Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0006629

Physical Location & Seq

Genomic Coordinates Forward (+)

84320585 .. 84325877

Gene Structure 5293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00146420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2163 bp

ATGAAGAAATCACCGTTGCCATTACAGAACGCAAGCGGCGGGAGTAAGAATCAGAAGCTCGGAAAGGAAGCGCTGGTGAAGCTACTGAGATGGCATTTCGGTCATCCAGAATTCAGAGGGAAGCAATTGGAGGCCATTGAAGCTGTTCTATCAGGAAGAGATTGTTTCTGCTTGATGCCAACCGGAGGCGGGAAGTCGATGTGTTATCAGATACCGGCGCTGGCCAAGAAGACCGGAATCGTGCTTGTTGTGTGTCCTTTGATAGCTTTGATGGAAAACCAAGTGATGGCTTTGAAGGAGAAAGGAATTGCTGCTGAATATCTATCCTCCACACAGACTACACAAGTAAAAAATAAGATACATGAAGACCTTGATTCTGGAAAACTATCTTTGAGGCTGCTATATGTGACGCCAGAATTGATTGCAACACCTGGATTTATGACAAAACTGACAAAGATTCACTCAAGAGGGTTGTTAAATCTTATTGCCATAGACGAGGCACATTGCATCTCTTCATGGGGCCATGATTTTAGGCCTAGCTATCGAAAGCTGTCGTCTTTGAGGAGCCACCTCCCAGGTGTACCAACATTAGCTTTGACAGCTACAGCCGTTCCTAAAGTTCAGAAGGATGTGATAGAGTCCTTACGCCTCCAAAACCCTTTAGTCCTAAAATCTTCTTTCAATCGTTCTAATATATATTATGAAGTTCGATACAAAGATCTTTTACACAGTGTGTATGCTGATTTATCTGACGTACTAAAATCTAGTGGAGATATTTGTGCAATTGTCTACTGCCTTGAACGAACAATGTGCGATGACTTATCTGTTCATCTATCACAAAACGGGATATCATGTGCTGCAGTAATTGAGCTTTTGGTGTCTGTTCAGGATGATAGAAAAGATGTCAGAATTGTTTGCCATTTTAATATTCCGAAGTCAATGGAAGGCTTCTACCAAGAGTCTGGTAGAGCTGGTCGTGATCAATTACCCTCCAGAAGCCTATTGTATTATGGAATTGAAGATTGCAAGAGAATGAAATTTATTCTAAGTAATGCTGAGAACAAGAAATCAAAGGCCTCAAACTCACAAGAAGAGTTGTCAAACAAATCCCTGACCGACTTTCAACAGATGGTTGAGTATTGTGAGGGCTCTGGATGCCGGAGGAAAAAGATCCTTGAGAATTTTGGTGAAAAGGTACCTGTAACACTGTGTAGCAAAACATGTGATGCCTGCAAACATCCAAACCTCATAGCCAAATACTTGGAGGAGCTCGCAACTGCTTGTATCGTCCGGCAGAAAGCTGGTTCATCTCGAATTTTTGTGGGCAGCTCCTCAAATGAGGTTAATGAAGATCAGTCCTCTGAATTCTGGAACCGTGATGATGAAGCAAGTTGTTCTGAGGAAGACATATCTGATTCTGATGATGATGTTGCGGACCTTGTAGCTGTCAAGAGCCTTACCAGATCAAAGTTGATCGATGAAAAATTGGAAGCCTTGCAGCGTGCAGAAGAAAAATATTACCAGAATAAATCTGATAAGCAGGTTCAATCTGGCATATTGAATACGGATAAACTTAACAAGAATGCTATATCTGATATGCTGAGAGAAGCAAGCAAGCAGAGATTAGAAAATGCTGTAAAGCAGGCTCAGCAACGACTTGGAAACTTAAAGATTGAGGTGGAAAAATCGGCATCTTTCCTTGAAAATGAATGTTACAAAAAATATGGGAAAACTGGGAAATCATTCTATTATTCTCAAGTCGCAAGTACAGTGAGGTGGTTATCAACCGTAAATTCTACCGACTTAACTGATCGTCTCAACACCATAACCAGTTCCCCGTCAGAGAATACTCCGCTCAAAACAGCACCTTCTGCATCACTATCGCCATTGGTGGAGACAGGACCTTTTGCAACGCCATCACCTTTGGTGGACAGAGCAACAGAAATCACCAGAAATGACCTACATGAGAGTGTTAGACTGGAAGCTTCTGTAGCTCTGTCACCAACGCAAAGTGATTCCCCAAGTACAATTTTGCCAGCAATTCCATCCTTCTCAGAGTTTATCAACAGCAAAAAGGTGAAAGACAACAGATCAAGTGCATCGGAAAAGCAATCCCTTAATGGGGTTAAGAAGAATCCAGAGAAGAAAATGAGGTTACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000733 