Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8503843.1

Orthogroup ID

OG0006629

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2723

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8503843.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1093 bp

atggctttgaaggagaaaggaattgctgctgaatatctatcctccacacagactacacaagtcaaaaataagatacatgaagaccttgattctggaaaaccatctttgaggctgctatatgtgactccggaattgattgcaacacctggatttatgacaaagctgacaaagattcactcaagagggctgttaaatcttattgccatagacgaggcacattgcatctcttcatggggccatgattttaggcctagctatcgaaagctgtcgtctttgaggagccacctcccaggtgtaccaacattagctttgacagctacagccgttcctaaagttcagaaggatgtaatagagtccttacgcctccaaaaccctttggtcctaaaatcttctttcaatcgttctaatatatattatgaagttcgatacaaagatcttttacacaatgtgtatgctgatttatctgacgtactaaaatctagtggagatatctgtgcaattgtctactgccttgaacgaacaatgtgtgattacttgtctgttcatctatcacaaaacgggatatcatgtgctgcttatcatgcagggttgaatgataaattacgcagttcagttttagatgattggatttcttctaaaatacaagttgtcgtggcaacggtggcttttgggatgggtatagatagaaaagatgtcagaattgtttgccattttaatattccaaagtcaatggaaggcttctaccaagagtctggtagagctggtcgtgatcaattaccctccagaagcctattgtattatggaattgaagattccaagagaatgaaatttattctaagcaatgctgagaacaagaaatcaaaggcctcaaactcacaagaagagttgtcaaaaaaatccctgaccgactttcaacagatggttgagtattgtgagggctctggatgccggaggaaaaagatccttgagaactttggtgaaaaggtacctgtaacactgtgtagcaaaacatgtgatgcctgcaaacatccaaacctcgtagccaaatacttggaggagctcgcaactgcttgtatcgtccggcagaaagctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000733 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0036310 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097617 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

364

Amino Acids

40.75

Weight (kDa)

