Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0017401

Physical Location & Seq

Genomic Coordinates Forward (+)

9684217 .. 9685816

Gene Structure 1600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g13100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGAAACAGGATCGGATTGTTCCTTACATTAAGAGCATTTTTATTTGGGTTTTTTCATACTACTACGTTCTCCTCTTGTCTTCAAATTTTGATGGAAATGATTGCAAGTTAGTTTTCGGATTTTTCGGTGTCGTGTTTTGTTTGAGGGAAGCTGGAATGGCTGGGGGGCTTTTTGCAGGGGCTGCTGTAGGAACATTGTTTACTCTGCTGTATGATGTTGTGAAGGATGTCAAGGACAAGACTATGATGTTTAAGGAGCTCCTCAGAGATCTCAATTCCACACTAGAAGCGTTAAAGCCGCTGATAGATGACTTAGCGAAGTACAAAGCGGTGTTGGATCAATCAAACAAGGAAGTAGAAAAAATTGAGAAACAAATGAAGAATGGGAAAGAGTTAGTTCTCGAGTGCTCCAAGCCTGGCCGGTGGAAACTCTTCAAAAAGTATAAATACACCAACCGACTTCTCAATTTGGATAAGTATCTAAAAAGGTTGTTGACGATACTGGATGGAGATGGTGTTGTGAGGGAGGACTTGGCTGTTTCAAGGGCGACATTTGGTGTTGCGAGGGAGAACTTGGCTGTTTCAAGGGAGTCATTTGGTGTTGCGAGGGCGAACTCGGCCGTTTCAGGGGAGACATTTGGTGTTGCCAGGTTCAAGGAAAATATATTCTTTGTCACTGTTTCGGAACACCCCAACTCAGATGTAGAAAAGCTATATCAACGCATAAAGTCTCAGGAAGCAGGACAAGATCTACTGTCGGTCCTGGATGATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

NB-ARC RPW8

Protein Analysis

259

Amino Acids

29.22

Weight (kDa)

8.76

Isoelectric Point (pI)