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0036310 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097617 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

720

Amino Acids

80.0

Weight (kDa)

8.63

Isoelectric Point (pI)

50.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	42 - 207	2.8e-26	DEAD/DEAH box helicase
RecQ_Zn_bind	PF16124	340 - 412	3.8e-12	RecQ zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35740 AT4G35740
fragaria_vesca	FvH4_1g08920 FvH4_1g08920
malus_domestica	MD02G1094600.v1.1
prunus_persica	Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1
pyrus_communis	pycom02g07480
rosa_chinensis	RchiOBHm_Chr2g0095381
rosa_laevigata	RLG00000016560
rosa_multiflora	Rmu_co8503843.1_g000001 Rmu_ssc0000183.1_g000039
rosa_roxburghii	Rroxscaffold_2G00146420
rosa_rugosa	Rorug02G0050200 Rorug02G0050200 Rorug02G0050300
rosa_samantha	Rh2AG098400 Rh2AG098500 Rh2BG099600 Rh2BG099700 Rh2CG101600 Rh2CG101700 Rh2DG099200 Rh2DG099300
rosa_wichuraiana	Rw2G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1531
Acc65I	GGTACC	1 cut(s)	1195
AccB1I	GGYRCC	1 cut(s)	1195
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccBSI	CCGCTC	1 cut(s)	1855
AccI	GTMKAC	1 cut(s)	789
AciI	CCGC	5 cut(s)	36, 39, 189, 1433, 1853
AclWI	GGATC	1 cut(s)	1165
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	6 cut(s)	110, 1037, 1180, 1314, 1364, 1792
AcyI	GRCGYC	1 cut(s)	410
AdeI	CACNNNGTG	1 cut(s)	733
AfaI	GTAC	5 cut(s)	582, 756, 1197, 1768, 2026
AfeI	AGCGCT	1 cut(s)	72
AfiI	CCNNNNNNNGG	5 cut(s)	185, 189, 286, 2121, 2122
AflIII	ACRYGT	1 cut(s)	1220
AgsI	TTSAA	9 cut(s)	140, 295, 682, 800, 1019, 1124, 1547, 1561, 1703
AjnI	CCWGG	2 cut(s)	430, 574
Alw21I	GWGCWC	1 cut(s)	1272
Alw26I	GTCTC	2 cut(s)	1820, 1889
AlwI	GGATC	1 cut(s)	1165
Aor51HI	AGCGCT	1 cut(s)	72
AoxI	GGCC	5 cut(s)	132, 222, 520, 533, 1074
ApeKI	GCWGC	5 cut(s)	311, 397, 857, 1326, 1498
