pycom01g19020

ceramide glucosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0019769
Physical Location & Seq
Forward (+)
17817324 .. 17818828
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g19020.3

Sequence Viewer

Length: 279 bp
ATGCTACTATCATGTTCCTTGCAGGACGAGGTTGATGTTAAGATTGTTGTGGCTGGTATTTCAACAACCTGCAGTCAGAAAATTCACAACCAATTGCAAAAAACCTTGCGGCGAGCAAACAGGCATAACCAATTCTGCCAGAATTGCTGGAGAATTCCACAACCAAGGTCATCGAGTACGGCCGGAAGCATGTTGAGGGTCGAGACGGCGATAGCACCGATGTTGGCAAGAGCGGCGATCCCTTTTCAAGGTACGTTTTGTCAGATTGAAAAGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_transf_21

Protein Analysis

93

Amino Acids

10.3

Weight (kDa)

9.3

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019769)

Species Orthologous Gene IDs
malus_domestica MD01G1180200.v1.1
pyrus_communis pycom01g18950 pycom01g18970 pycom01g18980 pycom01g19000 pycom01g19020 pycom09g10610

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 77
AccBSI CCGCTC 1 cut(s) 233
AciI CCGC 2 cut(s) 109, 233
AclWI GGATC 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 180
AcsI RAATTY 2 cut(s) 81, 153
AfaI GTAC 2 cut(s) 178, 253
AfiI CCNNNNNNNGG 1 cut(s) 248
AgsI TTSAA 3 cut(s) 63, 248, 269
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 232
AoxI GGCC 1 cut(s) 180
ApoI RAATTY 2 cut(s) 81, 153
BceAI ACGGC 2 cut(s) 195, 222
BcoDI GTCTC 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 70
BfuAI ACCTGC 1 cut(s) 77
BisI GCNGC 2 cut(s) 110, 234
BlsI GCNGC 2 cut(s) 111, 235
BpmI CTGGAG 1 cut(s) 169
BsaJI CCNNGG 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 164
BseLI CCNNNNNNNGG 1 cut(s) 248
BseX3I CGGCCG 1 cut(s) 180
Bsh1285I CGRYCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 182
BsiEI CGRYCG 1 cut(s) 183
BsiSI CCGG 1 cut(s) 183
BslI CCNNNNNNNGG 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 182
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 2 cut(s) 109, 233
BspANI GGCC 1 cut(s) 182
BspMAI CTGCAG 1 cut(s) 74
BspMI ACCTGC 1 cut(s) 77
BspPI GGATC 1 cut(s) 232
BsrBI CCGCTC 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 164
BssMI GATC 1 cut(s) 237
BssT1I CCWWGG 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 114
BstENI CCTNNNNNAGG 1 cut(s) 246
BstKTI GATC 1 cut(s) 240
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 237
BstMCI CGRYCG 1 cut(s) 183
BstMWI GCNNNNNNNGC 2 cut(s) 144, 233
BstNSI RCATGY 1 cut(s) 193
BstSFI CTRYAG 1 cut(s) 70
BstZI CGGCCG 1 cut(s) 180
BsuRI GGCC 1 cut(s) 182
BveI ACCTGC 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 114
Csp6I GTAC 2 cut(s) 177, 252
CviAII CATG 2 cut(s) 12, 190
CviJI RGCY 2 cut(s) 53, 182
CviKI_1 RGCY 2 cut(s) 53, 182
CviQI GTAC 2 cut(s) 177, 252
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 180
EagI CGGCCG 1 cut(s) 180
EclXI CGGCCG 1 cut(s) 180
Eco130I CCWWGG 1 cut(s) 164
Eco52I CGGCCG 1 cut(s) 180
EcoNI CCTNNNNNAGG 1 cut(s) 246
EcoRI GAATTC 1 cut(s) 153
EcoT14I CCWWGG 1 cut(s) 164
ErhI CCWWGG 1 cut(s) 164
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 2 cut(s) 15, 193
FaiI YATR 3 cut(s) 13, 126, 191
FatI CATG 2 cut(s) 11, 189
Fnu4HI GCNGC 2 cut(s) 110, 234
Fsp4HI GCNGC 2 cut(s) 110, 234
GluI GCNGC 2 cut(s) 110, 234
GsuI CTGGAG 1 cut(s) 169
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 183
Hin1II CATG 2 cut(s) 15, 193
HpaII CCGG 1 cut(s) 183
Hpy188I TCNGA 2 cut(s) 78, 264
Hpy188III TCNNGA 1 cut(s) 202
HpyCH4IV ACGT 1 cut(s) 254
HpyCH4V TGCA 3 cut(s) 22, 72, 97
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 233
HpySE526I ACGT 1 cut(s) 254
Hsp92II CATG 2 cut(s) 15, 193
Kzo9I GATC 1 cut(s) 237
LpnPI CCDG 7 cut(s) 8, 39, 82, 106, 133, 152, 196
MaeII ACGT 1 cut(s) 254
MalI GATC 1 cut(s) 239
MbiI CCGCTC 1 cut(s) 233
MboI GATC 1 cut(s) 237
MfeI CAATTG 1 cut(s) 92
MluCI AATT 5 cut(s) 81, 92, 131, 142, 153
MnlI CCTC 2 cut(s) 22, 189
MseI TTAA 1 cut(s) 39
MspI CCGG 1 cut(s) 183
MunI CAATTG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 144, 233
NdeII GATC 1 cut(s) 237
NlaIII CATG 2 cut(s) 15, 193
NspI RCATGY 1 cut(s) 193
PkrI GCNGC 2 cut(s) 111, 235
PstI CTGCAG 1 cut(s) 74
RsaI GTAC 2 cut(s) 178, 253
RsaNI GTAC 2 cut(s) 177, 252
SaqAI TTAA 1 cut(s) 39
SatI GCNGC 2 cut(s) 110, 234
Sau3AI GATC 1 cut(s) 237
SetI ASST 6 cut(s) 33, 71, 107, 170, 253, 257
SfcI CTRYAG 1 cut(s) 70
Sse9I AATT 5 cut(s) 81, 92, 131, 142, 153
SsiI CCGC 2 cut(s) 109, 233
StyI CCWWGG 1 cut(s) 164
TaiI ACGT 1 cut(s) 257
TaqI TCGA 2 cut(s) 173, 201
TasI AATT 5 cut(s) 81, 92, 131, 142, 153
TauI GCSGC 2 cut(s) 112, 236
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 246
XapI RAATTY 2 cut(s) 81, 153
XceI RCATGY 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.