26.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017401)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g13100
rosa_chinensis	RchiOBHm_Chr2g0104831
rosa_laevigata	RLG00000017362
rosa_multiflora	Rmu_co8514665.1_g000001 Rmu_sc0003419.1_g000022 Rmu_sc0042080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138740
rosa_rugosa	Rorug02G0123400 Rorug02G0123400
rosa_samantha	Rh2AG173500 Rh2BG181100 Rh2CG178400 Rh2DG179700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	299, 329
AclWI	GGATC	2 cut(s)	18, 345
AcoI	YGGCCR	2 cut(s)	418, 618
AcsI	RAATTY	1 cut(s)	85
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	1 cut(s)	627
AgsI	TTSAA	5 cut(s)	84, 436, 543, 585, 655
AjnI	CCWGG	3 cut(s)	415, 647, 762
AluBI	AGCT	3 cut(s)	152, 259, 712
AluI	AGCT	3 cut(s)	152, 259, 712
Alw21I	GWGCWC	2 cut(s)	261, 410
Alw26I	GTCTC	2 cut(s)	626, 735
AlwI	GGATC	2 cut(s)	18, 345
AlwNI	CAGNNNCTG	1 cut(s)	182
Ama87I	CYCGRG	1 cut(s)	401
AoxI	GGCC	2 cut(s)	418, 618
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	760
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	760
BanII	GRGCYC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	72
Bbv12I	GWGCWC	2 cut(s)	261, 410
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	3 cut(s)	86, 500, 506
BceAI	ACGGC	1 cut(s)	605
BciT130I	CCWGG	3 cut(s)	417, 649, 764
BcoDI	GTCTC	2 cut(s)	626, 735
BfaI	CTAG	1 cut(s)	284
BfmI	CTRYAG	1 cut(s)	186
BglII	AGATCT	2 cut(s)	268, 748
BisI	GCNGC	2 cut(s)	183, 299
BlsI	GCNGC	2 cut(s)	184, 300
Bme1390I	CCNGG	3 cut(s)	417, 649, 764
Bme18I	GGWCC	1 cut(s)	760
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	760
BmrFI	CCNGG	3 cut(s)	417, 649, 764
BpiI	GAAGAC	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	477
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bsc4I	CCNNNNNNNGG	1 cut(s)	627
Bse118I	RCCGGY	1 cut(s)	420
Bse1I	ACTGG	1 cut(s)	507
Bse8I	GATNNNNATC	1 cut(s)	477
BseBI	CCWGG	3 cut(s)	417, 649, 764
BseGI	GGATG	3 cut(s)	232, 511, 772
BseJI	GATNNNNATC	1 cut(s)	477
BseLI	CCNNNNNNNGG	1 cut(s)	627
BseMII	CTCAG	3 cut(s)	277, 711, 746
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	2 cut(s)	62, 251
BseX3I	CGGCCG	1 cut(s)	618
BseXI	GCAGC	1 cut(s)	169
BseYI	CCCAGC	1 cut(s)	161
Bsh1285I	CGRYCG	1 cut(s)	621
BshFI	GGCC	2 cut(s)	420, 620
BsiEI	CGRYCG	1 cut(s)	621
BsiHKAI	GWGCWC	2 cut(s)	261, 410
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	627
BsmAI	GTCTC	2 cut(s)	626, 735
BsnI	GGCC	2 cut(s)	420, 620
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	2 cut(s)	261, 410
Bsp143I	GATC	4 cut(s)	10, 268, 337, 748
BspACI	CCGC	2 cut(s)	299, 329
BspANI	GGCC	2 cut(s)	420, 620
BspCNI	CTCAG	3 cut(s)	276, 710, 745
BspPI	GGATC	2 cut(s)	18, 345
BsrFI	RCCGGY	1 cut(s)	420
BsrI	ACTGG	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	420
BssMI	GATC	4 cut(s)	10, 268, 337, 748
Bst2UI	CCWGG	3 cut(s)	417, 649, 764
Bst4CI	ACNGT	2 cut(s)	679, 756
Bst6I	CTCTTC	1 cut(s)	437
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstDEI	CTNAG	4 cut(s)	263, 313, 697, 732
BstF5I	GGATG	3 cut(s)	232, 511, 772
BstKTI	GATC	4 cut(s)	13, 271, 340, 751
BstMAI	GTCTC	2 cut(s)	626, 735
BstMBI	GATC	4 cut(s)	10, 268, 337, 748
BstMCI	CGRYCG	1 cut(s)	621
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 182, 617
BstNI	CCWGG	3 cut(s)	417, 649, 764
BstSCI	CCNGG	3 cut(s)	415, 647, 762
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	72
BstX2I	RGATCY	2 cut(s)	268, 748
BstYI	RGATCY	2 cut(s)	268, 748
BstZI	CGGCCG	1 cut(s)	618
BsuRI	GGCC	2 cut(s)	420, 620
BtsCI	GGATG	3 cut(s)	232, 511, 772
BtsIMutI	CAGTG	1 cut(s)	675
CaiI	CAGNNNCTG	1 cut(s)	182
Cfr10I	RCCGGY	1 cut(s)	420
Cfr13I	GGNCC	1 cut(s)	760
Csp6I	GTAC	1 cut(s)	322
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	4 cut(s)	263, 313, 697, 732
