Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006629

Physical Location & Seq

Genomic Coordinates Reverse (-)

8792783 .. 8795265

Gene Structure 2483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG101600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1260 bp

ATGGGTATAGATAGAAAAGATGTCAGAATTGTTTGCCATTTTAATATTCCAAAGTCAATGGAAGGCTTCTACCAAGAGTCTGGTAGAGCTGGTCGTGATCAATTACCCTCCAGAAGCCTATTGTATTATGGAATTGAAGATTGCAAGAGAATGAAATTTATTCTAAGCAATGCTGAGAACAAGAAATCAAAGGCCTCAAATTCACAAGAAGAGTTGTCAAAAAAATCCCTGACCGACTTTCAACAGATGGTTGAGTATTGTGAGGGCTCTGGATGCCGGAGGAAAAAGATCCTTGAGAATTTTGGTGAAAAGGTACCTGTAACACTGTGTAGCAAAACATGTGATGCCTGCAAACATCCAAACCTCGTAGCCAAATACTTGGAGGAGCTTGCAACTGCTTGTATCGTCCGGCAGAAAGCTGGTTCATCTCGAATTTTTGTGGGCAGCTCCTCAAATAAGGTTAATGAAGATCAGTCCTCTGAATTCTGGAACCGTGATGATGAAGCAAGTTGTTCTGAGGAAGACATATCTGATTCTGATGATGATGTTGCGGACCTTGTAGCTGTCAAGAGCCTTACCAGAGCAAAGTTGATCGATGAAAAATTGGAAGCCTTGCAGCGTGCAGAAGAAAAATATTACCAGAATAAATCTGATAAGCAGACGGATAAACTTAACAAGAATGCTATATCTGATACGCTGAGAGAAGCAAGCAAGCAGAGATTAGAAAATGCTGTAAAGCAGGCTCAGCAACGACTTGGAAGCTTAAAGATTGAGGTGGAAAAATCGGCATCTTTCCTTGAAAATGAATGTTACAAAAAATATGGGAAAACTGGGAAATCATTCTATTATTCTCAAGTCGCAAGCACAGTGAGGTGGTTATCAACCGTAAATTCTACCGACTTAACTGATCGTCTCTGCCCCATAACCAGTTCCCCGTCAGAGAATACTCCGCTCAAAACAGCACCTTCTGCATCACAATCGCCATTGGTGGAGACAGGACCTTTTGCAACGCCATCACCCTTGGTGGACAGAGCAACAGAAATCACCAGAAATGACTTACATGAGAGTGTTAGACTGGAAGCTTCTGTAGCTCTGTCACCAACGCAAAGTGATTCCCCAAGTACAATTTTGCCAGCAATTCCATCCTTCTCAGAGTTTATCAACAGCAAAAAGGTGACAGACAACAGATCAAGTGCATCGGAAAAGCAATCCCCTAATGGGGTTAAGAAGAATCCAGAGAAGAAAATGAGGTTACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000733 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0036310 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097617 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

419

Amino Acids

46.8

Weight (kDa)

8.48

Isoelectric Point (pI)

