Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0013305

Physical Location & Seq

Genomic Coordinates Reverse (-)

20061356 .. 20063467

Gene Structure 2112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGAGCGATTAAGGGTTCCGAGGCGGGTCCAAGTGGCCGAATTCAAACCCGAGATTCCCAAGTACGATGTGACGGGCGGAGAAGAGGACCACTCGGAAGCCCTGGACAACGACGATGGAGATGGCAGTGGCGGTATGCGGGCAAGGCCGTCCGACGGCAACGTGACTGAAGATCAGGAGCCGTTCATGGGCGTGAAGGTCCGAAGAAAAGCTTCGTTTCGCAGAGAATACAGAGGCGACTACATCGACGTCCGTTCAAATCCGTACCTGATGAAAATCTTGCAGAAACAAGGTGATAAGGAGGTTCTGTTTGCCGATAAAGTGTTGAAATTTACTGCTTCCGGGAAGATGAAGCGGCGCATTTTGATGATCGCTGACTTCGCCATTTACATTGTTGACCCGGATGCCGATGCGCTTAAGCGGAGGATAGCTCTTGCAGCTGTGGAGAAGATTTGCTTGAGCGAATTGAGCGATAATTTCTTTGCAATTATCGTTCCTACCGAGTATGATGTGCTGATGGCCAGTACTCGCAAGACGGAAATAGTTACTGTCTTGGTTGAAGCTACTAAGAGTGCTTCTGATTACGAACTTGATGTTTGCTTCGCTAACAGTTTTGAGTATAATGCAGCGGCAGAAATCGTGAAGGAGGTTCAGTTTGAGGAAGTTGAAGGTCTGAACATTGCCATGTATAACAATGATGCGGTCTCTCGTCCAGATTTCGCTTCAGCTATGAGGATCGGTAAGTTTGAAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005543 GO:0005547 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0005938 GO:0006810 GO:0006897 GO:0006909 GO:0006911 GO:0006935 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008150 GO:0008154 GO:0008289 GO:0009605 GO:0009987 GO:0010324 GO:0015629 GO:0015630 GO:0016020 GO:0016043 GO:0016192 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0030027 GO:0030029 GO:0030036 GO:0030041 GO:0030054 GO:0030175 GO:0030898 GO:0031143 GO:0031252 GO:0032991 GO:0034622 GO:0035091 GO:0040011 GO:0042221 GO:0042330 GO:0042623 GO:0042995 GO:0043167 GO:0043168 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043327 GO:0043933 GO:0044085 GO:0044291 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044463 GO:0044464 GO:0044877 GO:0050896 GO:0051015 GO:0051179 GO:0051233 GO:0051234 GO:0051258 GO:0061024 GO:0061851 GO:0065003 GO:0071840 GO:0071944 GO:0097435 GO:0098657 GO:0098858 GO:0099024 GO:0099568 GO:0120025 GO:0120038 GO:1901981

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myosin_TH1

Protein Analysis

252

Amino Acids

28.33

Weight (kDa)

4.95

Isoelectric Point (pI)

