Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006629

Physical Location & Seq

Genomic Coordinates Reverse (-)

8230573 .. 8233025

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG099700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGAAGAAATCACCGTTGCCATTACAGAACGCAAGCGGCGCGAGTAAGAATCAGAAGCTCGGAAAGGAAGCTCTGGTGAAGCTACTGAGATGGCATTTCGGTCATCCGGAATTCAGAGGGAAGCAATTGGAGGCCATTGAAGCTGTTCTATCAGGAAGAGATTGTTTCTGCTTGATGCCAACCGGAGGCGGGAAGTCGATGTGTTATCAGATACCGGCGCTGGCCAAGAAGACCGGAATCGTGCTTGTTGTGTGTCCTTTGATAGCTTTGATGGAAAACCAAGTGATGGCTTTGAAGGAGAAAGGAATTGCTGCTGAATATCTATCCTCCACACAGACTACACAAGTCAAAAATAAGATACATGAAGACCTTGATTCTGGAAAACCATCTTTGAGGCTGCTATATGTGACGCCGGAATTGATTGCAACACCTGGATTTATGACAAAGCTGACAAAGATTCACTCAAGAGGGTTGTTAAATCTTATTGCCATAGACGAGGCACATTGCATCTCTTCATGGGGCCATGATTTTAGGCCTAGCTATCGAAAGCTGTCTTCTTTGAGGAGCCACCTCCCAGGTGTAGCAACATTAGCTTTGACAGCTACAGCCGTTCCTAAAGTTCAGAAGGATGTGATAGAGTCCTTACGCCTCCAAAACCCTTTGGTCCTAAAATCTTCTTTCAATCGTTCTAATATATATTATGAAGTTCGATACAAAGATCTTTTACACAATGTGTATGCTGATTTATCTGACGTACTAAAATCTAGTGGAGATATCTGTGCAATTGTCTACTGCCTTGAACGAACAATGTGTGATTACTTGTCTGTTCATCTATCACAAAACGGGATATCATGTGCTGCTTATCATGCAGGGTTGAATGATAAATTACGCAGTTCAGTTTTAGATGATTGGATTTCTTCTAAAATACAAGTTGTCGTGGCAACGGTGGCTTTTGGCTTGCTGTGGTGCATGCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000733 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0036310 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097617 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

326

Amino Acids

36.05

Weight (kDa)