60.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecQ_Zn_bind	PF16124	46 - 118	1e-12	RecQ zinc-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35740 AT4G35740
fragaria_vesca	FvH4_1g08920 FvH4_1g08920
malus_domestica	MD02G1094600.v1.1
prunus_persica	Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1
pyrus_communis	pycom02g07480
rosa_chinensis	RchiOBHm_Chr2g0095381
rosa_laevigata	RLG00000016560
rosa_multiflora	Rmu_co8503843.1_g000001 Rmu_ssc0000183.1_g000039
rosa_roxburghii	Rroxscaffold_2G00146420
rosa_rugosa	Rorug02G0050200 Rorug02G0050200 Rorug02G0050300
rosa_samantha	Rh2AG098400 Rh2AG098500 Rh2BG099600 Rh2BG099700 Rh2CG101600 Rh2CG101700 Rh2DG099200 Rh2DG099300
rosa_wichuraiana	Rw2G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	952
AciI	CCGC	2 cut(s)	551, 950
AclWI	GGATC	1 cut(s)	283
AcsI	RAATTY	6 cut(s)	155, 199, 298, 432, 482, 889
AfaI	GTAC	2 cut(s)	315, 1123
AfiI	CCNNNNNNNGG	2 cut(s)	1218, 1219
AflIII	ACRYGT	1 cut(s)	338
AgsI	TTSAA	3 cut(s)	137, 242, 800
AluBI	AGCT	8 cut(s)	89, 388, 419, 447, 563, 762, 1082, 1091
AluI	AGCT	8 cut(s)	89, 388, 419, 447, 563, 762, 1082, 1091
Alw26I	GTCTC	2 cut(s)	917, 986
AlwI	GGATC	1 cut(s)	283
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	444, 616
ApoI	RAATTY	6 cut(s)	155, 199, 298, 432, 482, 889
Asp700I	GAANNNNTTC	1 cut(s)	839
Asp718I	GGTACC	1 cut(s)	313
AspS9I	GGNCC	2 cut(s)	553, 998
AsuHPI	GGTGA	5 cut(s)	317, 1008, 1036, 1089, 1186
AvaII	GGWCC	2 cut(s)	553, 998
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	528
BbvI	GCAGC	2 cut(s)	456, 628
BccI	CCATC	3 cut(s)	241, 1021, 1150
BcgI	CGANNNNNNTGC	2 cut(s)	960, 994
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	917, 986
BfmI	CTRYAG	1 cut(s)	1086
BisI	GCNGC	2 cut(s)	445, 617
BlpI	GCTNAGC	1 cut(s)	744
BlsI	GCNGC	2 cut(s)	446, 618
Bme18I	GGWCC	2 cut(s)	553, 998
BmgT120I	GGNCC	2 cut(s)	553, 998
BmiI	GGNNCC	2 cut(s)	315, 491
BmrI	ACTGGG	1 cut(s)	840
BmsI	GCATC	5 cut(s)	263, 334, 797, 980, 1205
BmuI	ACTGGG	1 cut(s)	840
BpiI	GAAGAC	1 cut(s)	528
BpmI	CTGGAG	1 cut(s)	94
Bpu1102I	GCTNAGC	1 cut(s)	744
BpuEI	CTTGAG	2 cut(s)	314, 837
Bsa29I	ATCGAT	1 cut(s)	594
BsaJI	CCNNGG	1 cut(s)	1020
Bsc4I	CCNNNNNNNGG	2 cut(s)	1218, 1219
Bse1I	ACTGG	3 cut(s)	835, 927, 1080
Bse3DI	GCAATG	1 cut(s)	175
BseCI	ATCGAT	1 cut(s)	594
BseDI	CCNNGG	1 cut(s)	1020
BseGI	GGATG	3 cut(s)	278, 355, 1142
BseLI	CCNNNNNNNGG	2 cut(s)	1218, 1219
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	5 cut(s)	165, 507, 689, 758, 1164
BseNI	ACTGG	3 cut(s)	835, 927, 1080
BseRI	GAGGAG	2 cut(s)	398, 439
BseXI	GCAGC	2 cut(s)	456, 628
BsgI	GTGCAG	1 cut(s)	642
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	313
BshVI	ATCGAT	1 cut(s)	594
BsiSI	CCGG	2 cut(s)	277, 409
BslI	CCNNNNNNNGG	2 cut(s)	1218, 1219
BsmAI	GTCTC	2 cut(s)	917, 986
BsmBI	CGTCTC	1 cut(s)	917
BsmI	GAATGC	1 cut(s)	685
