Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006629

Physical Location & Seq

Genomic Coordinates Reverse (-)

5234337 .. 5236933

Gene Structure 2597 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAAGAAATCGCCATTGCCGTTGCAGAATGCGAGCGGCAGTAGCAAGAATCAGAGTTTGGGGAAGGAAGCTCTGGTGAAGTTGCTGAGGTGGCATTTTGGGCATCCTGAATTCAGAGGGAAGCAATTGGAAGCCATTGAAGCTGTTCTATCAGGGAGAGATTGCTTTTGTCTTATGCCTACTGGTGGCGGGAAATCCATGTGTTATCAGATACCGGCTCTCGCCAAGAAAACCGGAATCGTGCTTGTTGTCTGTCCTTTAATAGCCTTGATGGAAAACCAAGTGATGGCATTGAAGGAGAAAGGAATTTCTGCAGAGTATCTCTCCTCGACTCAGACAACCCAAACCAAAAATAAGATTCATGAAGACCTTGACTCTGGAAAACCATCTCTGAGGCTGCTTTATGTGACCCCCGAATTGATAGCAACATCTGGATTTATGATGAAGCTGACAAAGATTCACACGAGAGGGTTGTTGAATCTCATTGCCATAGATGAGGCACATTGCATCTCTTCATGGGGCCACGATTTCAGGCCTAGCTACCGTAAGCTGTCATCTCTAAGGAGCCACCTCCCAGGTGTACCAATATTGGCTCTAACAGCTACAGCCGTTCCTAAAGTTCAGATGGATGTGATAGAGTCCTTGTGCCTTCATAATCCATTAACCCTAAGATCTTCTTTCAATCGTCCTAATATACATTATGAAGTTCGATACAAAGATCTTTTAGATGATGTCTATGCTGATCTGTCTGGTGTGCTAAAATCTAGCGGAGATGTTTGTGCAATTGTTTACTGCCTTGAACGTACAATGTGTGACGAGTTGTCTGCTCATCTATCACGGAGTGGAATTTCATGTGCTGCTTATCATGCAGGGTTGAATGATAAGTTAAGAAGTTCAGTCCTAGATAATTGGATTTCCTCTAAGATACAAGTTGTCGTGGCAACGGTGGCTTTTGGGTATGATTGGCATAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000733 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0036310 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097617 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

325

Amino Acids

35.78

Weight (kDa)

