pycom01g18970

ceramide glucosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0019769
Physical Location & Seq
Forward (+)
17750200 .. 17751891
1692 bp
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UTR
Exon/CDS
Intron
pycom01g18970.4

Sequence Viewer

Length: 345 bp
ATGCTACTATCAGAGCTTAAGGACGAGGTTGATGTTAAGATTGTTGTGGCTGGTATTTCAACAACCTGCAGTCAGAAAATTCACAACCAATTGCAAAAAACCTTGCGGCGAGCAAACTGGGACAACCAATTCTACCAGAATTGCTGGAGAATTCCACAACCAAGGTCATCGAGTACGGCCAGAAGCATGTTGAGGGTCGAGACGGCGATAGCACCGATGTTGGCAAGAGCAGCGACCCCTTTTCAAGGTCTGCCAATATATGCATTCCTATCTCGAAGTCACAATTTGGATAACTCAAGGACTCTTCACCAGATAGAGAACCAACACATTCTTTTCTCTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_21

Protein Analysis

115

Amino Acids

13.05

Weight (kDa)

9.77

Isoelectric Point (pI)

63.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019769)

Species Orthologous Gene IDs
malus_domestica MD01G1180200.v1.1
pyrus_communis pycom01g18950 pycom01g18970 pycom01g18980 pycom01g19000 pycom01g19020 pycom09g10610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 74
AciI CCGC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 177
AcsI RAATTY 2 cut(s) 78, 150
AfaI GTAC 1 cut(s) 175
AfiI CCNNNNNNNGG 1 cut(s) 245
AflII CTTAAG 1 cut(s) 17
AgsI TTSAA 2 cut(s) 60, 245
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
Alw26I GTCTC 1 cut(s) 194
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 2 cut(s) 78, 150
AsuHPI GGTGA 1 cut(s) 299
BbvI GCAGC 1 cut(s) 242
BceAI ACGGC 2 cut(s) 192, 219
BcoDI GTCTC 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 67
BfrI CTTAAG 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 2 cut(s) 107, 231
BlsI GCNGC 2 cut(s) 108, 232
BmrI ACTGGG 1 cut(s) 127
BmuI ACTGGG 1 cut(s) 127
BpmI CTGGAG 1 cut(s) 166
BpuEI CTTGAG 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 245
Bse1I ACTGG 1 cut(s) 122
BseDI CCNNGG 1 cut(s) 161
BseLI CCNNNNNNNGG 1 cut(s) 245
BseNI ACTGG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 242
BshFI GGCC 1 cut(s) 179
BslFI GGGAC 1 cut(s) 134
BslI CCNNNNNNNGG 1 cut(s) 245
BsmAI GTCTC 1 cut(s) 194
BsmBI CGTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 134
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 1 cut(s) 179
BspACI CCGC 1 cut(s) 106
BspANI GGCC 1 cut(s) 179
BspMAI CTGCAG 1 cut(s) 71
BspMI ACCTGC 1 cut(s) 74
BspTI CTTAAG 1 cut(s) 17
BsrI ACTGG 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 161
BssT1I CCWWGG 1 cut(s) 161
Bst6I CTCTTC 1 cut(s) 309
BstAFI CTTAAG 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 342
BstENI CCTNNNNNAGG 1 cut(s) 243
BstMAI GTCTC 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 190
BstSFI CTRYAG 1 cut(s) 67
BstV1I GCAGC 1 cut(s) 242
BsuRI GGCC 1 cut(s) 179
BveI ACCTGC 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 174
CviAII CATG 1 cut(s) 187
CviJI RGCY 3 cut(s) 16, 50, 179
CviKI_1 RGCY 3 cut(s) 16, 50, 179
CviQI GTAC 1 cut(s) 174
DdeI CTNAG 1 cut(s) 342
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 161
EcoNI CCTNNNNNAGG 1 cut(s) 243
EcoRI GAATTC 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 161
EcoT22I ATGCAT 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 161
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 1 cut(s) 190
FaiI YATR 3 cut(s) 188, 259, 261
FaqI GGGAC 1 cut(s) 134
FatI CATG 1 cut(s) 186
Fnu4HI GCNGC 2 cut(s) 107, 231
Fsp4HI GCNGC 2 cut(s) 107, 231
GluI GCNGC 2 cut(s) 107, 231
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 1 cut(s) 179
Hin1II CATG 1 cut(s) 190
HinfI GANTC 1 cut(s) 301
HphI GGTGA 1 cut(s) 299
Hpy188I TCNGA 2 cut(s) 13, 75
Hpy188III TCNNGA 2 cut(s) 199, 273
HpyCH4V TGCA 3 cut(s) 69, 94, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 342
Hsp92II CATG 1 cut(s) 190
LpnPI CCDG 7 cut(s) 36, 79, 103, 130, 149, 193, 323
Lsp1109I GCAGC 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 278
MboII GAAGA 2 cut(s) 296, 330
MfeI CAATTG 1 cut(s) 89
MluCI AATT 6 cut(s) 78, 89, 128, 139, 150, 283
MlyI GAGTC 1 cut(s) 295
MnlI CCTC 2 cut(s) 19, 186
Mph1103I ATGCAT 1 cut(s) 265
MseI TTAA 2 cut(s) 18, 36
MspCI CTTAAG 1 cut(s) 17
MunI CAATTG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 230
NlaIII CATG 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 278
NsiI ATGCAT 1 cut(s) 265
NspI RCATGY 1 cut(s) 190
PctI GAATGC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 108, 232
PleI GAGTC 1 cut(s) 295
PpsI GAGTC 1 cut(s) 295
PstI CTGCAG 1 cut(s) 71
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SaqAI TTAA 2 cut(s) 18, 36
SatI GCNGC 2 cut(s) 107, 231
SchI GAGTC 1 cut(s) 295
SetI ASST 6 cut(s) 18, 30, 68, 104, 167, 250
SfcI CTRYAG 1 cut(s) 67
SmlI CTYRAG 2 cut(s) 17, 295
SmoI CTYRAG 2 cut(s) 17, 295
Sse9I AATT 6 cut(s) 78, 89, 128, 139, 150, 283
SsiI CCGC 1 cut(s) 106
StyI CCWWGG 1 cut(s) 161
TaqI TCGA 3 cut(s) 170, 198, 274
TasI AATT 6 cut(s) 78, 89, 128, 139, 150, 283
TauI GCSGC 1 cut(s) 109
Tru1I TTAA 2 cut(s) 18, 36
Tru9I TTAA 2 cut(s) 18, 36
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 1 cut(s) 278
Vha464I CTTAAG 1 cut(s) 17
XagI CCTNNNNNAGG 1 cut(s) 243
XapI RAATTY 2 cut(s) 78, 150
XceI RCATGY 1 cut(s) 190
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.