8.99

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35740 AT4G35740
fragaria_vesca	FvH4_1g08920 FvH4_1g08920
malus_domestica	MD02G1094600.v1.1
prunus_persica	Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1
pyrus_communis	pycom02g07480
rosa_chinensis	RchiOBHm_Chr2g0095381
rosa_laevigata	RLG00000016560
rosa_multiflora	Rmu_co8503843.1_g000001 Rmu_ssc0000183.1_g000039
rosa_roxburghii	Rroxscaffold_2G00146420
rosa_rugosa	Rorug02G0050200 Rorug02G0050200 Rorug02G0050300
rosa_samantha	Rh2AG098400 Rh2AG098500 Rh2BG099600 Rh2BG099700 Rh2CG101600 Rh2CG101700 Rh2DG099200 Rh2DG099300
rosa_wichuraiana	Rw2G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	985
AccB1I	GGYRCC	1 cut(s)	985
AccI	GTMKAC	1 cut(s)	504
AccIII	TCCGGA	1 cut(s)	127
AclWI	GGATC	1 cut(s)	955
AcsI	RAATTY	1 cut(s)	827
AdeI	CACNNNGTG	1 cut(s)	448
AfaI	GTAC	3 cut(s)	297, 471, 987
AflIII	ACRYGT	1 cut(s)	1010
AgsI	TTSAA	6 cut(s)	10, 397, 515, 592, 809, 914
AjnI	CCWGG	2 cut(s)	145, 289
AluBI	AGCT	8 cut(s)	163, 255, 265, 308, 317, 761, 1060, 1091
AluI	AGCT	8 cut(s)	163, 255, 265, 308, 317, 761, 1060, 1091
Alw21I	GWGCWC	1 cut(s)	1062
AlwI	GGATC	1 cut(s)	955
Aor13HI	TCCGGA	1 cut(s)	127
AoxI	GGCC	3 cut(s)	235, 248, 864
ApeKI	GCWGC	3 cut(s)	26, 112, 572
ApoI	RAATTY	1 cut(s)	827
Asp718I	GGTACC	1 cut(s)	985
AspS9I	GGNCC	2 cut(s)	235, 379
AsuHPI	GGTGA	1 cut(s)	989
AvaII	GGWCC	1 cut(s)	379
BanI	GGYRCC	1 cut(s)	985
BanII	GRGCYC	2 cut(s)	941, 1062
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	1062
BbvI	GCAGC	3 cut(s)	13, 99, 559
BccI	CCATC	3 cut(s)	109, 667, 913
BceAI	ACGGC	1 cut(s)	308
BciT130I	CCWGG	2 cut(s)	147, 291
BclI	TGATCA	1 cut(s)	769
BfaI	CTAG	2 cut(s)	252, 480
BfmI	CTRYAG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	433
BisI	GCNGC	3 cut(s)	27, 113, 573
BlsI	GCNGC	3 cut(s)	28, 114, 574
Bme1390I	CCNGG	2 cut(s)	147, 291
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	2 cut(s)	235, 379
BmiI	GGNNCC	3 cut(s)	236, 281, 987
BmrFI	CCNGG	2 cut(s)	147, 291
BmsI	GCATC	3 cut(s)	231, 935, 1006
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	766
BpuEI	CTTGAG	2 cut(s)	163, 986
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	127
Bse3DI	GCAATG	2 cut(s)	217, 847
BseAI	TCCGGA	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	147, 291
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	4 cut(s)	349, 678, 950, 1027
BseMI	GCAATG	2 cut(s)	217, 847
BseMII	CTCAG	1 cut(s)	837
BseRI	GAGGAG	2 cut(s)	292, 1070
BseXI	GCAGC	3 cut(s)	13, 99, 559
BshFI	GGCC	3 cut(s)	237, 250, 866
BshNI	GGYRCC	1 cut(s)	985
BsiHKAI	GWGCWC	1 cut(s)	1062
BsiSI	CCGG	3 cut(s)	128, 949, 1081
BsnI	GGCC	3 cut(s)	237, 250, 866
Bsp1286I	GDGCHC	2 cut(s)	941, 1062
Bsp13I	TCCGGA	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	433, 769, 960
BspANI	GGCC	3 cut(s)	237, 250, 866
