pycom02g04390

Belongs to the enoyl-CoA hydratase isomerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0019760
Physical Location & Seq
Reverse (-)
2863349 .. 2864008
660 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g04390.2

Sequence Viewer

Length: 351 bp
ATGATATTTGTGTTGCACGTTTTTCAGGTATTCACTGCTGAGTATTCTCTAATATGCAAAATCTCTGAGTACAAGAAGCCCTATATAAGCTTCATGGATGGCATAACAATGGGCTTTGGTGTTGGCATATCAGGTCACGGTCGCTACCGGATCATTACAGAGGACTGTTCTTGCTATGCCAGAGAATGTAATTTGTTTGTTCCCAGATGCTGGGTTTTCATGTACAGCGGCAAAGAGTCCAGGAGGAGCATCTGTAGGATTTCAAAACCATCGTATGCACTGTATGTGGGTCTTGGGACCCATTTTGTCCCATCTCAAAACTTAGCTACTTGTGCCAAAGAATCAAGGTGA

Protein Analysis

117

Amino Acids

13.26

Weight (kDa)

9.03

Isoelectric Point (pI)

40.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019760)

Species Orthologous Gene IDs
malus_domestica MD02G1051100.v1.1 MD02G1054100.v1.1 MD02G1054200.v1.1 MD02G1055400.v1.1 MD02G1055800.v1.1 MD15G1189700.v1.1
pyrus_communis pycom02g04390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 210
AciI CCGC 1 cut(s) 228
AclWI GGATC 1 cut(s) 158
AfaI GTAC 2 cut(s) 71, 224
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 1 cut(s) 264
AjnI CCWGG 1 cut(s) 239
AluBI AGCT 2 cut(s) 90, 326
AluI AGCT 2 cut(s) 90, 326
AlwI GGATC 1 cut(s) 158
AlwNI CAGNNNCTG 1 cut(s) 210
AspS9I GGNCC 1 cut(s) 297
AvaII GGWCC 1 cut(s) 297
BccI CCATC 3 cut(s) 92, 277, 319
BciT130I CCWGG 1 cut(s) 241
BfmI CTRYAG 1 cut(s) 253
BisI GCNGC 1 cut(s) 229
BlsI GCNGC 1 cut(s) 230
Bme1390I CCNGG 1 cut(s) 241
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 298, 299
BmrFI CCNGG 1 cut(s) 241
BmsI GCATC 2 cut(s) 197, 258
BsaWI WCCGGW 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 210
BseBI CCWGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 103
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 30, 57
BseRI GAGGAG 1 cut(s) 259
BseYI CCCAGC 1 cut(s) 210
Bsh1285I CGRYCG 1 cut(s) 142
BsiEI CGRYCG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 2 cut(s) 293, 310
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 2 cut(s) 293, 310
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 1 cut(s) 150
BspACI CCGC 1 cut(s) 228
BspCNI CTCAG 2 cut(s) 31, 58
BspLI GGNNCC 2 cut(s) 298, 299
BspPI GGATC 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 222
BssMI GATC 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 241
Bst4CI ACNGT 3 cut(s) 140, 167, 282
BstAUI TGTACA 1 cut(s) 222
BstDEI CTNAG 3 cut(s) 39, 66, 322
BstF5I GGATG 1 cut(s) 103
BstKTI GATC 1 cut(s) 153
BstMBI GATC 1 cut(s) 150
BstMCI CGRYCG 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNI CCWGG 1 cut(s) 241
BstSCI CCNGG 1 cut(s) 239
BstSFI CTRYAG 1 cut(s) 253
BtsCI GGATG 1 cut(s) 103
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 278
CaiI CAGNNNCTG 1 cut(s) 210
Cfr13I GGNCC 1 cut(s) 297
Csp6I GTAC 2 cut(s) 70, 223
CviAII CATG 2 cut(s) 94, 220
CviJI RGCY 4 cut(s) 79, 90, 114, 326
CviKI_1 RGCY 4 cut(s) 79, 90, 114, 326
CviQI GTAC 2 cut(s) 70, 223
DdeI CTNAG 3 cut(s) 39, 66, 322
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 297
EcoRII CCWGG 1 cut(s) 239
FaeI CATG 2 cut(s) 97, 223
FaqI GGGAC 2 cut(s) 293, 310
FatI CATG 2 cut(s) 93, 219
Fnu4HI GCNGC 1 cut(s) 229
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 1 cut(s) 229
GluI GCNGC 1 cut(s) 229
GsaI CCCAGC 1 cut(s) 214
HapII CCGG 1 cut(s) 148
Hin1II CATG 2 cut(s) 97, 223
HindIII AAGCTT 1 cut(s) 88
HinfI GANTC 2 cut(s) 236, 341
HpaII CCGG 1 cut(s) 148
Hpy188I TCNGA 1 cut(s) 67
HpyCH4III ACNGT 3 cut(s) 140, 167, 282
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 3 cut(s) 16, 57, 278
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 3 cut(s) 39, 66, 322
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 2 cut(s) 97, 223
KflI GGGWCCC 1 cut(s) 297
Kzo9I GATC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 246
LpnPI CCDG 8 cut(s) 11, 117, 161, 193, 196, 217, 226, 253
LweI GCATC 2 cut(s) 197, 258
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MluCI AATT 1 cut(s) 190
MlyI GAGTC 1 cut(s) 245
MnlI CCTC 2 cut(s) 154, 237
MslI CAYNNNNRTG 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 228
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 1 cut(s) 241
MvaI CCWGG 1 cut(s) 241
MwoI GCNNNNNNNGC 1 cut(s) 332
NdeII GATC 1 cut(s) 150
NlaIII CATG 2 cut(s) 97, 223
NlaIV GGNNCC 2 cut(s) 298, 299
NmuCI GTSAC 1 cut(s) 134
PfeI GAWTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 210
PfoI TCCNGGA 1 cut(s) 239
PkrI GCNGC 1 cut(s) 230
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PpuMI RGGWCCY 1 cut(s) 297
Psp5II RGGWCCY 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 239
PspFI CCCAGC 1 cut(s) 210
PspGI CCWGG 1 cut(s) 239
PspN4I GGNNCC 2 cut(s) 298, 299
PspPI GGNCC 1 cut(s) 297
PspPPI RGGWCCY 1 cut(s) 297
PstNI CAGNNNCTG 1 cut(s) 210
RsaI GTAC 2 cut(s) 71, 224
RsaNI GTAC 2 cut(s) 70, 223
RseI CAYNNNNRTG 1 cut(s) 107
SatI GCNGC 1 cut(s) 229
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 1 cut(s) 297
SchI GAGTC 1 cut(s) 245
ScrFI CCNGG 1 cut(s) 241
SetI ASST 6 cut(s) 21, 30, 92, 136, 328, 350
SfaNI GCATC 2 cut(s) 197, 258
SfcI CTRYAG 1 cut(s) 253
SinI GGWCC 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 1 cut(s) 190
SsiI CCGC 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 239
TaaI ACNGT 3 cut(s) 140, 167, 282
TaiI ACGT 1 cut(s) 21
TasI AATT 1 cut(s) 190
TatI WGTACW 2 cut(s) 69, 222
TauI GCSGC 1 cut(s) 231
TfiI GAWTC 1 cut(s) 341
TscAI CASTG 2 cut(s) 40, 285
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 2 cut(s) 82, 208
TspRI CASTG 2 cut(s) 40, 285
Van91I CCANNNNNTGG 1 cut(s) 210
VpaK11BI GGWCC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.