9.13

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	42 - 207	5.8e-27	DEAD/DEAH box helicase
Helicase_C	PF00271	247 - 318	6.8e-06	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35740 AT4G35740
fragaria_vesca	FvH4_1g08920 FvH4_1g08920
malus_domestica	MD02G1094600.v1.1
prunus_persica	Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1
pyrus_communis	pycom02g07480
rosa_chinensis	RchiOBHm_Chr2g0095381
rosa_laevigata	RLG00000016560
rosa_multiflora	Rmu_co8503843.1_g000001 Rmu_ssc0000183.1_g000039
rosa_roxburghii	Rroxscaffold_2G00146420
rosa_rugosa	Rorug02G0050200 Rorug02G0050200 Rorug02G0050300
rosa_samantha	Rh2AG098400 Rh2AG098500 Rh2BG099600 Rh2BG099700 Rh2CG101600 Rh2CG101700 Rh2DG099200 Rh2DG099300
rosa_wichuraiana	Rw2G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	286
AccI	GTMKAC	1 cut(s)	789
AccII	CGCG	1 cut(s)	41
AccIII	TCCGGA	1 cut(s)	106
AciI	CCGC	2 cut(s)	36, 189
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	110
AcyI	GRCGYC	1 cut(s)	410
AdeI	CACNNNGTG	1 cut(s)	733
AfaI	GTAC	1 cut(s)	756
AfiI	CCNNNNNNNGG	3 cut(s)	185, 189, 286
AgsI	TTSAA	5 cut(s)	140, 295, 682, 800, 877
AjnI	CCWGG	2 cut(s)	430, 574
Aor13HI	TCCGGA	1 cut(s)	106
AoxI	GGCC	4 cut(s)	132, 222, 520, 533
ApeKI	GCWGC	4 cut(s)	311, 397, 857, 973
ApoI	RAATTY	1 cut(s)	110
Asp700I	GAANNNNTTC	1 cut(s)	144
AspLEI	GCGC	2 cut(s)	41, 220
AspS9I	GGNCC	2 cut(s)	520, 664
AsuHPI	GGTGA	2 cut(s)	3, 88
AvaII	GGWCC	1 cut(s)	664
BalI	TGGCCA	1 cut(s)	224
BbsI	GAAGAC	3 cut(s)	236, 372, 546
BbvI	GCAGC	3 cut(s)	298, 384, 844
BccI	CCATC	4 cut(s)	84, 265, 280, 394
BceAI	ACGGC	1 cut(s)	593
BciT130I	CCWGG	2 cut(s)	432, 576
BfaI	CTAG	2 cut(s)	537, 765
BfmI	CTRYAG	1 cut(s)	603
BfoI	RGCGCY	1 cut(s)	221
BglII	AGATCT	1 cut(s)	718
BisI	GCNGC	5 cut(s)	37, 312, 398, 858, 974
BlsI	GCNGC	5 cut(s)	38, 313, 399, 859, 975
Bme1390I	CCNGG	2 cut(s)	432, 576
Bme18I	GGWCC	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	520, 664
BmiI	GGNNCC	2 cut(s)	521, 566
BmrFI	CCNGG	2 cut(s)	432, 576
BmsI	GCATC	2 cut(s)	165, 516
BpiI	GAAGAC	3 cut(s)	236, 372, 546
BpuEI	CTTGAG	1 cut(s)	448
BsaHI	GRCGYC	1 cut(s)	410
BsaJI	CCNNGG	1 cut(s)	574
BsaWI	WCCGGW	3 cut(s)	106, 182, 233
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 189, 286
Bse118I	RCCGGY	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	502
BseAI	TCCGGA	1 cut(s)	106
BseBI	CCWGG	2 cut(s)	432, 576
BseDI	CCNNGG	1 cut(s)	574
BseGI	GGATG	2 cut(s)	103, 634
BseLI	CCNNNNNNNGG	3 cut(s)	185, 189, 286
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	577
BseXI	GCAGC	3 cut(s)	298, 384, 844
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	4 cut(s)	134, 224, 522, 535
BsiSI	CCGG	5 cut(s)	107, 183, 215, 234, 413
BslI	CCNNNNNNNGG	3 cut(s)	185, 189, 286
BsnI	GGCC	4 cut(s)	134, 224, 522, 535
Bsp13I	TCCGGA	1 cut(s)	106
Bsp143I	GATC	1 cut(s)	718
BspACI	CCGC	2 cut(s)	36, 189
