Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0013223

Physical Location & Seq

Genomic Coordinates Reverse (-)

9060852 .. 9062143

Gene Structure 1292 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGCAGCCTCCCTCCAAGCAGCTGCTACGCTCATGCAGCCGACCAAGGTCGGCGTGTCGGCGAGGACCAGTGTGCAACTGAGGTCCTCTCAGAGTATCTCCAAGGCCTTTGGCTTGGAGCCATCTGCTTCTGCTAGGCTCACTTGCTCTTTGCAAGCTGATCTCAAGGACTTGGCTCACAAGTGCCTTGATGCATCCAAGATTGCTGGATTTGCTCTTGCTACTTCCGCTCTCGTCGTTTCGGGAGCAGGTGCAGAGGGAGCTCCAAAGAGGTTGACCTTCGATGAAATCCAGAGCAAGACCTACTTGGAAGTGAAGGGAACAGGAACTGCTAACCAATGCCCAACCATCGACGGAGGATCGATCGAAGCATTTGCCTTCAAACCCGGCAAGTACACTGCCAAGAAGTTCTGCCTAGAGCCAACATCCTTCACTGTTAAGGCAGAGAGTGTGAGCAAGAACGCTCCACCAGAGTTCCAAAACACCAAGCTCATGACCCGCCTAACCTACACCCTCGATGAGATCGAAGGACCTTTCGAAGTTGCTCCAGATGGCACCATCAAGTTCGAAGAGAAAGACGGCATTGACTACGCTGCAGTGACAGTCCAGCTCCCGGGAGGCGAGCGCGTGCCCTTCCTCTTTACCATCAAGCAGCTGGTAGCCTCTGGCAAGCCCGAAAACTTCACAGGAGAGTTTCTAGTACCATCATACCGTGGATCCTCTTTCTTGGACCCCAAGGGAAGAGGATGGATCCACTGGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko00195 ko01100 map00195 map01100

Pfam Domains

Protein Families

MSP

Protein Analysis

255

Amino Acids

27.14

Weight (kDa)

8.26

Isoelectric Point (pI)

35.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MSP	PF01716	99 - 250	3.5e-60	Manganese-stabilising protein / photosystem II polypeptide