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	269
Bsp143I	GATC	6 cut(s)	97, 288, 469, 591, 907, 1187
Bsp1720I	GCTNAGC	1 cut(s)	744
BspACI	CCGC	2 cut(s)	551, 950
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	5 cut(s)	166, 508, 690, 757, 1163
BspDI	ATCGAT	1 cut(s)	594
BspLI	GGNNCC	2 cut(s)	315, 491
BspPI	GGATC	1 cut(s)	283
BspT107I	GGYRCC	1 cut(s)	313
BsrBI	CCGCTC	1 cut(s)	952
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	3 cut(s)	835, 927, 1080
BssECI	CCNNGG	1 cut(s)	1020
BssMI	GATC	6 cut(s)	97, 288, 469, 591, 907, 1187
BssT1I	CCWWGG	1 cut(s)	1020
Bst4CI	ACNGT	4 cut(s)	327, 494, 868, 886
Bst6I	CTCTTC	1 cut(s)	204
BstAPI	GCANNNNNTGC	1 cut(s)	968
BstC8I	GCNNGC	8 cut(s)	349, 390, 621, 709, 713, 741, 862, 1134
BstDEI	CTNAG	6 cut(s)	164, 174, 516, 698, 744, 1150
BstF5I	GGATG	3 cut(s)	278, 355, 1142
BstKTI	GATC	6 cut(s)	100, 291, 472, 594, 910, 1190
BstMAI	GTCTC	2 cut(s)	917, 986
BstMBI	GATC	6 cut(s)	97, 288, 469, 591, 907, 1187
BstMWI	GCNNNNNNNGC	4 cut(s)	273, 745, 968, 1088
BstNSI	RCATGY	1 cut(s)	342
BstSFI	CTRYAG	1 cut(s)	1086
BstV1I	GCAGC	2 cut(s)	456, 628
BstV2I	GAAGAC	1 cut(s)	528
BstX2I	RGATCY	1 cut(s)	288
BstXI	CCANNNNNNTGG	2 cut(s)	80, 379
BstYI	RGATCY	1 cut(s)	288
Bsu15I	ATCGAT	1 cut(s)	594
BsuRI	GGCC	1 cut(s)	194
BsuTUI	ATCGAT	1 cut(s)	594
BtsCI	GGATG	3 cut(s)	278, 355, 1142
BtsIMutI	CAGTG	2 cut(s)	323, 873
Cac8I	GCNNGC	8 cut(s)	349, 390, 621, 709, 713, 741, 862, 1134
Cfr13I	GGNCC	2 cut(s)	553, 998
ClaI	ATCGAT	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	314, 1122
CviAII	CATG	2 cut(s)	339, 1061
CviQI	GTAC	2 cut(s)	314, 1122
DdeI	CTNAG	6 cut(s)	164, 174, 516, 698, 744, 1150
DpnI	GATC	6 cut(s)	99, 290, 471, 593, 909, 1189
DpnII	GATC	6 cut(s)	97, 288, 469, 591, 907, 1187
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	1020
Eco147I	AGGCCT	1 cut(s)	194
Eco24I	GRGCYC	1 cut(s)	269
Eco47I	GGWCC	2 cut(s)	553, 998
EcoO109I	RGGNCCY	1 cut(s)	998
EcoRI	GAATTC	1 cut(s)	482
EcoT14I	CCWWGG	1 cut(s)	1020
EcoT38I	GRGCYC	1 cut(s)	269
ErhI	CCWWGG	1 cut(s)	1020
Esp3I	CGTCTC	1 cut(s)	917
FaeI	CATG	2 cut(s)	342, 1064
FaiI	YATR	8 cut(s)	8, 129, 340, 527, 686, 822, 923, 1062
FatI	CATG	2 cut(s)	338, 1060
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	445, 617
FokI	GGATG	3 cut(s)	285, 342, 1129
FriOI	GRGCYC	1 cut(s)	269
Fsp4HI	GCNGC	2 cut(s)	445, 617
GluI	GCNGC	2 cut(s)	445, 617
GsuI	CTGGAG	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	277, 409
Hin1II	CATG	2 cut(s)	342, 1064
HindIII	AAGCTT	2 cut(s)	760, 1080
HinfI	GANTC	4 cut(s)	77, 533, 1112, 1231
HpaII	CCGG	2 cut(s)	277, 409
HphI	GGTGA	5 cut(s)	317, 1008, 1036, 1089, 1186
Hpy166II	GTNNAC	1 cut(s)	1027
Hpy188III	TCNNGA	7 cut(s)	95, 111, 270, 429, 487, 568, 1235
Hpy8I	GTNNAC	1 cut(s)	1027
HpyAV	CCTTC	3 cut(s)	56, 975, 1156
HpyCH4III	ACNGT	4 cut(s)	327, 494, 868, 886