41.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myosin_TH1	PF06017	68 - 231	6.8e-35	Unconventional myosin tail, actin- and lipid-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53310 AT5G53310
fragaria_vesca	FvH4_7g30910 FvH4_7g30910
malus_domestica	MD01G1214200.v1.1 MD07G1283800.v1.1
prunus_persica	Prupe.2G306200_v2.0.a1
pyrus_communis	pycom01g22490
rosa_chinensis	RchiOBHm_Chr1g0379991
rosa_laevigata	RLG00000026342
rosa_multiflora	Rmu_sc0004184.1_g000014
rosa_rugosa	Rorug01G0416200.1 Rorug01G0416300.1
rosa_samantha	Rh1AG440900 Rh1BG396600 Rh1CG409800 Rh1DG427400
rosa_wichuraiana	Rw1G038340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	252
AciI	CCGC	8 cut(s)	25, 78, 132, 139, 355, 421, 629, 701
AclWI	GGATC	1 cut(s)	743
AcoI	YGGCCR	2 cut(s)	36, 519
AcsI	RAATTY	2 cut(s)	41, 329
AcuI	CTGAAG	2 cut(s)	189, 708
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	3 cut(s)	65, 266, 526
AfiI	CCNNNNNNNGG	2 cut(s)	155, 188
AflII	CTTAAG	1 cut(s)	416
AgsI	TTSAA	6 cut(s)	46, 258, 328, 560, 668, 749
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	5 cut(s)	212, 431, 440, 563, 728
AluI	AGCT	5 cut(s)	212, 431, 440, 563, 728
Alw26I	GTCTC	1 cut(s)	709
AlwI	GGATC	1 cut(s)	743
Ama87I	CYCGRG	1 cut(s)	50
AoxI	GGCC	3 cut(s)	36, 146, 519
ApeKI	GCWGC	2 cut(s)	437, 626
ApoI	RAATTY	2 cut(s)	41, 329
Asp700I	GAANNNNTTC	1 cut(s)	211
AspLEI	GCGC	2 cut(s)	360, 415
AspS9I	GGNCC	3 cut(s)	28, 88, 199
AsuC2I	CCSGG	2 cut(s)	343, 401
AsuHPI	GGTGA	1 cut(s)	305
AvaI	CYCGRG	1 cut(s)	50
AvaII	GGWCC	3 cut(s)	28, 88, 199
BalI	TGGCCA	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	449, 638
BccI	CCATC	3 cut(s)	110, 116, 511
BceAI	ACGGC	3 cut(s)	133, 166, 172
BciT130I	CCWGG	1 cut(s)	104
BcnI	CCSGG	2 cut(s)	343, 401
BcoDI	GTCTC	1 cut(s)	709
BfrI	CTTAAG	1 cut(s)	416
BisI	GCNGC	4 cut(s)	356, 438, 627, 630
BlsI	GCNGC	4 cut(s)	357, 439, 628, 631
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	3 cut(s)	104, 343, 401
Bme18I	GGWCC	3 cut(s)	28, 88, 199
BmeT110I	CYCGRG	1 cut(s)	50
BmgT120I	GGNCC	3 cut(s)	28, 88, 199
BmiI	GGNNCC	3 cut(s)	18, 29, 180
BmrFI	CCNGG	3 cut(s)	104, 343, 401
BmsI	GCATC	3 cut(s)	394, 400, 688
BplI	GAGNNNNNCTC	4 cut(s)	77, 109, 415, 447
BpuEI	CTTGAG	1 cut(s)	478
BpuMI	CCSGG	2 cut(s)	343, 401
BsaBI	GATNNNNATC	1 cut(s)	275
BsaHI	GRCGYC	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	709
BsaJI	CCNNGG	2 cut(s)	20, 102
BsaXI	ACNNNNNCTCC	4 cut(s)	293, 323, 638, 668
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 188
Bse1I	ACTGG	1 cut(s)	522
Bse3DI	GCAATG	1 cut(s)	678
Bse8I	GATNNNNATC	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	20, 102
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	155, 188
BseMI	GCAATG	1 cut(s)	678
BseNI	ACTGG	1 cut(s)	522
BseXI	GCAGC	2 cut(s)	449, 638
BshFI	GGCC	3 cut(s)	38, 148, 521
BsiHKCI	CYCGRG	1 cut(s)	50
BsiSI	CCGG	2 cut(s)	342, 401
BslI	CCNNNNNNNGG	2 cut(s)	155, 188
