Rh2DG179700

Mitogen-activated protein kinase kinase kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
15851657 .. 15854958
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG179700.1

Sequence Viewer

Length: 1272 bp
ATGGCCGGAGGTGAGCTTGTTGCAGGGGCAGCTCTGGGATTACCATTTAATATCCTGTATGATGTGATTAAGGAAGTGATGAACAAGACTACAATGTTTAAACCCCTTCTCGGAGATCTCAGCTCCACCATGGAATCGTTACAACCACTGATCACTGACATAGCCAAGCACAACAGGGACTTGGGACGTCCAGAGGAGGAGCTACAAAGTTTCAAGAAGCAAATGGAGAACGGCGCAGAGCTTGTTCGAAAGTGCTCCAAGGTTGGTTTATGGACCAGCTACAAGAAATATGGATACGCCAACAAGTTAATGGACCTAGACAAATCTCTCAACAGATTGTTGGCTATACTCAGCGTTCAGGGAATAAGGGCCGGGATGGAGACCTTGGTGGTGGTGAAGGAAACACTGACTACGGTGAGGAGAATTGAAGATAATGGTGTTGGTAAAGAAGAGAAAGTTGTGGTGCATAATCTGATCGAGTTTCAAAAGGGAAAGCTTATTGGGAGTGGCCCGTTCGGACCTCGCTATGTTGCCAGCAATAGAGTAACTGGAGCTTTATGTTCAATGAAGGAAGTTGACTCATCTCCCAATGGCTCAATTTCCGCAAAATGTTTAGAGACGGAAATTAGAGTGCTCACCAAGCTGAGGCATCCTAACATTGTGGAGTTTTATGGAAGCCAAATGGTTGGTGATCGATTTTATATATATCAGGAGTATGTCCACCCTGGCTCTTTGAGCAGATATATGAATGAACGTTATGGAGCCATAACAGAATCTATTGTTCGTAATTTTACTCGGCAGATAATGTCTGGGTTGGCTTACATGCATAGCAAACACATAGCACACAGGAGCATCAAAGGGGCTAATTTGCTTGTCGATTCAAGTGGAATTGTCAAGCTAGCTGACTTTGGGATGGCACGATTACTTTCAGGGCATGAAGGAAATACATCTCTAGAGGGGGGAAATCCATACTACTGGATGGCTCCAGAGTTAATTATTTCTGGGAGGCAGAGTCTTGCTGCTGATATTTGGAGTTTGGGTTGCACAGTTATTGAAATGCTGACCGGAAGAGCTCATCAGAACGCATATGAAAGTATGGAAGCCTTGTTTAAAACTTCTAGTGGGAATGAGGATAATCCAGAGCTTCCGGGAACATTGTCATTGGAGGGCAAGAATTTCGTAGAATGCTGCTTGCGAATAAATCCTGCAGATAGGCCTACTGCTGCCATGTTGTTAGAACATCCATTCTTAACAAGTTCATCCAGGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000165 GO:0000186 GO:0000187 GO:0001932 GO:0001934 GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009719 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0032101 GO:0032147 GO:0032268 GO:0032270 GO:0032879 GO:0033554 GO:0033674 GO:0035556 GO:0035690 GO:0036211 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043900 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0140096 GO:1900150 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902531 GO:1902533 GO:2000071
Pfam Domains
Protein Families

Protein Analysis

423

Amino Acids

46.74

Weight (kDa)

8.1

Isoelectric Point (pI)