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013223)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50820 AT5G66570
fragaria_vesca	FvH4_1g14430
malus_domestica	MD02G1157800.v1.1 MD15G1272500.v1.1
prunus_persica	Prupe.7G145900_v2.0.a1
pyrus_communis	pycom02g12470 pycom15g23610
rosa_chinensis	RchiOBHm_Chr2g0103161
rosa_laevigata	RLG00000017214
rosa_multiflora	Rmu_sc0000388.1_g000004
rosa_roxburghii	Rroxscaffold_2G00139880
rosa_rugosa	Rorug02G0112200
rosa_samantha	Rh2AG161000 Rh2BG167700 Rh2CG168000 Rh2DG166600
rosa_wichuraiana	Rw2G012630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	239
Acc36I	ACCTGC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	554
AccBSI	CCGCTC	1 cut(s)	230
AccII	CGCG	1 cut(s)	627
AciI	CCGC	2 cut(s)	228, 499
AclWI	GGATC	5 cut(s)	367, 711, 724, 745, 758
AfaI	GTAC	2 cut(s)	395, 702
AfiI	CCNNNNNNNGG	1 cut(s)	613
AgsI	TTSAA	1 cut(s)	382
AluBI	AGCT	6 cut(s)	23, 158, 263, 490, 610, 655
AluI	AGCT	6 cut(s)	23, 158, 263, 490, 610, 655
Alw21I	GWGCWC	1 cut(s)	265
AlwI	GGATC	5 cut(s)	367, 711, 724, 745, 758
AlwNI	CAGNNNCTG	1 cut(s)	329
Ama87I	CYCGRG	1 cut(s)	613
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	6 cut(s)	5, 20, 23, 37, 593, 652
AspLEI	GCGC	1 cut(s)	627
AspS9I	GGNCC	4 cut(s)	66, 84, 530, 730
AsuC2I	CCSGG	3 cut(s)	387, 614, 615
AsuII	TTCGAA	2 cut(s)	537, 567
AvaI	CYCGRG	1 cut(s)	613
AvaII	GGWCC	4 cut(s)	66, 84, 530, 730
BaeGI	GKGCMC	1 cut(s)	633
BamHI	GGATCC	2 cut(s)	716, 750
BanI	GGYRCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	265
BbvI	GCAGC	6 cut(s)	10, 17, 32, 49, 580, 664
BccI	CCATC	7 cut(s)	130, 356, 545, 566, 653, 712, 741
BceAI	ACGGC	1 cut(s)	595
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BcnI	CCSGG	3 cut(s)	387, 614, 615
BfaI	CTAG	3 cut(s)	135, 416, 698
BfmI	CTRYAG	1 cut(s)	594
BfuAI	ACCTGC	1 cut(s)	239
BisI	GCNGC	6 cut(s)	6, 21, 24, 38, 594, 653
BlsI	GCNGC	6 cut(s)	7, 22, 25, 39, 595, 654
Bme1390I	CCNGG	3 cut(s)	387, 614, 615
Bme18I	GGWCC	4 cut(s)	66, 84, 530, 730
BmeT110I	CYCGRG	1 cut(s)	613
BmgT120I	GGNCC	4 cut(s)	66, 84, 530, 730
BmiI	GGNNCC	5 cut(s)	120, 556, 718, 732, 752
BmrFI	CCNGG	3 cut(s)	387, 614, 615
BmsI	GCATC	2 cut(s)	181, 203
BoxI	GACNNNNGTC	1 cut(s)	47
BplI	GAGNNNNNCTC	2 cut(s)	73, 105
BpmI	CTGGAG	1 cut(s)	531
Bpu14I	TTCGAA	2 cut(s)	537, 567
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	3 cut(s)	387, 614, 615
Bsa29I	ATCGAT	1 cut(s)	362
BsaJI	CCNNGG	5 cut(s)	45, 102, 613, 712, 735
Bsc4I	CCNNNNNNNGG	1 cut(s)	613
Bse1I	ACTGG	2 cut(s)	69, 761
BseCI	ATCGAT	1 cut(s)	362
BseDI	CCNNGG	5 cut(s)	45, 102, 613, 712, 735
BseGI	GGATG	3 cut(s)	194, 425, 752
BseLI	CCNNNNNNNGG	1 cut(s)	613
BseMII	CTCAG	2 cut(s)	71, 104
BseNI	ACTGG	2 cut(s)	69, 761
BseSI	GKGCMC	1 cut(s)	633
BseXI	GCAGC	6 cut(s)	10, 17, 32, 49, 580, 664
BsgI	GTGCAG	1 cut(s)	273
Bsh1236I	CGCG	1 cut(s)	627
Bsh1285I	CGRYCG	1 cut(s)	366
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	554
BshVI	ATCGAT	1 cut(s)	362
BsiEI	CGRYCG	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	265
BsiHKCI	CYCGRG	1 cut(s)	613
BsiSI	CCGG	2 cut(s)	387, 614
BslI	CCNNNNNNNGG	1 cut(s)	613
BsnI	GGCC	1 cut(s)	107
BsoBI	CYCGRG	1 cut(s)	613
Bsp119I	TTCGAA	2 cut(s)	537, 567
Bsp1286I	GDGCHC	2 cut(s)	265, 633
Bsp143I	GATC	6 cut(s)	160, 359, 363, 522, 716, 750