ApoI	RAATTY	6 cut(s)	110, 1037, 1180, 1314, 1364, 1792
Asp700I	GAANNNNTTC	2 cut(s)	144, 1742
Asp718I	GGTACC	1 cut(s)	1195
AspLEI	GCGC	2 cut(s)	73, 220
AspS9I	GGNCC	3 cut(s)	520, 1435, 1901
AsuHPI	GGTGA	7 cut(s)	3, 88, 1199, 1911, 1939, 1992, 2089
AvaII	GGWCC	2 cut(s)	1435, 1901
BalI	TGGCCA	1 cut(s)	224
BanI	GGYRCC	1 cut(s)	1195
BanII	GRGCYC	2 cut(s)	1151, 1272
BbsI	GAAGAC	3 cut(s)	236, 372, 1410
Bbv12I	GWGCWC	1 cut(s)	1272
BbvI	GCAGC	5 cut(s)	298, 384, 844, 1338, 1510
BccI	CCATC	6 cut(s)	84, 265, 280, 1123, 1924, 2053
BceAI	ACGGC	1 cut(s)	593
BcgI	CGANNNNNNTGC	4 cut(s)	792, 826, 1863, 1897
BciT130I	CCWGG	2 cut(s)	432, 576
BclI	TGATCA	1 cut(s)	979
BcoDI	GTCTC	2 cut(s)	1820, 1889
BfaI	CTAG	2 cut(s)	537, 765
BfmI	CTRYAG	3 cut(s)	603, 858, 1989
BfoI	RGCGCY	2 cut(s)	74, 221
BfuAI	ACCTGC	1 cut(s)	1531
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	6 cut(s)	37, 312, 398, 858, 1327, 1499
BlpI	GCTNAGC	1 cut(s)	1647
BlsI	GCNGC	6 cut(s)	38, 313, 399, 859, 1328, 1500
Bme1390I	CCNGG	2 cut(s)	432, 576
Bme18I	GGWCC	2 cut(s)	1435, 1901
BmgT120I	GGNCC	3 cut(s)	520, 1435, 1901
BmiI	GGNNCC	4 cut(s)	521, 566, 1197, 1373
BmrFI	CCNGG	2 cut(s)	432, 576
BmrI	ACTGGG	1 cut(s)	1743
BmsI	GCATC	7 cut(s)	165, 516, 1145, 1216, 1700, 1883, 2108
BmuI	ACTGGG	1 cut(s)	1743
BpiI	GAAGAC	3 cut(s)	236, 372, 1410
BpmI	CTGGAG	1 cut(s)	976
Bpu1102I	GCTNAGC	1 cut(s)	1647
BpuEI	CTTGAG	3 cut(s)	448, 1196, 1740
Bsa29I	ATCGAT	1 cut(s)	1476
BsaHI	GRCGYC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	574
BsaWI	WCCGGW	2 cut(s)	182, 233
Bsc4I	CCNNNNNNNGG	5 cut(s)	185, 189, 286, 2121, 2122
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	3 cut(s)	1738, 1830, 1983
Bse3DI	GCAATG	1 cut(s)	502
BseBI	CCWGG	2 cut(s)	432, 576
BseCI	ATCGAT	1 cut(s)	1476
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	6 cut(s)	103, 634, 895, 1160, 1237, 2045
BseLI	CCNNNNNNNGG	5 cut(s)	185, 189, 286, 2121, 2122
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	6 cut(s)	77, 1047, 1389, 1592, 1661, 2067
BseNI	ACTGG	3 cut(s)	1738, 1830, 1983
BseRI	GAGGAG	3 cut(s)	577, 1280, 1321
BseXI	GCAGC	5 cut(s)	298, 384, 844, 1338, 1510
BsgI	GTGCAG	1 cut(s)	1524
BshFI	GGCC	5 cut(s)	134, 224, 522, 535, 1076
BshNI	GGYRCC	1 cut(s)	1195