DpnI	GATC	4 cut(s)	12, 270, 339, 750
DpnII	GATC	4 cut(s)	10, 268, 337, 748
EaeI	YGGCCR	2 cut(s)	418, 618
EagI	CGGCCG	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	437
EarI	CTCTTC	1 cut(s)	437
Ecl136II	GAGCTC	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	760
Eco52I	CGGCCG	1 cut(s)	618
Eco53kI	GAGCTC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	259
EcoRII	CCWGG	3 cut(s)	415, 647, 762
EcoT38I	GRGCYC	1 cut(s)	261
FaiI	YATR	7 cut(s)	58, 213, 245, 444, 665, 715, 725
Fnu4HI	GCNGC	2 cut(s)	183, 299
FokI	GGATG	2 cut(s)	239, 518
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	2 cut(s)	183, 299
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	2 cut(s)	183, 299
GsaI	CCCAGC	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	420, 620
HapII	CCGG	1 cut(s)	421
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HinfI	GANTC	1 cut(s)	590
HpaII	CCGG	1 cut(s)	421
Hpy166II	GTNNAC	2 cut(s)	201, 495
Hpy188I	TCNGA	5 cut(s)	15, 119, 266, 685, 700
Hpy188III	TCNNGA	2 cut(s)	401, 734
Hpy8I	GTNNAC	2 cut(s)	201, 495
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	2 cut(s)	679, 756
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	105, 176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 182, 617
HpyF3I	CTNAG	4 cut(s)	263, 313, 697, 732
HpySE526I	ACGT	1 cut(s)	66
Kzo9I	GATC	4 cut(s)	10, 268, 337, 748
LmnI	GCTCC	3 cut(s)	256, 264, 413
Lsp1109I	GCAGC	1 cut(s)	169
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	4 cut(s)	12, 270, 339, 750
MboI	GATC	4 cut(s)	10, 268, 337, 748
MboII	GAAGA	3 cut(s)	72, 391, 424
MflI	RGATCY	2 cut(s)	268, 748
MhlI	GDGCHC	2 cut(s)	261, 410
MluCI	AATT	4 cut(s)	85, 274, 363, 466
MlyI	GAGTC	1 cut(s)	599
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	7 cut(s)	83, 138, 272, 516, 520, 558, 600
MroXI	GAANNNNTTC	1 cut(s)	431
MseI	TTAA	3 cut(s)	30, 252, 293
MspA1I	CMGCKG	1 cut(s)	301
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	3 cut(s)	417, 649, 764
MvaI	CCWGG	3 cut(s)	417, 649, 764
MwoI	GCNNNNNNNGC	3 cut(s)	158, 182, 617
NdeII	GATC	4 cut(s)	10, 268, 337, 748
NmeAIII	GCCGAG	1 cut(s)	596
NmuCI	GTSAC	1 cut(s)	673
PaeR7I	CTCGAG	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	431
PfoI	TCCNGGA	1 cut(s)	762
PkrI	GCNGC	2 cut(s)	184, 300
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	3 cut(s)	415, 647, 762
PspFI	CCCAGC	1 cut(s)	161
PspGI	CCWGG	3 cut(s)	415, 647, 762
PspPI	GGNCC	1 cut(s)	760
PsrI	GAACNNNNNNTAC	2 cut(s)	184, 216
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	2 cut(s)	268, 748
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	30, 252, 293
SatI	GCNGC	2 cut(s)	183, 299
Sau3AI	GATC	4 cut(s)	10, 268, 337, 748
Sau96I	GGNCC	1 cut(s)	760
SchI	GAGTC	1 cut(s)	599
ScrFI	CCNGG	3 cut(s)	417, 649, 764
SduI	GDGCHC	2 cut(s)	261, 410
SetI	ASST	6 cut(s)	69, 154, 261, 491, 653, 714
SfcI	CTRYAG	1 cut(s)	186
Sfr274I	CTCGAG	1 cut(s)	401
SinI	GGWCC	1 cut(s)	760
SlaI	CTCGAG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	4 cut(s)	85, 274, 363, 466
SsiI	CCGC	2 cut(s)	299, 329
SspMI	CTAG	1 cut(s)	284
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	3 cut(s)	415, 647, 762
TaaI	ACNGT	2 cut(s)	679, 756
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	402
TaqII	GACCGA	1 cut(s)	748
TasI	AATT	4 cut(s)	85, 274, 363, 466
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	301
Tru1I	TTAA	3 cut(s)	30, 252, 293
Tru9I	TTAA	3 cut(s)	30, 252, 293
TscAI	CASTG	1 cut(s)	682
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	3 cut(s)	17, 45, 392
TspRI	CASTG	1 cut(s)	682
VpaK11BI	GGWCC	1 cut(s)	760
XapI	RAATTY	1 cut(s)	85
XhoI	CTCGAG	1 cut(s)	401
XmnI	GAANNNNTTC	1 cut(s)	431
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.