HpyCH4V	TGCA	8 cut(s)	144, 351, 392, 616, 623, 971, 1007, 1196
HpyF10VI	GCNNNNNNNGC	4 cut(s)	273, 745, 968, 1088
HpyF3I	CTNAG	6 cut(s)	164, 174, 516, 698, 744, 1150
Hsp92II	CATG	2 cut(s)	342, 1064
KpnI	GGTACC	1 cut(s)	317
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	6 cut(s)	97, 288, 469, 591, 907, 1187
LmnI	GCTCC	2 cut(s)	385, 452
Lsp1109I	GCAGC	2 cut(s)	456, 628
LweI	GCATC	5 cut(s)	263, 334, 797, 980, 1205
MaeIII	GTNAC	5 cut(s)	319, 809, 1095, 1174, 1251
MalI	GATC	6 cut(s)	99, 290, 471, 593, 909, 1189
MbiI	CCGCTC	1 cut(s)	952
MboI	GATC	6 cut(s)	97, 288, 469, 591, 907, 1187
MboII	GAAGA	7 cut(s)	149, 221, 479, 533, 638, 1240, 1252
MflI	RGATCY	1 cut(s)	288
MhlI	GDGCHC	1 cut(s)	269
MlyI	GAGTC	1 cut(s)	86
MroXI	GAANNNNTTC	1 cut(s)	839
MseI	TTAA	6 cut(s)	42, 462, 672, 764, 902, 1224
MslI	CAYNNNNRTG	1 cut(s)	1065
MspI	CCGG	2 cut(s)	277, 409
Mva1269I	GAATGC	1 cut(s)	685
MwoI	GCNNNNNNNGC	4 cut(s)	273, 745, 968, 1088
NdeII	GATC	6 cut(s)	97, 288, 469, 591, 907, 1187
NlaIII	CATG	2 cut(s)	342, 1064
NlaIV	GGNNCC	2 cut(s)	315, 491
NmuCI	GTSAC	2 cut(s)	1095, 1174
NspI	RCATGY	1 cut(s)	342
PceI	AGGCCT	1 cut(s)	194
PciI	ACATGT	1 cut(s)	338
PctI	GAATGC	1 cut(s)	685
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	3 cut(s)	533, 1112, 1231
PkrI	GCNGC	2 cut(s)	446, 618
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
PpuMI	RGGWCCY	1 cut(s)	998
PscI	ACATGT	1 cut(s)	338
Psp5II	RGGWCCY	1 cut(s)	998
PspN4I	GGNNCC	2 cut(s)	315, 491
PspPI	GGNCC	2 cut(s)	553, 998
PspPPI	RGGWCCY	1 cut(s)	998
PsuI	RGATCY	1 cut(s)	288
RsaI	GTAC	2 cut(s)	315, 1123
RsaNI	GTAC	2 cut(s)	314, 1122
RseI	CAYNNNNRTG	1 cut(s)	1065
SaqAI	TTAA	6 cut(s)	42, 462, 672, 764, 902, 1224
SatI	GCNGC	2 cut(s)	445, 617
Sau3AI	GATC	6 cut(s)	97, 288, 469, 591, 907, 1187
Sau96I	GGNCC	2 cut(s)	553, 998
SchI	GAGTC	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	269
SfaNI	GCATC	5 cut(s)	263, 334, 797, 980, 1205
SfcI	CTRYAG	1 cut(s)	1086
SinI	GGWCC	2 cut(s)	553, 998
SmiMI	CAYNNNNRTG	1 cut(s)	1065
SmlI	CTYRAG	2 cut(s)	293, 852
SmoI	CTYRAG	2 cut(s)	293, 852
SseBI	AGGCCT	1 cut(s)	194
SsiI	CCGC	2 cut(s)	551, 950
SspI	AATATT	2 cut(s)	46, 635
StuI	AGGCCT	1 cut(s)	194
StyI	CCWWGG	1 cut(s)	1020
TaaI	ACNGT	4 cut(s)	327, 494, 868, 886
TaqI	TCGA	2 cut(s)	430, 594
TaqII	GACCGA	1 cut(s)	248
TatI	WGTACW	1 cut(s)	1121
TfiI	GAWTC	3 cut(s)	533, 1112, 1231
Tru1I	TTAA	6 cut(s)	42, 462, 672, 764, 902, 1224
Tru9I	TTAA	6 cut(s)	42, 462, 672, 764, 902, 1224
TscAI	CASTG	2 cut(s)	330, 873
TseFI	GTSAC	2 cut(s)	1095, 1174
TseI	GCWGC	2 cut(s)	444, 616
Tsp45I	GTSAC	2 cut(s)	1095, 1174
TspDTI	ATGAA	6 cut(s)	167, 414, 480, 516, 612, 819
TspGWI	ACGGA	1 cut(s)	677
TspRI	CASTG	2 cut(s)	330, 873
VpaK11BI	GGWCC	2 cut(s)	553, 998
XapI	RAATTY	6 cut(s)	155, 199, 298, 432, 482, 889
XceI	RCATGY	1 cut(s)	342
XmnI	GAANNNNTTC	1 cut(s)	839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.