BspCNI	CTCAG	1 cut(s)	838
BspEI	TCCGGA	1 cut(s)	127
BspLI	GGNNCC	3 cut(s)	236, 281, 987
BspPI	GGATC	1 cut(s)	955
BspT107I	GGYRCC	1 cut(s)	985
BsrDI	GCAATG	2 cut(s)	217, 847
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	3 cut(s)	433, 769, 960
Bst2UI	CCWGG	2 cut(s)	147, 291
Bst4CI	ACNGT	2 cut(s)	661, 999
Bst6I	CTCTTC	2 cut(s)	232, 876
BstC8I	GCNNGC	2 cut(s)	1021, 1062
BstDEI	CTNAG	2 cut(s)	836, 846
BstF5I	GGATG	4 cut(s)	349, 678, 950, 1027
BstKTI	GATC	3 cut(s)	436, 772, 963
BstMBI	GATC	3 cut(s)	433, 769, 960
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 581, 662, 945
BstNI	CCWGG	2 cut(s)	147, 291
BstNSI	RCATGY	1 cut(s)	1014
BstSCI	CCNGG	2 cut(s)	145, 289
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	3 cut(s)	13, 99, 559
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	2 cut(s)	433, 960
BstXI	CCANNNNNNTGG	2 cut(s)	752, 1051
BstYI	RGATCY	2 cut(s)	433, 960
BsuRI	GGCC	3 cut(s)	237, 250, 866
BtsCI	GGATG	4 cut(s)	349, 678, 950, 1027
BtsIMutI	CAGTG	1 cut(s)	995
Cac8I	GCNNGC	2 cut(s)	1021, 1062
Cfr13I	GGNCC	2 cut(s)	235, 379
Csp6I	GTAC	3 cut(s)	296, 470, 986
CviAII	CATG	6 cut(s)	77, 231, 239, 567, 581, 1011
CviQI	GTAC	3 cut(s)	296, 470, 986
DdeI	CTNAG	2 cut(s)	836, 846
DpnI	GATC	3 cut(s)	435, 771, 962
DpnII	GATC	3 cut(s)	433, 769, 960
DraIII	CACNNNGTG	1 cut(s)	448
Eam1104I	CTCTTC	2 cut(s)	232, 876
EarI	CTCTTC	2 cut(s)	232, 876
Ecl136II	GAGCTC	1 cut(s)	1060
Eco147I	AGGCCT	2 cut(s)	250, 866
Eco24I	GRGCYC	2 cut(s)	941, 1062
Eco32I	GATATC	2 cut(s)	490, 564
Eco47I	GGWCC	1 cut(s)	379
Eco53kI	GAGCTC	1 cut(s)	1060
EcoICRI	GAGCTC	1 cut(s)	1060
EcoRII	CCWGG	2 cut(s)	145, 289
EcoRV	GATATC	2 cut(s)	490, 564
EcoT38I	GRGCYC	2 cut(s)	941, 1062
FaeI	CATG	6 cut(s)	80, 234, 242, 570, 584, 1014
FatI	CATG	6 cut(s)	76, 230, 238, 566, 580, 1010
FbaI	TGATCA	1 cut(s)	769
FblI	GTMKAC	1 cut(s)	504
Fnu4HI	GCNGC	3 cut(s)	27, 113, 573
FokI	GGATG	4 cut(s)	356, 685, 957, 1014
FriOI	GRGCYC	2 cut(s)	941, 1062
Fsp4HI	GCNGC	3 cut(s)	27, 113, 573
FspBI	CTAG	2 cut(s)	252, 480
GluI	GCNGC	3 cut(s)	27, 113, 573
GsuI	CTGGAG	1 cut(s)	766
HaeIII	GGCC	3 cut(s)	237, 250, 866
HapII	CCGG	3 cut(s)	128, 949, 1081
Hin1II	CATG	6 cut(s)	80, 234, 242, 570, 584, 1014
HinfI	GANTC	6 cut(s)	89, 124, 172, 353, 749, 812
HpaII	CCGG	3 cut(s)	128, 949, 1081
HphI	GGTGA	1 cut(s)	989
Hpy166II	GTNNAC	2 cut(s)	296, 505
Hpy188I	TCNGA	3 cut(s)	339, 466, 698
Hpy188III	TCNNGA	6 cut(s)	93, 128, 180, 767, 783, 942
Hpy8I	GTNNAC	2 cut(s)	296, 505
HpyAV	CCTTC	3 cut(s)	4, 334, 728
HpyCH4III	ACNGT	2 cut(s)	661, 999
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	5 cut(s)	140, 222, 497, 584, 1023
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 581, 662, 945
HpyF3I	CTNAG	2 cut(s)	836, 846
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	6 cut(s)	80, 234, 242, 570, 584, 1014