BspACI	CCGC	2 cut(s)	228, 499
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	72, 103
BspDI	ATCGAT	1 cut(s)	362
BspFNI	CGCG	1 cut(s)	627
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	5 cut(s)	120, 556, 718, 732, 752
BspMAI	CTGCAG	1 cut(s)	598
BspMI	ACCTGC	1 cut(s)	239
BspPI	GGATC	5 cut(s)	367, 711, 724, 745, 758
BspT104I	TTCGAA	2 cut(s)	537, 567
BspT107I	GGYRCC	1 cut(s)	554
BsrBI	CCGCTC	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	69, 761
BssECI	CCNNGG	5 cut(s)	45, 102, 613, 712, 735
BssMI	GATC	6 cut(s)	160, 359, 363, 522, 716, 750
BssT1I	CCWWGG	3 cut(s)	45, 102, 735
Bst4CI	ACNGT	3 cut(s)	436, 604, 713
Bst6I	CTCTTC	2 cut(s)	564, 736
BstBI	TTCGAA	2 cut(s)	537, 567
BstC8I	GCNNGC	4 cut(s)	156, 623, 629, 671
BstDEI	CTNAG	2 cut(s)	80, 90
BstDSI	CCRYGG	1 cut(s)	712
BstF5I	GGATG	3 cut(s)	194, 425, 752
BstFNI	CGCG	1 cut(s)	627
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	6 cut(s)	163, 362, 366, 525, 719, 753
BstMBI	GATC	6 cut(s)	160, 359, 363, 522, 716, 750
BstMCI	CGRYCG	1 cut(s)	366
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 212, 227, 260
BstPAI	GACNNNNGTC	1 cut(s)	47
BstSCI	CCNGG	3 cut(s)	385, 612, 613
BstSFI	CTRYAG	1 cut(s)	594
BstSLI	GKGCMC	1 cut(s)	633
BstUI	CGCG	1 cut(s)	627
BstV1I	GCAGC	6 cut(s)	10, 17, 32, 49, 580, 664
BstX2I	RGATCY	2 cut(s)	716, 750
BstYI	RGATCY	2 cut(s)	716, 750
Bsu15I	ATCGAT	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	107
BsuTUI	ATCGAT	1 cut(s)	362
BtgI	CCRYGG	1 cut(s)	712
BtsCI	GGATG	3 cut(s)	194, 425, 752
BtsI	GCAGTG	2 cut(s)	396, 603
BtsIMutI	CAGTG	5 cut(s)	76, 396, 432, 603, 754
BveI	ACCTGC	1 cut(s)	239
Cac8I	GCNNGC	4 cut(s)	156, 623, 629, 671
CaiI	CAGNNNCTG	1 cut(s)	329
CciI	TCATGA	1 cut(s)	492
CfoI	GCGC	1 cut(s)	627
Cfr13I	GGNCC	4 cut(s)	66, 84, 530, 730
Cfr9I	CCCGGG	1 cut(s)	613
ClaI	ATCGAT	1 cut(s)	362
Csp6I	GTAC	2 cut(s)	394, 701
CviAII	CATG	2 cut(s)	34, 493
CviQI	GTAC	2 cut(s)	394, 701
DdeI	CTNAG	2 cut(s)	80, 90
DpnI	GATC	6 cut(s)	162, 361, 365, 524, 718, 752
DpnII	GATC	6 cut(s)	160, 359, 363, 522, 716, 750
Eam1104I	CTCTTC	2 cut(s)	564, 736
EarI	CTCTTC	2 cut(s)	564, 736
Ecl136II	GAGCTC	1 cut(s)	263
Eco130I	CCWWGG	3 cut(s)	45, 102, 735
Eco147I	AGGCCT	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	265
Eco47I	GGWCC	4 cut(s)	66, 84, 530, 730
Eco53kI	GAGCTC	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	613
EcoICRI	GAGCTC	1 cut(s)	263
EcoO109I	RGGNCCY	2 cut(s)	84, 530
EcoT14I	CCWWGG	3 cut(s)	45, 102, 735
EcoT22I	ATGCAT	1 cut(s)	196
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	3 cut(s)	45, 102, 735
FaeI	CATG	2 cut(s)	37, 496
FaiI	YATR	4 cut(s)	35, 494, 709, 763
FalI	AAGNNNNNCTT	2 cut(s)	290, 322
FatI	CATG	2 cut(s)	33, 492
FauI	CCCGC	1 cut(s)	506
Fnu4HI	GCNGC	6 cut(s)	6, 21, 24, 38, 594, 653
FokI	GGATG	3 cut(s)	181, 412, 759
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	6 cut(s)	6, 21, 24, 38, 594, 653
FspBI	CTAG	3 cut(s)	135, 416, 698
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	6 cut(s)	6, 21, 24, 38, 594, 653
GsuI	CTGGAG	1 cut(s)	531
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	2 cut(s)	387, 614
HhaI	GCGC	1 cut(s)	627
Hin1II	CATG	2 cut(s)	37, 496
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HpaII	CCGG	2 cut(s)	387, 614
Hpy166II	GTNNAC	2 cut(s)	276, 396
Hpy188I	TCNGA	1 cut(s)	93