BshVI	ATCGAT	1 cut(s)	1476
BsiHKAI	GWGCWC	1 cut(s)	1272
BsiSI	CCGG	5 cut(s)	183, 215, 234, 1159, 1291
BslI	CCNNNNNNNGG	5 cut(s)	185, 189, 286, 2121, 2122
BsmAI	GTCTC	2 cut(s)	1820, 1889
BsmBI	CGTCTC	1 cut(s)	1820
BsmI	GAATGC	1 cut(s)	1588
BsnI	GGCC	5 cut(s)	134, 224, 522, 535, 1076
Bsp1286I	GDGCHC	2 cut(s)	1151, 1272
Bsp143I	GATC	8 cut(s)	718, 979, 1170, 1351, 1463, 1473, 1810, 2090
Bsp1720I	GCTNAGC	1 cut(s)	1647
BspACI	CCGC	5 cut(s)	36, 39, 189, 1433, 1853
BspANI	GGCC	5 cut(s)	134, 224, 522, 535, 1076
BspCNI	CTCAG	6 cut(s)	78, 1048, 1390, 1593, 1660, 2066
BspDI	ATCGAT	1 cut(s)	1476
BspLI	GGNNCC	4 cut(s)	521, 566, 1197, 1373
BspMAI	CTGCAG	1 cut(s)	862
BspMI	ACCTGC	1 cut(s)	1531
BspPI	GGATC	1 cut(s)	1165
BspT107I	GGYRCC	1 cut(s)	1195
BsrBI	CCGCTC	1 cut(s)	1855
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	3 cut(s)	1738, 1830, 1983
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	574
BssMI	GATC	8 cut(s)	718, 979, 1170, 1351, 1463, 1473, 1810, 2090
BssNI	GRCGYC	1 cut(s)	410
Bst2UI	CCWGG	2 cut(s)	432, 576
Bst4CI	ACNGT	6 cut(s)	15, 731, 1209, 1376, 1771, 1789
Bst6I	CTCTTC	3 cut(s)	151, 517, 1086
BstACI	GRCGYC	1 cut(s)	410
BstAPI	GCANNNNNTGC	1 cut(s)	1871
BstC8I	GCNNGC	9 cut(s)	34, 222, 1231, 1272, 1503, 1612, 1616, 1644, 2037
BstDEI	CTNAG	7 cut(s)	86, 1046, 1056, 1398, 1601, 1647, 2053
BstF5I	GGATG	6 cut(s)	103, 634, 895, 1160, 1237, 2045
BstH2I	RGCGCY	2 cut(s)	74, 221
BstHHI	GCGC	2 cut(s)	73, 220
BstKTI	GATC	8 cut(s)	721, 982, 1173, 1354, 1466, 1476, 1813, 2093
BstMAI	GTCTC	2 cut(s)	1820, 1889
BstMBI	GATC	8 cut(s)	718, 979, 1170, 1351, 1463, 1473, 1810, 2090
BstMWI	GCNNNNNNNGC	7 cut(s)	79, 140, 599, 1155, 1648, 1871, 1991
BstNI	CCWGG	2 cut(s)	432, 576
BstNSI	RCATGY	1 cut(s)	1224
BstSCI	CCNGG	2 cut(s)	430, 574
BstSFI	CTRYAG	3 cut(s)	603, 858, 1989
BstV1I	GCAGC	5 cut(s)	298, 384, 844, 1338, 1510
BstV2I	GAAGAC	3 cut(s)	236, 372, 1410
BstX2I	RGATCY	2 cut(s)	718, 1170
BstXI	CCANNNNNNTGG	2 cut(s)	962, 1261
BstYI	RGATCY	2 cut(s)	718, 1170
Bsu15I	ATCGAT	1 cut(s)	1476
BsuRI	GGCC	5 cut(s)	134, 224, 522, 535, 1076
BsuTUI	ATCGAT	1 cut(s)	1476
BtgZI	GCGATG	1 cut(s)	828
BtsCI	GGATG	6 cut(s)	103, 634, 895, 1160, 1237, 2045
BtsIMutI	CAGTG	3 cut(s)	736, 1205, 1776
