Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0017929

Physical Location & Seq

Genomic Coordinates Forward (+)

8801446 .. 8802572

Gene Structure 1127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGACTCATCATGCTATGATTTCTATGCATATATGCACTTTTGGTGGGATGCACAGGGACTCATCTTTGCGATGTTCCTCTCCCTCCTCCCCAAAATATCGATAAAGTTATTGAATTTGTTATGTGTTTCAGGGAAATGCAAAGAGGCACTTGACATTTTCGGTAAAATGTCAGACAAATTGGGCAAAGCAGGAGACACATGGACAATGAACCATGTCCTTTGGTTTATGAAAGAAAATCGCCTTACCCTTCGTTACCCTGTATTTCTAGAGGCTGTTAGAACTTTCAAAATTGCTGGCGAGAGTGATTCCCTCCTCAGGCAAGTTCAACCTCACTTTTCCGTCGACTCTGGCAATCAGGAGGAAAGTGAGTTTAGGCCAACTGCTGCTGATGCTCTTGTGACAATTGATGAAGGGCTTGTATTGATTCTTTTGAAAAAAGAAAATCTCGTTGCCATAGACCACTTGATTGCTGGAAATGGAGATAAGAATATACAATTGGATTGTGCTATCACCAAACCATCATTGAGATCAAAGTCATTTCTAAAAGTGGTGGAGATTGTTGCAGAGATGATTAGGGCTGGATGTTCTCTTGGAATATACTTAAGTGCACTTCTGATACATAGGCTCGGGCGTTGCACTGCAACTTACACTGCATTGATTGGGGCTTACTTCTCTGCTGGGAGTGCTGATAAAGGGCTTCAAAACTTTGAAGCGATGCGAGGGAAAGGATTTCGTCCCTTTTTGGGCACATACATTGTGCTGTTAACTGGTCTCCGAAAGTGCAGTAGAGTTCATGAAGCTGAAATGAATAGGAAGGAAAAGAAGAGTCTGCAGGCAGATGGTGAGTTTCAGAATGCTGTCCCGATCGACCAAAAGATTTGTGATTTTCTGTTTGCTGGGGATCTTGCGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

306

Amino Acids

34.04

Weight (kDa)

8.05

Isoelectric Point (pI)

