Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006629

Physical Location & Seq

Genomic Coordinates Reverse (-)

3870404 .. 3873394

Gene Structure 2991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0050200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGAGCTGGGAAAACAAGTTTGGTATTGAGATTTGTCACAGGAAAATTTTTGGAGTACCAGGAATCAACTATTGGAGCAGCTTTCTTTACTCAGGTTCTGTCATTGAATGAAGCTACCATAAAATTTGATATATGGGACACAGCAGGTCAGGAACGTTACCATAGCCTGGCTCCAATGTATTACCGTGGCGCTGCTGCAGCTGTTGTGGTCTATGATATCACAAGCATGGAGTCATTTGTACGAGCAAAGAAGTGGGTTTTTGAATTGCAAAGACAAGCAAATCCAACTTTAATAATGTTCTTAGCTGGAAACAAGGCTGACTTGGAAGAGAAGAGAAAAGTAGGGTCTGAGGAAGGTGAGCAATATGCTAAAGAAAATGGCTTGGTGTTTCTTGAAACATCTGCAAAAACTGCACAGAATGTGAATGAGCTCTTTTATGAAATAGCAAAAAAATTGGCTAAGGCTACCCCTTCTCGTCAGACTGGGATAAAATTGCACAGCAGATCACAACCAAGCAGCAGGAGATATTGTTGCTCTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000724 GO:0000725 GO:0000733 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009378 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032392 GO:0032508 GO:0033554 GO:0034641 GO:0036310 GO:0042623 GO:0043138 GO:0043140 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0070035 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0097617 GO:0140097 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03440 ko03460 map03440 map03460

Pfam Domains

Protein Families

DEAD Helicase_C RecQ_Zn_bind

Protein Analysis

181

Amino Acids

20.31

Weight (kDa)