BveI	ACCTGC	1 cut(s)	1531
Cac8I	GCNNGC	9 cut(s)	34, 222, 1231, 1272, 1503, 1612, 1616, 1644, 2037
CfoI	GCGC	2 cut(s)	73, 220
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	3 cut(s)	520, 1435, 1901
ClaI	ATCGAT	1 cut(s)	1476
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	5 cut(s)	581, 755, 1196, 1767, 2025
CviAII	CATG	6 cut(s)	362, 516, 524, 852, 1221, 1964
CviQI	GTAC	5 cut(s)	581, 755, 1196, 1767, 2025
DdeI	CTNAG	7 cut(s)	86, 1046, 1056, 1398, 1601, 1647, 2053
DpnI	GATC	8 cut(s)	720, 981, 1172, 1353, 1465, 1475, 1812, 2092
DpnII	GATC	8 cut(s)	718, 979, 1170, 1351, 1463, 1473, 1810, 2090
DraIII	CACNNNGTG	1 cut(s)	733
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	3 cut(s)	151, 517, 1086
EarI	CTCTTC	3 cut(s)	151, 517, 1086
Ecl136II	GAGCTC	1 cut(s)	1270
Eco147I	AGGCCT	2 cut(s)	535, 1076
Eco24I	GRGCYC	2 cut(s)	1151, 1272
Eco32I	GATATC	1 cut(s)	849
Eco47I	GGWCC	2 cut(s)	1435, 1901
Eco47III	AGCGCT	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	1270
EcoICRI	GAGCTC	1 cut(s)	1270
EcoO109I	RGGNCCY	1 cut(s)	1901
EcoRI	GAATTC	2 cut(s)	110, 1364
EcoRII	CCWGG	2 cut(s)	430, 574
EcoRV	GATATC	1 cut(s)	849
EcoT38I	GRGCYC	2 cut(s)	1151, 1272
Esp3I	CGTCTC	1 cut(s)	1820
FaeI	CATG	6 cut(s)	365, 519, 527, 855, 1224, 1967
FatI	CATG	6 cut(s)	361, 515, 523, 851, 1220, 1963
FauI	CCCGC	2 cut(s)	32, 182
FbaI	TGATCA	1 cut(s)	979
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	6 cut(s)	37, 312, 398, 858, 1327, 1499
FokI	GGATG	6 cut(s)	90, 641, 902, 1167, 1224, 2032
FriOI	GRGCYC	2 cut(s)	1151, 1272
Fsp4HI	GCNGC	6 cut(s)	37, 312, 398, 858, 1327, 1499
FspBI	CTAG	2 cut(s)	537, 765
GlaI	GCGC	2 cut(s)	72, 219
GluI	GCNGC	6 cut(s)	37, 312, 398, 858, 1327, 1499
GsuI	CTGGAG	1 cut(s)	976
HaeII	RGCGCY	2 cut(s)	74, 221
HaeIII	GGCC	5 cut(s)	134, 224, 522, 535, 1076
HapII	CCGG	5 cut(s)	183, 215, 234, 1159, 1291
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	2 cut(s)	73, 220
Hin1I	GRCGYC	1 cut(s)	410
Hin1II	CATG	6 cut(s)	365, 519, 527, 855, 1224, 1967
Hin6I	GCGC	2 cut(s)	71, 218
HinP1I	GCGC	2 cut(s)	71, 218
HindIII	AAGCTT	1 cut(s)	1983
HinfI	GANTC	9 cut(s)	49, 237, 374, 457, 638, 959, 1415, 2015, 2134
HpaII	CCGG	5 cut(s)	183, 215, 234, 1159, 1291
HphI	GGTGA	7 cut(s)	3, 88, 1199, 1911, 1939, 1992, 2089