Kpn2I	TCCGGA	1 cut(s)	127
KpnI	GGTACC	1 cut(s)	989
Ksp22I	TGATCA	1 cut(s)	769
Kzo9I	GATC	3 cut(s)	433, 769, 960
LmnI	GCTCC	2 cut(s)	279, 1057
Lsp1109I	GCAGC	3 cut(s)	13, 99, 559
LweI	GCATC	3 cut(s)	231, 935, 1006
MaeI	CTAG	2 cut(s)	252, 480
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	2 cut(s)	121, 991
MalI	GATC	3 cut(s)	435, 771, 962
MboI	GATC	3 cut(s)	433, 769, 960
MboII	GAAGA	6 cut(s)	92, 219, 381, 624, 821, 893
MfeI	CAATTG	1 cut(s)	498
MflI	RGATCY	2 cut(s)	433, 960
MhlI	GDGCHC	2 cut(s)	941, 1062
MluCI	AATT	8 cut(s)	21, 131, 498, 599, 699, 773, 804, 827
MlyI	GAGTC	3 cut(s)	118, 362, 758
MroI	TCCGGA	1 cut(s)	127
MseI	TTAA	2 cut(s)	191, 714
MspI	CCGG	3 cut(s)	128, 949, 1081
MspR9I	CCNGG	2 cut(s)	147, 291
MunI	CAATTG	1 cut(s)	498
MvaI	CCWGG	2 cut(s)	147, 291
MwoI	GCNNNNNNNGC	4 cut(s)	314, 581, 662, 945
NdeII	GATC	3 cut(s)	433, 769, 960
NlaIII	CATG	6 cut(s)	80, 234, 242, 570, 584, 1014
NlaIV	GGNNCC	3 cut(s)	236, 281, 987
NmuCI	GTSAC	1 cut(s)	121
NspI	RCATGY	1 cut(s)	1014
PceI	AGGCCT	2 cut(s)	250, 866
PciI	ACATGT	1 cut(s)	1010
PfeI	GAWTC	3 cut(s)	89, 172, 812
PkrI	GCNGC	3 cut(s)	28, 114, 574
PleI	GAGTC	3 cut(s)	118, 361, 757
PpsI	GAGTC	3 cut(s)	118, 361, 757
PscI	ACATGT	1 cut(s)	1010
Psp124BI	GAGCTC	1 cut(s)	1062
Psp6I	CCWGG	2 cut(s)	145, 289
PspGI	CCWGG	2 cut(s)	145, 289
PspN4I	GGNNCC	3 cut(s)	236, 281, 987
PspPI	GGNCC	2 cut(s)	235, 379
PsuI	RGATCY	2 cut(s)	433, 960
RsaI	GTAC	3 cut(s)	297, 471, 987
RsaNI	GTAC	3 cut(s)	296, 470, 986
SacI	GAGCTC	1 cut(s)	1062
SaqAI	TTAA	2 cut(s)	191, 714
SatI	GCNGC	3 cut(s)	27, 113, 573
Sau3AI	GATC	3 cut(s)	433, 769, 960
Sau96I	GGNCC	2 cut(s)	235, 379
SchI	GAGTC	3 cut(s)	118, 362, 758
ScrFI	CCNGG	2 cut(s)	147, 291
SduI	GDGCHC	2 cut(s)	941, 1062
SfaNI	GCATC	3 cut(s)	231, 935, 1006
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	1 cut(s)	379
SmlI	CTYRAG	2 cut(s)	178, 965
SmoI	CTYRAG	2 cut(s)	178, 965
Sse9I	AATT	8 cut(s)	21, 131, 498, 599, 699, 773, 804, 827
SseBI	AGGCCT	2 cut(s)	250, 866
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	2 cut(s)	252, 480
SstI	GAGCTC	1 cut(s)	1062
StuI	AGGCCT	2 cut(s)	250, 866
StyD4I	CCNGG	2 cut(s)	145, 289
TaaI	ACNGT	2 cut(s)	661, 999
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	2 cut(s)	259, 424
TaqII	GACCGA	1 cut(s)	920
TasI	AATT	8 cut(s)	21, 131, 498, 599, 699, 773, 804, 827
TfiI	GAWTC	3 cut(s)	89, 172, 812
Tru1I	TTAA	2 cut(s)	191, 714
Tru9I	TTAA	2 cut(s)	191, 714
TscAI	CASTG	1 cut(s)	1002
TseFI	GTSAC	1 cut(s)	121
TseI	GCWGC	3 cut(s)	26, 112, 572
Tsp45I	GTSAC	1 cut(s)	121
TspDTI	ATGAA	5 cut(s)	93, 219, 432, 533, 839
TspRI	CASTG	1 cut(s)	1002
VpaK11BI	GGWCC	1 cut(s)	379
XapI	RAATTY	1 cut(s)	827
XceI	RCATGY	1 cut(s)	1014
XmiI	GTMKAC	1 cut(s)	504
XspI	CTAG	2 cut(s)	252, 480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.