BsmAI	GTCTC	1 cut(s)	709
BsnI	GGCC	3 cut(s)	38, 148, 521
Bso31I	GGTCTC	1 cut(s)	709
BsoBI	CYCGRG	1 cut(s)	50
Bsp143I	GATC	3 cut(s)	172, 369, 735
BspACI	CCGC	8 cut(s)	25, 78, 132, 139, 355, 421, 629, 701
BspANI	GGCC	3 cut(s)	38, 148, 521
BspLI	GGNNCC	3 cut(s)	18, 29, 180
BspPI	GGATC	1 cut(s)	743
BspTI	CTTAAG	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	709
BsrDI	GCAATG	1 cut(s)	678
BsrI	ACTGG	1 cut(s)	522
BssECI	CCNNGG	2 cut(s)	20, 102
BssMI	GATC	3 cut(s)	172, 369, 735
BssNI	GRCGYC	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	2 cut(s)	550, 611
Bst6I	CTCTTC	1 cut(s)	78
BstACI	GRCGYC	1 cut(s)	249
BstAFI	CTTAAG	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	1 cut(s)	567
BstF5I	GGATG	1 cut(s)	409
BstHHI	GCGC	2 cut(s)	360, 415
BstKTI	GATC	3 cut(s)	175, 372, 738
BstMAI	GTCTC	1 cut(s)	709
BstMBI	GATC	3 cut(s)	172, 369, 735
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 380, 437, 468
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	3 cut(s)	102, 341, 399
BstV1I	GCAGC	2 cut(s)	449, 638
BsuRI	GGCC	3 cut(s)	38, 148, 521
BtsCI	GGATG	1 cut(s)	409
BtsI	GCAGTG	1 cut(s)	133
BtsIMutI	CAGTG	1 cut(s)	133
Cac8I	GCNNGC	1 cut(s)	141
CfoI	GCGC	2 cut(s)	360, 415
Cfr13I	GGNCC	3 cut(s)	28, 88, 199
Csp6I	GTAC	3 cut(s)	64, 265, 525
CviAII	CATG	2 cut(s)	187, 685
CviQI	GTAC	3 cut(s)	64, 265, 525
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	3 cut(s)	174, 371, 737
DpnII	GATC	3 cut(s)	172, 369, 735
EaeI	YGGCCR	2 cut(s)	36, 519
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
EciI	GGCGGA	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	709
Eco47I	GGWCC	3 cut(s)	28, 88, 199
Eco57I	CTGAAG	2 cut(s)	189, 708
Eco88I	CYCGRG	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	102
FaeI	CATG	2 cut(s)	190, 688
FaiI	YATR	7 cut(s)	137, 188, 507, 621, 686, 690, 731
FalI	AAGNNNNNCTT	4 cut(s)	196, 228, 440, 472
FatI	CATG	2 cut(s)	186, 684
FauI	CCCGC	2 cut(s)	18, 132
Fnu4HI	GCNGC	4 cut(s)	356, 438, 627, 630
FokI	GGATG	1 cut(s)	416
Fsp4HI	GCNGC	4 cut(s)	356, 438, 627, 630
GlaI	GCGC	2 cut(s)	359, 414
GluI	GCNGC	4 cut(s)	356, 438, 627, 630
HaeIII	GGCC	3 cut(s)	38, 148, 521
HapII	CCGG	2 cut(s)	342, 401
HhaI	GCGC	2 cut(s)	360, 415
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	190, 688
Hin6I	GCGC	2 cut(s)	358, 413
HinP1I	GCGC	2 cut(s)	358, 413
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	210
HinfI	GANTC	1 cut(s)	55
HpaII	CCGG	2 cut(s)	342, 401
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	7 cut(s)	21, 97, 154, 203, 580, 675, 755
Hpy188III	TCNNGA	3 cut(s)	176, 640, 713
Hpy8I	GTNNAC	1 cut(s)	397
Hpy99I	CGWCG	3 cut(s)	116, 158, 251
HpyAV	CCTTC	3 cut(s)	190, 637, 662
HpyCH4III	ACNGT	2 cut(s)	550, 611
HpyCH4IV	ACGT	2 cut(s)	162, 249
HpyCH4V	TGCA	4 cut(s)	283, 437, 485, 626
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 380, 437, 468