Hpy166II	GTNNAC	3 cut(s)	581, 790, 1930
Hpy8I	GTNNAC	3 cut(s)	581, 790, 1930
HpyAV	CCTTC	5 cut(s)	289, 619, 938, 1878, 2059
HpyCH4III	ACNGT	6 cut(s)	15, 731, 1209, 1376, 1771, 1789
HpyCH4IV	ACGT	1 cut(s)	753
HpyF10VI	GCNNNNNNNGC	7 cut(s)	79, 140, 599, 1155, 1648, 1871, 1991
HpyF3I	CTNAG	7 cut(s)	86, 1046, 1056, 1398, 1601, 1647, 2053
HpySE526I	ACGT	1 cut(s)	753
Hsp92I	GRCGYC	1 cut(s)	410
Hsp92II	CATG	6 cut(s)	365, 519, 527, 855, 1224, 1967
HspAI	GCGC	2 cut(s)	71, 218
KpnI	GGTACC	1 cut(s)	1199
Ksp22I	TGATCA	1 cut(s)	979
Kzo9I	GATC	8 cut(s)	718, 979, 1170, 1351, 1463, 1473, 1810, 2090
LmnI	GCTCC	3 cut(s)	564, 1267, 1334
Lsp1109I	GCAGC	5 cut(s)	298, 384, 844, 1338, 1510
LweI	GCATC	7 cut(s)	165, 516, 1145, 1216, 1700, 1883, 2108
MaeI	CTAG	2 cut(s)	537, 765
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	5 cut(s)	406, 1201, 1712, 1998, 2154
MalI	GATC	8 cut(s)	720, 981, 1172, 1353, 1465, 1475, 1812, 2092
MbiI	CCGCTC	1 cut(s)	1855
MboI	GATC	8 cut(s)	718, 979, 1170, 1351, 1463, 1473, 1810, 2090
MfeI	CAATTG	2 cut(s)	125, 783
MflI	RGATCY	2 cut(s)	718, 1170
MhlI	GDGCHC	2 cut(s)	1151, 1272
MlsI	TGGCCA	1 cut(s)	224
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	2 cut(s)	647, 968
Mox20I	TGGCCA	1 cut(s)	224
MroXI	GAANNNNTTC	2 cut(s)	144, 1742
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	8 cut(s)	476, 924, 1344, 1575, 1667, 1805, 2118, 2127
MslI	CAYNNNNRTG	1 cut(s)	1968
Msp20I	TGGCCA	1 cut(s)	224
MspI	CCGG	5 cut(s)	183, 215, 234, 1159, 1291
MspR9I	CCNGG	2 cut(s)	432, 576
MunI	CAATTG	2 cut(s)	125, 783
Mva1269I	GAATGC	1 cut(s)	1588
MvaI	CCWGG	2 cut(s)	432, 576
MwoI	GCNNNNNNNGC	7 cut(s)	79, 140, 599, 1155, 1648, 1871, 1991
NdeII	GATC	8 cut(s)	718, 979, 1170, 1351, 1463, 1473, 1810, 2090
NlaIII	CATG	6 cut(s)	365, 519, 527, 855, 1224, 1967
NlaIV	GGNNCC	4 cut(s)	521, 566, 1197, 1373
NmuCI	GTSAC	2 cut(s)	406, 1998
NspI	RCATGY	1 cut(s)	1224
PceI	AGGCCT	2 cut(s)	535, 1076
PciI	ACATGT	1 cut(s)	1220
PctI	GAATGC	1 cut(s)	1588
PdmI	GAANNNNTTC	2 cut(s)	144, 1742
PfeI	GAWTC	7 cut(s)	49, 237, 374, 457, 1415, 2015, 2134
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	6 cut(s)	38, 313, 399, 859, 1328, 1500
PleI	GAGTC	2 cut(s)	646, 967