28.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	213 - 260	2.1e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01360 AT2G01390
fragaria_vesca	FvH4_7g21510
malus_domestica	MD00G1058400.v1.1 MD02G1154900.v1.1 MD15G1269300.v1.1
prunus_persica	Prupe.7G148400_v2.0.a1 Prupe.7G148400_v2.0.a1
pyrus_communis	pycom02g12250 pycom02g12260 pycom15g23370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	345
AclWI	GGATC	1 cut(s)	912
AcsI	RAATTY	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	318, 746
AflII	CTTAAG	1 cut(s)	604
AgsI	TTSAA	6 cut(s)	115, 289, 329, 436, 704, 713
AjuI	GAANNNNNNNTTGG	2 cut(s)	482, 514
AluBI	AGCT	1 cut(s)	803
AluI	AGCT	1 cut(s)	803
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	2 cut(s)	189, 779
Alw44I	GTGCAC	1 cut(s)	609
AlwI	GGATC	1 cut(s)	912
Ama87I	CYCGRG	1 cut(s)	629
AoxI	GGCC	1 cut(s)	377
ApaLI	GTGCAC	1 cut(s)	609
ApeKI	GCWGC	1 cut(s)	386
ApoI	RAATTY	1 cut(s)	115
AsuHPI	GGTGA	2 cut(s)	505, 857
AvaI	CYCGRG	1 cut(s)	629
AxyI	CCTNAGG	1 cut(s)	317
BaeGI	GKGCMC	2 cut(s)	613, 752
Bbv12I	GWGCWC	1 cut(s)	613
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	2 cut(s)	529, 836
BcoDI	GTCTC	2 cut(s)	189, 779
BfaI	CTAG	1 cut(s)	269
BfmI	CTRYAG	1 cut(s)	833
BfrI	CTTAAG	1 cut(s)	604
BisI	GCNGC	1 cut(s)	387
BlsI	GCNGC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	629
BmsI	GCATC	3 cut(s)	40, 382, 708
Bsa29I	ATCGAT	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	779
Bsc4I	CCNNNNNNNGG	2 cut(s)	318, 746
Bse1I	ACTGG	1 cut(s)	775
Bse21I	CCTNAGG	1 cut(s)	317
BseCI	ATCGAT	1 cut(s)	101
BseGI	GGATG	2 cut(s)	55, 590
BseLI	CCNNNNNNNGG	2 cut(s)	318, 746
BseMII	CTCAG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	2 cut(s)	77, 305
BseSI	GKGCMC	2 cut(s)	613, 752
BseXI	GCAGC	1 cut(s)	373
BseYI	CCCAGC	2 cut(s)	680, 899
BsgI	GTGCAG	1 cut(s)	805
Bsh1285I	CGRYCG	1 cut(s)	870
BshFI	GGCC	1 cut(s)	379
BshVI	ATCGAT	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	870
BsiHKAI	GWGCWC	1 cut(s)	613
BsiHKCI	CYCGRG	1 cut(s)	629
BslFI	GGGAC	3 cut(s)	72, 723, 848
BslI	CCNNNNNNNGG	2 cut(s)	318, 746
BsmAI	GTCTC	2 cut(s)	189, 779
BsmFI	GGGAC	3 cut(s)	72, 723, 848
BsmI	GAATGC	1 cut(s)	862
BsnI	GGCC	1 cut(s)	379
Bso31I	GGTCTC	1 cut(s)	779
BsoBI	CYCGRG	1 cut(s)	629
Bsp1286I	GDGCHC	2 cut(s)	613, 752
Bsp143I	GATC	3 cut(s)	530, 867, 904
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	330
BspDI	ATCGAT	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	796
BspMAI	CTGCAG	1 cut(s)	837
BspPI	GGATC	1 cut(s)	912
BspTI	CTTAAG	1 cut(s)	604
BspTNI	GGTCTC	1 cut(s)	779
BsrI	ACTGG	1 cut(s)	775
BssMI	GATC	3 cut(s)	530, 867, 904
Bst6I	CTCTTC	1 cut(s)	821
BstAFI	CTTAAG	1 cut(s)	604
BstC8I	GCNNGC	2 cut(s)	298, 837
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	2 cut(s)	55, 590
BstKTI	GATC	3 cut(s)	533, 870, 907
BstMAI	GTCTC	2 cut(s)	189, 779
BstMBI	GATC	3 cut(s)	530, 867, 904
BstMCI	CGRYCG	1 cut(s)	870
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 686
BstSFI	CTRYAG	1 cut(s)	833
BstSLI	GKGCMC	2 cut(s)	613, 752
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	904
Bsu15I	ATCGAT	1 cut(s)	101
Bsu36I	CCTNAGG	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	379
BsuTUI	ATCGAT	1 cut(s)	101
BtgZI	GCGATG	2 cut(s)	86, 731
BtsCI	GGATG	2 cut(s)	55, 590
BtsI	GCAGTG	2 cut(s)	639, 651
BtsIMutI	CAGTG	2 cut(s)	639, 651
Cac8I	GCNNGC	2 cut(s)	298, 837
CciI	TCATGA	1 cut(s)	796
ClaI	ATCGAT	1 cut(s)	101
CseI	GACGC	1 cut(s)	900
CviAII	CATG	4 cut(s)	12, 201, 215, 797