9.16

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	2 - 154	5.3e-55	Ras family
Roc	PF08477	2 - 108	7e-29	Ras of Complex, Roc, domain of DAPkinase
Arf	PF00025	2 - 149	6.4e-10	ADP-ribosylation factor family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006629)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G35740 AT4G35740
fragaria_vesca	FvH4_1g08920 FvH4_1g08920
malus_domestica	MD02G1094600.v1.1
prunus_persica	Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1 Prupe.7G196400_v2.0.a1
pyrus_communis	pycom02g07480
rosa_chinensis	RchiOBHm_Chr2g0095381
rosa_laevigata	RLG00000016560
rosa_multiflora	Rmu_co8503843.1_g000001 Rmu_ssc0000183.1_g000039
rosa_roxburghii	Rroxscaffold_2G00146420
rosa_rugosa	Rorug02G0050200 Rorug02G0050200 Rorug02G0050300
rosa_samantha	Rh2AG098400 Rh2AG098500 Rh2BG099600 Rh2BG099700 Rh2CG101600 Rh2CG101700 Rh2DG099200 Rh2DG099300
rosa_wichuraiana	Rw2G007430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	137
AccB7I	CCANNNNNTGG	1 cut(s)	169
AclI	AACGTT	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	47, 125
AfaI	GTAC	2 cut(s)	59, 243
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	109, 266, 398
AjnI	CCWGG	2 cut(s)	60, 168
AjuI	GAANNNNNNNTTGG	3 cut(s)	37, 57, 89
AluBI	AGCT	6 cut(s)	8, 83, 116, 203, 308, 433
AluI	AGCT	6 cut(s)	8, 83, 116, 203, 308, 433
Alw21I	GWGCWC	1 cut(s)	435
AlwNI	CAGNNNCTG	1 cut(s)	100
ApeKI	GCWGC	5 cut(s)	80, 194, 197, 200, 519
ApoI	RAATTY	2 cut(s)	47, 125
AspLEI	GCGC	1 cut(s)	194
AsuHPI	GGTGA	1 cut(s)	371
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	5 cut(s)	92, 181, 184, 212, 531
BciT130I	CCWGG	2 cut(s)	62, 170
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	195
BfuAI	ACCTGC	1 cut(s)	137
BisI	GCNGC	5 cut(s)	81, 195, 198, 201, 520
BlsI	GCNGC	5 cut(s)	82, 196, 199, 202, 521
Bme1390I	CCNGG	2 cut(s)	62, 170
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	2 cut(s)	62, 170
BmrI	ACTGGG	1 cut(s)	495
BmuI	ACTGGG	1 cut(s)	495
Bpu10I	CCTNAGC	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	187
BsaXI	ACNNNNNCTCC	1 cut(s)	517
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	490
BseBI	CCWGG	2 cut(s)	62, 170
BseDI	CCNNGG	1 cut(s)	187
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	2 cut(s)	107, 342
BseNI	ACTGG	1 cut(s)	490
BseXI	GCAGC	5 cut(s)	92, 181, 184, 212, 531
BseYI	CCCAGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	399
BsiHKAI	GWGCWC	1 cut(s)	435
BslFI	GGGAC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	1 cut(s)	506
BspCNI	CTCAG	2 cut(s)	106, 343
BspLI	GGNNCC	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	202
BspMI	ACCTGC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	1 cut(s)	506
Bst2UI	CCWGG	2 cut(s)	62, 170
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	2 cut(s)	324, 329
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstDEI	CTNAG	4 cut(s)	93, 304, 351, 462
BstDSI	CCRYGG	1 cut(s)	187
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	1 cut(s)	509
BstMBI	GATC	1 cut(s)	506
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 413
BstNI	CCWGG	2 cut(s)	62, 170
BstSCI	CCNGG	2 cut(s)	60, 168
BstSFI	CTRYAG	1 cut(s)	198
BstV1I	GCAGC	5 cut(s)	92, 181, 184, 212, 531
BtgI	CCRYGG	1 cut(s)	187
BveI	ACCTGC	1 cut(s)	137
CaiI	CAGNNNCTG	1 cut(s)	100
CfoI	GCGC	1 cut(s)	194
Csp6I	GTAC	2 cut(s)	58, 242
CviAII	CATG	1 cut(s)	229
CviQI	GTAC	2 cut(s)	58, 242
DdeI	CTNAG	4 cut(s)	93, 304, 351, 462
DpnI	GATC	1 cut(s)	508
DpnII	GATC	1 cut(s)	506
Eam1104I	CTCTTC	2 cut(s)	324, 329
EarI	CTCTTC	2 cut(s)	324, 329
Ecl136II	GAGCTC	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	435
Eco32I	GATATC	1 cut(s)	220
Eco53kI	GAGCTC	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	60, 168
EcoRV	GATATC	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	435
FaeI	CATG	1 cut(s)	232
FaiI	YATR	9 cut(s)	122, 134, 136, 165, 216, 230, 369, 441, 544
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	1 cut(s)	228
Fnu4HI	GCNGC	5 cut(s)	81, 195, 198, 201, 520
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	5 cut(s)	81, 195, 198, 201, 520
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	5 cut(s)	81, 195, 198, 201, 520
GsaI	CCCAGC	1 cut(s)	12
HaeII	RGCGCY	1 cut(s)	195
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	232
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	2 cut(s)	65, 233
HphI	GGTGA	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	352, 483
Hpy188III	TCNNGA	2 cut(s)	152, 395
HpyAV	CCTTC	2 cut(s)	350, 483
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	5 cut(s)	200, 271, 407, 416, 499
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 413
HpyF3I	CTNAG	4 cut(s)	93, 304, 351, 462
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	1 cut(s)	232
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	506
LmnI	GCTCC	3 cut(s)	5, 77, 178
Lsp1109I	GCAGC	5 cut(s)	92, 181, 184, 212, 531
MaeII	ACGT	1 cut(s)	157
MaeIII	GTNAC	2 cut(s)	37, 158
MalI	GATC	1 cut(s)	508
MboI	GATC	1 cut(s)	506
MboII	GAAGA	2 cut(s)	341, 346
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	5 cut(s)	47, 125, 266, 455, 494
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	311
MnlI	CCTC	1 cut(s)	346
MseI	TTAA	1 cut(s)	293
MslI	CAYNNNNRTG	1 cut(s)	227
MspA1I	CMGCKG	1 cut(s)	203
MspR9I	CCNGG	2 cut(s)	62, 170
MvaI	CCWGG	2 cut(s)	62, 170
MwoI	GCNNNNNNNGC	2 cut(s)	200, 413
NdeII	GATC	1 cut(s)	506
NlaIII	CATG	1 cut(s)	232
NlaIV	GGNNCC	1 cut(s)	174
NmuCI	GTSAC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	65
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	5 cut(s)	82, 196, 199, 202, 521
PleI	GAGTC	1 cut(s)	241
PpsI	GAGTC	1 cut(s)	241
Psp124BI	GAGCTC	1 cut(s)	435
Psp1406I	AACGTT	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	60, 168
PspFI	CCCAGC	1 cut(s)	8
PspGI	CCWGG	2 cut(s)	60, 168
PspN4I	GGNNCC	1 cut(s)	174
PstI	CTGCAG	1 cut(s)	202
PstNI	CAGNNNCTG	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	2 cut(s)	59, 243
RsaNI	GTAC	2 cut(s)	58, 242
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	5 cut(s)	81, 195, 198, 201, 520
Sau3AI	GATC	1 cut(s)	506
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	2 cut(s)	62, 170
SduI	GDGCHC	1 cut(s)	435
SfcI	CTRYAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	227
Sse9I	AATT	5 cut(s)	47, 125, 266, 455, 494
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	2 cut(s)	60, 168
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	1 cut(s)	160
TasI	AATT	5 cut(s)	47, 125, 266, 455, 494
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TseFI	GTSAC	1 cut(s)	37
TseI	GCWGC	5 cut(s)	80, 194, 197, 200, 519
Tsp45I	GTSAC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	126, 456
Van91I	CCANNNNNTGG	1 cut(s)	169
XapI	RAATTY	2 cut(s)	47, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.