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	2 cut(s)	162, 249
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	190, 688
HspAI	GCGC	2 cut(s)	358, 413
Kzo9I	GATC	3 cut(s)	172, 369, 735
LmnI	GCTCC	2 cut(s)	4, 178
LpnPI	CCDG	8 cut(s)	89, 116, 161, 281, 355, 414, 535, 726
Lsp1109I	GCAGC	2 cut(s)	449, 638
LweI	GCATC	3 cut(s)	394, 400, 688
MaeII	ACGT	2 cut(s)	162, 249
MaeIII	GTNAC	3 cut(s)	70, 163, 544
MalI	GATC	3 cut(s)	174, 371, 737
MboI	GATC	3 cut(s)	172, 369, 735
MboII	GAAGA	5 cut(s)	95, 182, 216, 358, 460
MlsI	TGGCCA	1 cut(s)	521
MluCI	AATT	5 cut(s)	41, 329, 464, 475, 486
MluNI	TGGCCA	1 cut(s)	521
MmeI	TCCRAC	1 cut(s)	177
MnlI	CCTC	8 cut(s)	15, 79, 227, 295, 417, 640, 652, 726
Mox20I	TGGCCA	1 cut(s)	521
MroXI	GAANNNNTTC	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	521
MseI	TTAA	2 cut(s)	11, 417
MslI	CAYNNNNRTG	3 cut(s)	191, 365, 683
Msp20I	TGGCCA	1 cut(s)	521
MspA1I	CMGCKG	2 cut(s)	440, 629
MspCI	CTTAAG	1 cut(s)	416
MspI	CCGG	2 cut(s)	342, 401
MspR9I	CCNGG	3 cut(s)	104, 343, 401
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	4 cut(s)	145, 380, 437, 468
NciI	CCSGG	2 cut(s)	343, 401
NdeII	GATC	3 cut(s)	172, 369, 735
NlaIII	CATG	2 cut(s)	190, 688
NlaIV	GGNNCC	3 cut(s)	18, 29, 180
NmuCI	GTSAC	2 cut(s)	70, 163
PcsI	WCGNNNNNNNCGW	1 cut(s)	498
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	55
PfoI	TCCNGGA	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	357, 439, 628, 631
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	3 cut(s)	18, 29, 180
PspPI	GGNCC	3 cut(s)	28, 88, 199
PvuII	CAGCTG	1 cut(s)	440
RsaI	GTAC	3 cut(s)	65, 266, 526
RsaNI	GTAC	3 cut(s)	64, 265, 525
RseI	CAYNNNNRTG	3 cut(s)	191, 365, 683
SaqAI	TTAA	2 cut(s)	11, 417
SatI	GCNGC	4 cut(s)	356, 438, 627, 630
Sau3AI	GATC	3 cut(s)	172, 369, 735
Sau96I	GGNCC	3 cut(s)	28, 88, 199
ScaI	AGTACT	1 cut(s)	526
ScrFI	CCNGG	3 cut(s)	104, 343, 401
SfaNI	GCATC	3 cut(s)	394, 400, 688
SinI	GGWCC	3 cut(s)	28, 88, 199
SmiMI	CAYNNNNRTG	3 cut(s)	191, 365, 683
SmlI	CTYRAG	2 cut(s)	416, 457
SmoI	CTYRAG	2 cut(s)	416, 457
Sse9I	AATT	5 cut(s)	41, 329, 464, 475, 486
SsiI	CCGC	8 cut(s)	25, 78, 132, 139, 355, 421, 629, 701
StyD4I	CCNGG	3 cut(s)	102, 341, 399
TaaI	ACNGT	2 cut(s)	550, 611
TaiI	ACGT	2 cut(s)	165, 252
TaqI	TCGA	1 cut(s)	246
TasI	AATT	5 cut(s)	41, 329, 464, 475, 486
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	2 cut(s)	358, 632
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	11, 417
Tru9I	TTAA	2 cut(s)	11, 417
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	2 cut(s)	70, 163
TseI	GCWGC	2 cut(s)	437, 626
Tsp45I	GTSAC	2 cut(s)	70, 163
TspDTI	ATGAA	3 cut(s)	175, 287, 365
TspGWI	ACGGA	3 cut(s)	242, 252, 551
TspRI	CASTG	1 cut(s)	133
Vha464I	CTTAAG	1 cut(s)	416
VpaK11BI	GGWCC	3 cut(s)	28, 88, 199
XapI	RAATTY	2 cut(s)	41, 329
XmnI	GAANNNNTTC	1 cut(s)	211
ZraI	GACGTC	1 cut(s)	250
ZrmI	AGTACT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.