) 275
BsrBI CCGCTC 2 cut(s) 66, 488
BssECI CCNNGG 1 cut(s) 419
BssHII GCGCGC 1 cut(s) 150
BssMI GATC 2 cut(s) 57, 171
BssT1I CCWWGG 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 176
BstAFI CTTAAG 1 cut(s) 275
BstC8I GCNNGC 4 cut(s) 96, 152, 156, 369
BstDEI CTNAG 2 cut(s) 67, 202
BstFNI CGCG 1 cut(s) 152
BstHHI GCGC 2 cut(s) 152, 154
BstKTI GATC 2 cut(s) 60, 174
BstMAI GTCTC 1 cut(s) 452
BstMBI GATC 2 cut(s) 57, 171
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 3 cut(s) 248, 399, 488
BstNI CCWGG 1 cut(s) 176
BstNSI RCATGY 2 cut(s) 98, 448
BstSCI CCNGG 1 cut(s) 174
BstSFI CTRYAG 2 cut(s) 145, 325
BstUI CGCG 1 cut(s) 152
BstV1I GCAGC 1 cut(s) 159
BstV2I GAAGAC 1 cut(s) 240
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BsuRI GGCC 1 cut(s) 437
BtsIMutI CAGTG 1 cut(s) 75
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 4 cut(s) 96, 152, 156, 369
CfoI GCGC 2 cut(s) 152, 154
Cfr13I GGNCC 2 cut(s) 197, 514
CviAII CATG 2 cut(s) 95, 445
CviJI RGCY 5 cut(s) 101, 251, 274, 308, 437
CviKI_1 RGCY 5 cut(s) 101, 251, 274, 308, 437
DdeI CTNAG 2 cut(s) 67, 202
DpnI GATC 2 cut(s) 59, 173
DpnII GATC 2 cut(s) 57, 171
EaeI YGGCCR 1 cut(s) 435
Eco130I CCWWGG 1 cut(s) 419
Eco47I GGWCC 2 cut(s) 197, 514
EcoRI GAATTC 1 cut(s) 408
EcoRII CCWGG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 419
ErhI CCWWGG 1 cut(s) 419
FaeI CATG 2 cut(s) 98, 448
FaiI YATR 5 cut(s) 96, 260, 381, 434, 446
FaqI GGGAC 2 cut(s) 45, 183
FatI CATG 2 cut(s) 94, 444
Fnu4HI GCNGC 4 cut(s) 99, 148, 365, 489
Fsp4HI GCNGC 4 cut(s) 99, 148, 365, 489
FspBI CTAG 1 cut(s) 155
GlaI GCGC 2 cut(s) 151, 153
GluI GCNGC 4 cut(s) 99, 148, 365, 489
GsuI CTGGAG 1 cut(s) 424
HaeIII GGCC 1 cut(s) 437
HapII CCGG 1 cut(s) 438
HhaI GCGC 2 cut(s) 152, 154
Hin1II CATG 2 cut(s) 98, 448
Hin6I GCGC 2 cut(s) 150, 152
HinP1I GCGC 2 cut(s) 150, 152
HpaII CCGG 1 cut(s) 438
HphI GGTGA 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 210
Hpy188I TCNGA 3 cut(s) 171, 271, 333
Hpy188III TCNNGA 2 cut(s) 457, 503
Hpy8I GTNNAC 1 cut(s) 210
HpyAV CCTTC 2 cut(s) 84, 523
HpyCH4IV ACGT 1 cut(s) 212
HpyCH4V TGCA 4 cut(s) 147, 223, 327, 352
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 399, 488
HpyF3I CTNAG 2 cut(s) 67, 202
HpySE526I ACGT 1 cut(s) 212
Hsp92II CATG 2 cut(s) 98, 448
HspAI GCGC 2 cut(s) 150, 152
Kzo9I GATC 2 cut(s) 57, 171
LpnPI CCDG 9 cut(s) 161, 188, 252, 294, 337, 361, 388, 407, 451
Lsp1109I GCAGC 1 cut(s) 159
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 59, 173
MbiI CCGCTC 2 cut(s) 66, 488
MboI GATC 2 cut(s) 57, 171
MboII GAAGA 2 cut(s) 245, 535
MfeI CAATTG 1 cut(s) 347
MflI RGATCY 1 cut(s) 171
MluCI AATT 6 cut(s) 9, 336, 347, 386, 397, 408
MnlI CCTC 7 cut(s) 78, 103, 106, 117, 123, 277, 444
MseI TTAA 2 cut(s) 276, 294
MspCI CTTAAG 1 cut(s) 275
MspI CCGG 1 cut(s) 438
MspR9I CCNGG 1 cut(s) 176
MunI CAATTG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 176
MvnI CGCG 1 cut(s) 152
MwoI GCNNNNNNNGC 3 cut(s) 248, 399, 488
NdeII GATC 2 cut(s) 57, 171
NheI GCTAGC 1 cut(s) 154
NlaIII CATG 2 cut(s) 98, 448
NlaIV GGNNCC 2 cut(s) 199, 515
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 2 cut(s) 98, 448
PaeI GCATGC 1 cut(s) 98
PauI GCGCGC 1 cut(s) 150
PcsI WCGNNNNNNNCGW 1 cut(s) 57
PkrI GCNGC 4 cut(s) 100, 149, 366, 490
Psp6I CCWGG 1 cut(s) 174
PspGI CCWGG 1 cut(s) 174
PspN4I GGNNCC 2 cut(s) 199, 515
PspPI GGNCC 2 cut(s) 197, 514
PstI CTGCAG 2 cut(s) 149, 329
PsuI RGATCY 1 cut(s) 171
PteI GCGCGC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 276, 294
SatI GCNGC 4 cut(s) 99, 148, 365, 489
Sau3AI GATC 2 cut(s) 57, 171
Sau96I GGNCC 2 cut(s) 197, 514
ScrFI CCNGG 1 cut(s) 176
SetI ASST 7 cut(s) 180, 215, 276, 288, 326, 362, 425
SfcI CTRYAG 2 cut(s) 145, 325
SinI GGWCC 2 cut(s) 197, 514
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
SphI GCATGC 1 cut(s) 98
Sse9I AATT 6 cut(s) 9, 336, 347, 386, 397, 408
SsiI CCGC 4 cut(s) 64, 98, 364, 488
SspMI CTAG 1 cut(s) 155
StyD4I CCNGG 1 cut(s) 174
StyI CCWWGG 1 cut(s) 419
TaiI ACGT 1 cut(s) 215
TaqI TCGA 3 cut(s) 60, 428, 456
TasI AATT 6 cut(s) 9, 336, 347, 386, 397, 408
TauI GCSGC 3 cut(s) 101, 367, 491
Tru1I TTAA 2 cut(s) 276, 294
Tru9I TTAA 2 cut(s) 276, 294
TscAI CASTG 1 cut(s) 75
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 178
TspRI CASTG 1 cut(s) 75
Vha464I CTTAAG 1 cut(s) 275
VpaK11BI GGWCC 2 cut(s) 197, 514
XapI RAATTY 2 cut(s) 336, 408
XceI RCATGY 2 cut(s) 98, 448
XspI CTAG 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.