8.92

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	42 - 206	1.6e-27	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35740 AT4G35740
fragaria_vesca	FvH4_1g08920 FvH4_1g08920
malus_domestica	MD02G1094600.v1.1
prunus_persica	Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1
pyrus_communis	pycom02g07480
rosa_chinensis	RchiOBHm_Chr2g0095381
rosa_laevigata	RLG00000016560
rosa_multiflora	Rmu_co8503843.1_g000001 Rmu_ssc0000183.1_g000039
rosa_roxburghii	Rroxscaffold_2G00146420
rosa_rugosa	Rorug02G0050200 Rorug02G0050200 Rorug02G0050300
rosa_samantha	Rh2AG098400 Rh2AG098500 Rh2BG099600 Rh2BG099700 Rh2CG101600 Rh2CG101700 Rh2DG099200 Rh2DG099300
rosa_wichuraiana	Rw2G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	36
AciI	CCGC	3 cut(s)	36, 189, 768
AcsI	RAATTY	3 cut(s)	110, 306, 846
AdeI	CACNNNGTG	1 cut(s)	842
AfaI	GTAC	2 cut(s)	582, 805
AfiI	CCNNNNNNNGG	2 cut(s)	185, 286
AgsI	TTSAA	6 cut(s)	140, 295, 478, 682, 800, 877
AhdI	GACNNNNNGTC	1 cut(s)	820
AjnI	CCWGG	1 cut(s)	574
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	6 cut(s)	71, 143, 448, 540, 550, 602
AluI	AGCT	6 cut(s)	71, 143, 448, 540, 550, 602
AoxI	GGCC	2 cut(s)	520, 533
ApeKI	GCWGC	2 cut(s)	397, 857
ApoI	RAATTY	3 cut(s)	110, 306, 846
Asp700I	GAANNNNTTC	1 cut(s)	144
AspS9I	GGNCC	1 cut(s)	520
AsuHPI	GGTGA	1 cut(s)	88
BauI	CACGAG	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	372
BbvCI	CCTCAGC	1 cut(s)	86
BbvI	GCAGC	2 cut(s)	384, 844
BccI	CCATC	4 cut(s)	265, 280, 394, 619
BceAI	ACGGC	2 cut(s)	4, 593
BcgI	CGANNNNNNTGC	2 cut(s)	806, 840
BciT130I	CCWGG	1 cut(s)	576
BfaI	CTAG	3 cut(s)	537, 765, 902
BfmI	CTRYAG	2 cut(s)	312, 603
BglII	AGATCT	2 cut(s)	671, 718
BisI	GCNGC	3 cut(s)	37, 398, 858
BlsI	GCNGC	3 cut(s)	38, 399, 859
Bme1390I	CCNGG	1 cut(s)	576
BmeRI	GACNNNNNGTC	1 cut(s)	820
BmgT120I	GGNCC	1 cut(s)	520
BmiI	GGNNCC	2 cut(s)	521, 566
BmrFI	CCNGG	1 cut(s)	576
BmsI	GCATC	2 cut(s)	112, 516
BpiI	GAAGAC	1 cut(s)	372
BplI	GAGNNNNNCTC	2 cut(s)	308, 340
Bpu10I	CCTNAGC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	574
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	185, 286
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	3 cut(s)	14, 483, 502
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	2 cut(s)	103, 634
BseLI	CCNNNNNNNGG	2 cut(s)	185, 286
BseMI	GCAATG	3 cut(s)	14, 483, 502
BseMII	CTCAG	3 cut(s)	77, 347, 383
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	316
BseXI	GCAGC	2 cut(s)	384, 844
BshFI	GGCC	2 cut(s)	522, 535
BsiSI	CCGG	2 cut(s)	215, 234
BslI	CCNNNNNNNGG	2 cut(s)	185, 286
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	522, 535
Bsp143I	GATC	3 cut(s)	671, 718, 742
BspACI	CCGC	3 cut(s)	36, 189, 768
BspANI	GGCC	2 cut(s)	522, 535
BspCNI	CTCAG	3 cut(s)	78, 346, 384
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	2 cut(s)	521, 566
BspMAI	CTGCAG	1 cut(s)	316
BsrBI	CCGCTC	1 cut(s)	36
BsrDI	GCAATG	3 cut(s)	14, 483, 502
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	574
BssMI	GATC	3 cut(s)	671, 718, 742
BssSI	CACGAG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	463
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	2 cut(s)	545, 946
Bst6I	CTCTTC	1 cut(s)	517
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	6 cut(s)	86, 333, 392, 560, 668, 921
BstF5I	GGATG	2 cut(s)	103, 634
BstKTI	GATC	3 cut(s)	674, 721, 745
BstMBI	GATC	3 cut(s)	671, 718, 742
BstMWI	GCNNNNNNNGC	7 cut(s)	42, 91, 100, 140, 599, 866, 947
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	2 cut(s)	312, 603
BstV1I	GCAGC	2 cut(s)	384, 844
BstV2I	GAAGAC	1 cut(s)	372
BstX2I	RGATCY	2 cut(s)	671, 718
BstYI	RGATCY	2 cut(s)	671, 718
BsuRI	GGCC	2 cut(s)	522, 535
BtsCI	GGATG	2 cut(s)	103, 634
Cac8I	GCNNGC	1 cut(s)	34
CciI	TCATGA	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	520
Csp6I	GTAC	2 cut(s)	581, 804
CviAII	CATG	5 cut(s)	199, 362, 516, 852, 866
CviQI	GTAC	2 cut(s)	581, 804
DdeI	CTNAG	6 cut(s)	86, 333, 392, 560, 668, 921
DpnI	GATC	3 cut(s)	673, 720, 744