PpsI	GAGTC	2 cut(s)	646, 967
PpuMI	RGGWCCY	1 cut(s)	1901
PscI	ACATGT	1 cut(s)	1220
Psp124BI	GAGCTC	1 cut(s)	1272
Psp5II	RGGWCCY	1 cut(s)	1901
Psp6I	CCWGG	2 cut(s)	430, 574
PspGI	CCWGG	2 cut(s)	430, 574
PspN4I	GGNNCC	4 cut(s)	521, 566, 1197, 1373
PspPI	GGNCC	3 cut(s)	520, 1435, 1901
PspPPI	RGGWCCY	1 cut(s)	1901
PstI	CTGCAG	1 cut(s)	862
PsuI	RGATCY	2 cut(s)	718, 1170
RsaI	GTAC	5 cut(s)	582, 756, 1197, 1768, 2026
RsaNI	GTAC	5 cut(s)	581, 755, 1196, 1767, 2025
RseI	CAYNNNNRTG	1 cut(s)	1968
SacI	GAGCTC	1 cut(s)	1272
SaqAI	TTAA	8 cut(s)	476, 924, 1344, 1575, 1667, 1805, 2118, 2127
SatI	GCNGC	6 cut(s)	37, 312, 398, 858, 1327, 1499
Sau3AI	GATC	8 cut(s)	718, 979, 1170, 1351, 1463, 1473, 1810, 2090
Sau96I	GGNCC	3 cut(s)	520, 1435, 1901
SchI	GAGTC	2 cut(s)	647, 968
ScrFI	CCNGG	2 cut(s)	432, 576
SduI	GDGCHC	2 cut(s)	1151, 1272
SfaNI	GCATC	7 cut(s)	165, 516, 1145, 1216, 1700, 1883, 2108
SfcI	CTRYAG	3 cut(s)	603, 858, 1989
SinI	GGWCC	2 cut(s)	1435, 1901
SmiMI	CAYNNNNRTG	1 cut(s)	1968
SmlI	CTYRAG	3 cut(s)	463, 1175, 1755
SmoI	CTYRAG	3 cut(s)	463, 1175, 1755
SseBI	AGGCCT	2 cut(s)	535, 1076
SsiI	CCGC	5 cut(s)	36, 39, 189, 1433, 1853
SspI	AATATT	2 cut(s)	928, 1517
SspMI	CTAG	2 cut(s)	537, 765
SstI	GAGCTC	1 cut(s)	1272
StuI	AGGCCT	2 cut(s)	535, 1076
StyD4I	CCNGG	2 cut(s)	430, 574
TaaI	ACNGT	6 cut(s)	15, 731, 1209, 1376, 1771, 1789
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	5 cut(s)	197, 544, 709, 1312, 1476
TaqII	GACCGA	2 cut(s)	89, 1130
TatI	WGTACW	2 cut(s)	1766, 2024
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	7 cut(s)	49, 237, 374, 457, 1415, 2015, 2134
Tru1I	TTAA	8 cut(s)	476, 924, 1344, 1575, 1667, 1805, 2118, 2127
Tru9I	TTAA	8 cut(s)	476, 924, 1344, 1575, 1667, 1805, 2118, 2127
TscAI	CASTG	3 cut(s)	736, 1212, 1776
TseFI	GTSAC	2 cut(s)	406, 1998
TseI	GCWGC	5 cut(s)	311, 397, 857, 1326, 1498
Tsp45I	GTSAC	2 cut(s)	406, 1998
TspGWI	ACGGA	1 cut(s)	1580
TspRI	CASTG	3 cut(s)	736, 1212, 1776
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	1435, 1901
XapI	RAATTY	6 cut(s)	110, 1037, 1180, 1314, 1364, 1792
XceI	RCATGY	1 cut(s)	1224
XmiI	GTMKAC	1 cut(s)	789
XmnI	GAANNNNTTC	2 cut(s)	144, 1742
XspI	CTAG	2 cut(s)	537, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.