BspANI	GGCC	4 cut(s)	134, 224, 522, 535
BspCNI	CTCAG	1 cut(s)	78
BspEI	TCCGGA	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	41
BspLI	GGNNCC	2 cut(s)	521, 566
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	574
BssMI	GATC	1 cut(s)	718
BssNI	GRCGYC	1 cut(s)	410
Bst2UI	CCWGG	2 cut(s)	432, 576
Bst4CI	ACNGT	2 cut(s)	15, 946
Bst6I	CTCTTC	2 cut(s)	151, 517
BstACI	GRCGYC	1 cut(s)	410
BstC8I	GCNNGC	4 cut(s)	34, 222, 959, 971
BstDEI	CTNAG	1 cut(s)	86
BstF5I	GGATG	2 cut(s)	103, 634
BstFNI	CGCG	1 cut(s)	41
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	2 cut(s)	41, 220
BstKTI	GATC	1 cut(s)	721
BstMBI	GATC	1 cut(s)	718
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 140, 590, 599, 866, 947
BstNI	CCWGG	2 cut(s)	432, 576
BstNSI	RCATGY	1 cut(s)	973
BstSCI	CCNGG	2 cut(s)	430, 574
BstSFI	CTRYAG	1 cut(s)	603
BstUI	CGCG	1 cut(s)	41
BstV1I	GCAGC	3 cut(s)	298, 384, 844
BstV2I	GAAGAC	3 cut(s)	236, 372, 546
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
BsuRI	GGCC	4 cut(s)	134, 224, 522, 535
BtsCI	GGATG	2 cut(s)	103, 634
Cac8I	GCNNGC	4 cut(s)	34, 222, 959, 971
CfoI	GCGC	2 cut(s)	41, 220
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	520, 664
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	755
CviAII	CATG	6 cut(s)	362, 516, 524, 852, 866, 970
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	1 cut(s)	720
DpnII	GATC	1 cut(s)	718
DraIII	CACNNNGTG	1 cut(s)	733
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	151, 517
EarI	CTCTTC	2 cut(s)	151, 517
Eco147I	AGGCCT	1 cut(s)	535
Eco32I	GATATC	2 cut(s)	775, 849
Eco47I	GGWCC	1 cut(s)	664
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	430, 574
EcoRV	GATATC	2 cut(s)	775, 849
FaeI	CATG	6 cut(s)	365, 519, 527, 855, 869, 973
FatI	CATG	6 cut(s)	361, 515, 523, 851, 865, 969
FauI	CCCGC	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	5 cut(s)	37, 312, 398, 858, 974
FokI	GGATG	2 cut(s)	90, 641
Fsp4HI	GCNGC	5 cut(s)	37, 312, 398, 858, 974
FspBI	CTAG	2 cut(s)	537, 765
GlaI	GCGC	2 cut(s)	40, 219
GluI	GCNGC	5 cut(s)	37, 312, 398, 858, 974
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	4 cut(s)	134, 224, 522, 535
HapII	CCGG	5 cut(s)	107, 183, 215, 234, 413
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	2 cut(s)	41, 220
Hin1I	GRCGYC	1 cut(s)	410
Hin1II	CATG	6 cut(s)	365, 519, 527, 855, 869, 973
Hin6I	GCGC	2 cut(s)	39, 218
HinP1I	GCGC	2 cut(s)	39, 218
HinfI	GANTC	5 cut(s)	49, 237, 374, 457, 638
HpaII	CCGG	5 cut(s)	107, 183, 215, 234, 413
HphI	GGTGA	2 cut(s)	3, 88
Hpy166II	GTNNAC	1 cut(s)	790
Hpy188I	TCNGA	6 cut(s)	54, 62, 116, 210, 624, 751
Hpy188III	TCNNGA	4 cut(s)	107, 153, 378, 465
Hpy8I	GTNNAC	1 cut(s)	790
HpyAV	CCTTC	2 cut(s)	289, 619
HpyCH4III	ACNGT	2 cut(s)	15, 946
HpyCH4IV	ACGT	1 cut(s)	753
HpyCH4V	TGCA	6 cut(s)	425, 507, 782, 869, 969, 973
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 140, 590, 599, 866, 947