Hpy188III	TCNNGA	4 cut(s)	243, 292, 493, 548
Hpy8I	GTNNAC	2 cut(s)	276, 396
Hpy99I	CGWCG	2 cut(s)	239, 356
HpyAV	CCTTC	6 cut(s)	289, 310, 388, 439, 521, 643
HpyCH4III	ACNGT	3 cut(s)	436, 604, 713
HpyCH4V	TGCA	6 cut(s)	37, 76, 154, 194, 254, 596
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 212, 227, 260
HpyF3I	CTNAG	2 cut(s)	80, 90
Hsp92II	CATG	2 cut(s)	37, 496
HspAI	GCGC	1 cut(s)	625
Kzo9I	GATC	6 cut(s)	160, 359, 363, 522, 716, 750
LmnI	GCTCC	7 cut(s)	118, 245, 260, 268, 469, 550, 615
Lsp1109I	GCAGC	6 cut(s)	10, 17, 32, 49, 580, 664
LweI	GCATC	2 cut(s)	181, 203
MaeI	CTAG	3 cut(s)	135, 416, 698
MaeIII	GTNAC	1 cut(s)	598
MalI	GATC	6 cut(s)	162, 361, 365, 524, 718, 752
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	6 cut(s)	160, 359, 363, 522, 716, 750
MboII	GAAGA	2 cut(s)	581, 753
MflI	RGATCY	2 cut(s)	716, 750
MhlI	GDGCHC	2 cut(s)	265, 633
Mph1103I	ATGCAT	1 cut(s)	196
MseI	TTAA	1 cut(s)	438
MspA1I	CMGCKG	2 cut(s)	23, 655
MspI	CCGG	2 cut(s)	387, 614
MspR9I	CCNGG	3 cut(s)	387, 614, 615
MvnI	CGCG	1 cut(s)	627
MwoI	GCNNNNNNNGC	4 cut(s)	37, 212, 227, 260
NciI	CCSGG	3 cut(s)	387, 614, 615
NdeII	GATC	6 cut(s)	160, 359, 363, 522, 716, 750
NlaIII	CATG	2 cut(s)	37, 496
NlaIV	GGNNCC	5 cut(s)	120, 556, 718, 732, 752
NmuCI	GTSAC	1 cut(s)	598
NsiI	ATGCAT	1 cut(s)	196
NspV	TTCGAA	2 cut(s)	537, 567
PagI	TCATGA	1 cut(s)	492
PaqCI	CACCTGC	1 cut(s)	239
PceI	AGGCCT	1 cut(s)	107
PcsI	WCGNNNNNNNCGW	1 cut(s)	522
PkrI	GCNGC	6 cut(s)	7, 22, 25, 39, 595, 654
Ple19I	CGATCG	1 cut(s)	366
PpuMI	RGGWCCY	2 cut(s)	84, 530
PshAI	GACNNNNGTC	1 cut(s)	47
Psp124BI	GAGCTC	1 cut(s)	265
Psp5II	RGGWCCY	2 cut(s)	84, 530
PspN4I	GGNNCC	5 cut(s)	120, 556, 718, 732, 752
PspPI	GGNCC	4 cut(s)	66, 84, 530, 730
PspPPI	RGGWCCY	2 cut(s)	84, 530
PstI	CTGCAG	1 cut(s)	598
PstNI	CAGNNNCTG	1 cut(s)	329
PsuI	RGATCY	2 cut(s)	716, 750
PvuI	CGATCG	1 cut(s)	366
PvuII	CAGCTG	2 cut(s)	23, 655
RsaI	GTAC	2 cut(s)	395, 702
RsaNI	GTAC	2 cut(s)	394, 701
SacI	GAGCTC	1 cut(s)	265
SaqAI	TTAA	1 cut(s)	438
SatI	GCNGC	6 cut(s)	6, 21, 24, 38, 594, 653
Sau3AI	GATC	6 cut(s)	160, 359, 363, 522, 716, 750
Sau96I	GGNCC	4 cut(s)	66, 84, 530, 730
ScrFI	CCNGG	3 cut(s)	387, 614, 615
SduI	GDGCHC	2 cut(s)	265, 633
SfaNI	GCATC	2 cut(s)	181, 203
SfcI	CTRYAG	1 cut(s)	594
SfuI	TTCGAA	2 cut(s)	537, 567
SinI	GGWCC	4 cut(s)	66, 84, 530, 730
SmaI	CCCGGG	1 cut(s)	615
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
SseBI	AGGCCT	1 cut(s)	107
SsiI	CCGC	2 cut(s)	228, 499
SspMI	CTAG	3 cut(s)	135, 416, 698
SstI	GAGCTC	1 cut(s)	265
StuI	AGGCCT	1 cut(s)	107
StyD4I	CCNGG	3 cut(s)	385, 612, 613
StyI	CCWWGG	3 cut(s)	45, 102, 735
TaaI	ACNGT	3 cut(s)	436, 604, 713
TaqI	TCGA	8 cut(s)	282, 351, 362, 366, 516, 525, 537, 567
TatI	WGTACW	1 cut(s)	393
Tru1I	TTAA	1 cut(s)	438
Tru9I	TTAA	1 cut(s)	438
TscAI	CASTG	5 cut(s)	76, 403, 439, 603, 761
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	6 cut(s)	5, 20, 23, 37, 593, 652
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	1 cut(s)	300
TspGWI	ACGGA	1 cut(s)	369
TspMI	CCCGGG	1 cut(s)	613
TspRI	CASTG	5 cut(s)	76, 403, 439, 603, 761
VpaK11BI	GGWCC	4 cut(s)	66, 84, 530, 730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	652
XmaI	CCCGGG	1 cut(s)	613
XspI	CTAG	3 cut(s)	135, 416, 698
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.