DpnII	GATC	3 cut(s)	671, 718, 742
DraIII	CACNNNGTG	1 cut(s)	842
DriI	GACNNNNNGTC	1 cut(s)	820
Eam1104I	CTCTTC	1 cut(s)	517
Eam1105I	GACNNNNNGTC	1 cut(s)	820
EarI	CTCTTC	1 cut(s)	517
Eco147I	AGGCCT	1 cut(s)	535
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	574
FaeI	CATG	5 cut(s)	202, 365, 519, 855, 869
FalI	AAGNNNNNCTT	2 cut(s)	661, 693
FatI	CATG	5 cut(s)	198, 361, 515, 851, 865
FauI	CCCGC	1 cut(s)	182
Fnu4HI	GCNGC	3 cut(s)	37, 398, 858
FokI	GGATG	2 cut(s)	90, 641
Fsp4HI	GCNGC	3 cut(s)	37, 398, 858
FspBI	CTAG	3 cut(s)	537, 765, 902
GluI	GCNGC	3 cut(s)	37, 398, 858
HaeIII	GGCC	2 cut(s)	522, 535
HapII	CCGG	2 cut(s)	215, 234
Hin1II	CATG	5 cut(s)	202, 365, 519, 855, 869
HinfI	GANTC	8 cut(s)	49, 237, 331, 358, 374, 457, 478, 638
HpaII	CCGG	2 cut(s)	215, 234
HphI	GGTGA	1 cut(s)	88
Hpy166II	GTNNAC	2 cut(s)	581, 790
Hpy188I	TCNGA	6 cut(s)	54, 116, 210, 336, 393, 624
Hpy188III	TCNNGA	4 cut(s)	107, 362, 378, 432
Hpy8I	GTNNAC	2 cut(s)	581, 790
HpyAV	CCTTC	3 cut(s)	58, 289, 659
HpyCH4III	ACNGT	2 cut(s)	545, 946
HpyCH4IV	ACGT	1 cut(s)	802
HpyCH4V	TGCA	5 cut(s)	25, 314, 507, 782, 869
HpyF10VI	GCNNNNNNNGC	7 cut(s)	42, 91, 100, 140, 599, 866, 947
HpyF3I	CTNAG	6 cut(s)	86, 333, 392, 560, 668, 921
HpySE526I	ACGT	1 cut(s)	802
Hsp92II	CATG	5 cut(s)	202, 365, 519, 855, 869
Kzo9I	GATC	3 cut(s)	671, 718, 742
LmnI	GCTCC	1 cut(s)	564
Lsp1109I	GCAGC	2 cut(s)	384, 844
LweI	GCATC	2 cut(s)	112, 516
MaeI	CTAG	3 cut(s)	537, 765, 902
MaeII	ACGT	1 cut(s)	802
MaeIII	GTNAC	2 cut(s)	406, 812
MalI	GATC	3 cut(s)	673, 720, 744
MbiI	CCGCTC	1 cut(s)	36
MboI	GATC	3 cut(s)	671, 718, 742
MboII	GAAGA	4 cut(s)	16, 377, 504, 666
MfeI	CAATTG	2 cut(s)	125, 783
MflI	RGATCY	2 cut(s)	671, 718
MluCI	AATT	7 cut(s)	110, 125, 306, 416, 783, 846, 907
MlyI	GAGTC	3 cut(s)	325, 368, 647
MnlI	CCTC	8 cut(s)	81, 110, 337, 387, 461, 490, 581, 928
MroXI	GAANNNNTTC	1 cut(s)	144
MseI	TTAA	3 cut(s)	260, 662, 887
MspI	CCGG	2 cut(s)	215, 234
MspR9I	CCNGG	1 cut(s)	576
MunI	CAATTG	2 cut(s)	125, 783
Mva1269I	GAATGC	1 cut(s)	34
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	7 cut(s)	42, 91, 100, 140, 599, 866, 947
NdeII	GATC	3 cut(s)	671, 718, 742
NlaIII	CATG	5 cut(s)	202, 365, 519, 855, 869
NlaIV	GGNNCC	2 cut(s)	521, 566
NmuCI	GTSAC	2 cut(s)	406, 812
PagI	TCATGA	1 cut(s)	361
PceI	AGGCCT	1 cut(s)	535
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	34
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	5 cut(s)	49, 237, 358, 457, 478
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	3 cut(s)	38, 399, 859
PleI	GAGTC	3 cut(s)	325, 368, 646
PpsI	GAGTC	3 cut(s)	325, 368, 646
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	521, 566
PspPI	GGNCC	1 cut(s)	520
PstI	CTGCAG	1 cut(s)	316
PsuI	RGATCY	2 cut(s)	671, 718
RsaI	GTAC	2 cut(s)	582, 805
RsaNI	GTAC	2 cut(s)	581, 804
SaqAI	TTAA	3 cut(s)	260, 662, 887
SatI	GCNGC	3 cut(s)	37, 398, 858
Sau3AI	GATC	3 cut(s)	671, 718, 742
Sau96I	GGNCC	1 cut(s)	520
SchI	GAGTC	3 cut(s)	325, 368, 647
ScrFI	CCNGG	1 cut(s)	576
SfaNI	GCATC	2 cut(s)	112, 516
SfcI	CTRYAG	2 cut(s)	312, 603
Sse9I	AATT	7 cut(s)	110, 125, 306, 416, 783, 846, 907
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	3 cut(s)	36, 189, 768
SspI	AATATT	1 cut(s)	588
SspMI	CTAG	3 cut(s)	537, 765, 902
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	1 cut(s)	574
TaaI	ACNGT	2 cut(s)	545, 946
TaiI	ACGT	1 cut(s)	805
TaqI	TCGA	2 cut(s)	329, 709
TasI	AATT	7 cut(s)	110, 125, 306, 416, 783, 846, 907
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	5 cut(s)	49, 237, 358, 457, 478
Tru1I	TTAA	3 cut(s)	260, 662, 887
Tru9I	TTAA	3 cut(s)	260, 662, 887
TseFI	GTSAC	2 cut(s)	406, 812
TseI	GCWGC	2 cut(s)	397, 857
Tsp45I	GTSAC	2 cut(s)	406, 812
TspDTI	ATGAA	8 cut(s)	17, 350, 378, 458, 504, 641, 717, 840
TspGWI	ACGGA	1 cut(s)	853
Van91I	CCANNNNNTGG	1 cut(s)	286
XapI	RAATTY	3 cut(s)	110, 306, 846
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	3 cut(s)	537, 765, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.