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	753
Hsp92I	GRCGYC	1 cut(s)	410
Hsp92II	CATG	6 cut(s)	365, 519, 527, 855, 869, 973
HspAI	GCGC	2 cut(s)	39, 218
Kpn2I	TCCGGA	1 cut(s)	106
Kzo9I	GATC	1 cut(s)	718
LmnI	GCTCC	1 cut(s)	564
Lsp1109I	GCAGC	3 cut(s)	298, 384, 844
LweI	GCATC	2 cut(s)	165, 516
MaeI	CTAG	2 cut(s)	537, 765
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	1 cut(s)	720
MboI	GATC	1 cut(s)	718
MboII	GAAGA	8 cut(s)	16, 168, 241, 377, 504, 546, 666, 909
MfeI	CAATTG	2 cut(s)	125, 783
MflI	RGATCY	1 cut(s)	718
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	6 cut(s)	110, 125, 306, 416, 783, 884
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	1 cut(s)	647
Mox20I	TGGCCA	1 cut(s)	224
MroI	TCCGGA	1 cut(s)	106
MroXI	GAANNNNTTC	1 cut(s)	144
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	1 cut(s)	476
Msp20I	TGGCCA	1 cut(s)	224
MspI	CCGG	5 cut(s)	107, 183, 215, 234, 413
MspR9I	CCNGG	2 cut(s)	432, 576
MunI	CAATTG	2 cut(s)	125, 783
MvaI	CCWGG	2 cut(s)	432, 576
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	6 cut(s)	38, 140, 590, 599, 866, 947
NdeII	GATC	1 cut(s)	718
NlaIII	CATG	6 cut(s)	365, 519, 527, 855, 869, 973
NlaIV	GGNNCC	2 cut(s)	521, 566
NmuCI	GTSAC	1 cut(s)	406
NspI	RCATGY	1 cut(s)	973
PaeI	GCATGC	1 cut(s)	973
PceI	AGGCCT	1 cut(s)	535
PdmI	GAANNNNTTC	1 cut(s)	144
PfeI	GAWTC	4 cut(s)	49, 237, 374, 457
PflMI	CCANNNNNTGG	1 cut(s)	286
PkrI	GCNGC	5 cut(s)	38, 313, 399, 859, 975
PleI	GAGTC	1 cut(s)	646
PpsI	GAGTC	1 cut(s)	646
Psp6I	CCWGG	2 cut(s)	430, 574
PspGI	CCWGG	2 cut(s)	430, 574
PspN4I	GGNNCC	2 cut(s)	521, 566
PspPI	GGNCC	2 cut(s)	520, 664
PsuI	RGATCY	1 cut(s)	718
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	5 cut(s)	37, 312, 398, 858, 974
Sau3AI	GATC	1 cut(s)	718
Sau96I	GGNCC	2 cut(s)	520, 664
SchI	GAGTC	1 cut(s)	647
ScrFI	CCNGG	2 cut(s)	432, 576
SfaNI	GCATC	2 cut(s)	165, 516
SfcI	CTRYAG	1 cut(s)	603
SinI	GGWCC	1 cut(s)	664
SmlI	CTYRAG	1 cut(s)	463
SmoI	CTYRAG	1 cut(s)	463
SphI	GCATGC	1 cut(s)	973
Sse9I	AATT	6 cut(s)	110, 125, 306, 416, 783, 884
SseBI	AGGCCT	1 cut(s)	535
SsiI	CCGC	2 cut(s)	36, 189
SspMI	CTAG	2 cut(s)	537, 765
StuI	AGGCCT	1 cut(s)	535
StyD4I	CCNGG	2 cut(s)	430, 574
TaaI	ACNGT	2 cut(s)	15, 946
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	3 cut(s)	197, 544, 709
TaqII	GACCGA	1 cut(s)	89
TasI	AATT	6 cut(s)	110, 125, 306, 416, 783, 884
TauI	GCSGC	1 cut(s)	39
TfiI	GAWTC	4 cut(s)	49, 237, 374, 457
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	4 cut(s)	311, 397, 857, 973
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	5 cut(s)	17, 378, 504, 717, 818
Van91I	CCANNNNNTGG	1 cut(s)	286
VpaK11BI	GGWCC	1 cut(s)	664
XapI	RAATTY	1 cut(s)	110
XceI	RCATGY	1 cut(s)	973
XmiI	GTMKAC	1 cut(s)	789
XmnI	GAANNNNTTC	1 cut(s)	144
XspI	CTAG	2 cut(s)	537, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.