CviJI	RGCY	8 cut(s)	275, 379, 418, 581, 628, 668, 700, 803
CviKI_1	RGCY	8 cut(s)	275, 379, 418, 581, 628, 668, 700, 803
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	3 cut(s)	532, 869, 906
DpnII	GATC	3 cut(s)	530, 867, 904
Eam1104I	CTCTTC	1 cut(s)	821
EarI	CTCTTC	1 cut(s)	821
Eco31I	GGTCTC	1 cut(s)	779
Eco81I	CCTNAGG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	629
EcoT22I	ATGCAT	1 cut(s)	31
FaeI	CATG	4 cut(s)	15, 204, 218, 800
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	3 cut(s)	72, 723, 848
FatI	CATG	4 cut(s)	11, 200, 214, 796
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	1 cut(s)	387
FokI	GGATG	2 cut(s)	62, 597
Fsp4HI	GCNGC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	269
GluI	GCNGC	1 cut(s)	387
GsaI	CCCAGC	2 cut(s)	684, 903
HaeIII	GGCC	1 cut(s)	379
HgaI	GACGC	1 cut(s)	900
Hin1II	CATG	4 cut(s)	15, 204, 218, 800
HincII	GTYRAC	2 cut(s)	346, 768
HindII	GTYRAC	2 cut(s)	346, 768
HinfI	GANTC	6 cut(s)	5, 60, 308, 347, 427, 829
HpaI	GTTAAC	1 cut(s)	768
HphI	GGTGA	2 cut(s)	505, 857
Hpy166II	GTNNAC	3 cut(s)	346, 611, 768
Hpy188I	TCNGA	4 cut(s)	175, 618, 779, 855
Hpy188III	TCNNGA	5 cut(s)	269, 359, 797, 865, 915
Hpy8I	GTNNAC	3 cut(s)	346, 611, 768
Hpy99I	CGWCG	1 cut(s)	347
HpyAV	CCTTC	3 cut(s)	260, 407, 811
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 686
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	4 cut(s)	15, 204, 218, 800
KspAI	GTTAAC	1 cut(s)	768
Kzo9I	GATC	3 cut(s)	530, 867, 904
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	3 cut(s)	40, 382, 708
MaeI	CTAG	1 cut(s)	269
MaeIII	GTNAC	2 cut(s)	254, 400
MalI	GATC	3 cut(s)	532, 869, 906
MboI	GATC	3 cut(s)	530, 867, 904
MboII	GAAGA	1 cut(s)	838
MfeI	CAATTG	2 cut(s)	405, 497
MflI	RGATCY	1 cut(s)	904
MhlI	GDGCHC	2 cut(s)	613, 752
MluCI	AATT	5 cut(s)	115, 179, 291, 405, 497
MlyI	GAGTC	3 cut(s)	54, 341, 838
Mph1103I	ATGCAT	1 cut(s)	31
MseI	TTAA	2 cut(s)	605, 767
MspCI	CTTAAG	1 cut(s)	604
MunI	CAATTG	2 cut(s)	405, 497
Mva1269I	GAATGC	1 cut(s)	862
MwoI	GCNNNNNNNGC	2 cut(s)	392, 686
NdeII	GATC	3 cut(s)	530, 867, 904
NlaIII	CATG	4 cut(s)	15, 204, 218, 800
NmuCI	GTSAC	1 cut(s)	400
NsiI	ATGCAT	1 cut(s)	31
PagI	TCATGA	1 cut(s)	796
PctI	GAATGC	1 cut(s)	862
PfeI	GAWTC	2 cut(s)	308, 427
PkrI	GCNGC	1 cut(s)	388
Ple19I	CGATCG	1 cut(s)	870
PleI	GAGTC	3 cut(s)	54, 341, 837
PpsI	GAGTC	3 cut(s)	54, 341, 837
PspFI	CCCAGC	2 cut(s)	680, 899
PstI	CTGCAG	1 cut(s)	837
PsuI	RGATCY	1 cut(s)	904
PvuI	CGATCG	1 cut(s)	870
SalI	GTCGAC	1 cut(s)	344
SaqAI	TTAA	2 cut(s)	605, 767
SatI	GCNGC	1 cut(s)	387
Sau3AI	GATC	3 cut(s)	530, 867, 904
SchI	GAGTC	3 cut(s)	54, 341, 838
SduI	GDGCHC	2 cut(s)	613, 752
SetI	ASST	2 cut(s)	334, 805
SfaNI	GCATC	3 cut(s)	40, 382, 708
SfcI	CTRYAG	1 cut(s)	833
SmlI	CTYRAG	1 cut(s)	604
SmoI	CTYRAG	1 cut(s)	604
Sse9I	AATT	5 cut(s)	115, 179, 291, 405, 497
SspMI	CTAG	1 cut(s)	269
TaqI	TCGA	3 cut(s)	101, 345, 870
TasI	AATT	5 cut(s)	115, 179, 291, 405, 497
TfiI	GAWTC	2 cut(s)	308, 427
Tru1I	TTAA	2 cut(s)	605, 767
Tru9I	TTAA	2 cut(s)	605, 767
TscAI	CASTG	2 cut(s)	646, 658
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	6 cut(s)	224, 245, 426, 785, 813, 824
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	2 cut(s)	646, 658
Vha464I	CTTAAG	1 cut(s)	604
VneI	GTGCAC	1 cut(s)	609
XapI	RAATTY	1 cut(s)	115
XbaI	TCTAGA	1 cut(s)	268
XcmI	CCANNNNNNNNNTGG	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	345
XspI	CTAG	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.