43.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 5 - 139 3.5e-32 Arabidopsis broad-spectrum mildew resistance protein RPW8
Pkinase PF00069 161 - 417 8.4e-58 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 163 - 413 6.9e-42 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 190
AciI CCGC 1 cut(s) 603
AclI AACGTT 1 cut(s) 754
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 1174
AcyI GRCGYC 1 cut(s) 187
AfiI CCNNNNNNNGG 2 cut(s) 110, 645
AgsI TTSAA 6 cut(s) 214, 428, 485, 564, 882, 1055
AjnI CCWGG 2 cut(s) 724, 1262
Alw21I GWGCWC 3 cut(s) 257, 636, 1075
Alw26I GTCTC 2 cut(s) 374, 611
AoxI GGCC 4 cut(s) 3, 369, 508, 1214
ApeKI GCWGC 4 cut(s) 29, 1019, 1188, 1223
ApoI RAATTY 1 cut(s) 1174
AspLEI GCGC 1 cut(s) 236
AspS9I GGNCC 5 cut(s) 273, 313, 369, 509, 518
AsuC2I CCSGG 2 cut(s) 373, 1149
AsuHPI GGTGA 5 cut(s) 23, 406, 427, 628, 701
AsuII TTCGAA 1 cut(s) 247
AsuNHI GCTAGC 1 cut(s) 898
AvaII GGWCC 3 cut(s) 273, 313, 518
BanII GRGCYC 1 cut(s) 1075
Bbv12I GWGCWC 3 cut(s) 257, 636, 1075
BbvCI CCTCAGC 1 cut(s) 644
BbvI GCAGC 4 cut(s) 41, 1006, 1175, 1210
BccI CCATC 3 cut(s) 370, 907, 973
BceAI ACGGC 1 cut(s) 247
BcgI CGANNNNNNTGC 2 cut(s) 1159, 1193
BciT130I CCWGG 2 cut(s) 726, 1264
BciVI GTATCC 1 cut(s) 287
BclI TGATCA 1 cut(s) 150
BcnI CCSGG 2 cut(s) 373, 1149
BcoDI GTCTC 2 cut(s) 374, 611
BfaI CTAG 4 cut(s) 317, 899, 953, 1119
BfmI CTRYAG 1 cut(s) 1206
BfuI GTATCC 1 cut(s) 287
BglII AGATCT 1 cut(s) 115
BisI GCNGC 4 cut(s) 30, 1020, 1189, 1224
BlsI GCNGC 4 cut(s) 31, 1021, 1190, 1225
Bme1390I CCNGG 4 cut(s) 373, 726, 1149, 1264
Bme18I GGWCC 3 cut(s) 273, 313, 518
BmgT120I GGNCC 5 cut(s) 273, 313, 369, 509, 518
BmiI GGNNCC 2 cut(s) 763, 984
BmrFI CCNGG 4 cut(s) 373, 726, 1149, 1264
BmsI GCATC 2 cut(s) 658, 861
BmtI GCTAGC 1 cut(s) 902
BpmI CTGGAG 2 cut(s) 570, 969
Bpu10I CCTNAGC 1 cut(s) 644
Bpu14I TTCGAA 1 cut(s) 247
BpuMI CCSGG 2 cut(s) 373, 1149
Bsa29I ATCGAT 1 cut(s) 694
BsaHI GRCGYC 1 cut(s) 187
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 5 cut(s) 129, 258, 384, 724, 1263
BsaWI WCCGGW 1 cut(s) 1064
BsaXI ACNNNNNCTCC 4 cut(s) 997, 1024, 1027, 1054
Bsc4I CCNNNNNNNGG 2 cut(s) 110, 645
Bse1I ACTGG 2 cut(s) 553, 980
BseBI CCWGG 2 cut(s) 726, 1264
BseCI ATCGAT 1 cut(s) 694
BseDI CCNNGG 5 cut(s) 129, 258, 384, 724, 1263
BseGI GGATG 6 cut(s) 381, 649, 918, 984, 1240, 1259
BseLI CCNNNNNNNGG 2 cut(s) 110, 645
BseMII CTCAG 3 cut(s) 133, 364, 635
BseNI ACTGG 2 cut(s) 553, 980
BseRI GAGGAG 3 cut(s) 209, 212, 433
BseXI GCAGC 4 cut(s) 41, 1006, 1175, 1210
BshFI GGCC 4 cut(s) 5, 371, 510, 1216
BshVI ATCGAT 1 cut(s) 694
BsiHKAI GWGCWC 3 cut(s) 257, 636, 1075
BsiSI CCGG 4 cut(s) 6, 372, 1065, 1148
BslFI GGGAC 2 cut(s) 191, 198
BslI CCNNNNNNNGG 2 cut(s) 110, 645
BsmAI GTCTC 2 cut(s) 374, 611
BsmBI CGTCTC 1 cut(s) 611
BsmFI GGGAC 2 cut(s) 191, 198
BsmI GAATGC 1 cut(s) 1190
BsnI GGCC 4 cut(s) 5, 371, 510, 1216
Bso31I GGTCTC 1 cut(s) 374
Bsp119I TTCGAA 1 cut(s) 247
Bsp1286I GDGCHC 3 cut(s) 257, 636, 1075
Bsp143I GATC 4 cut(s) 115, 150, 474, 691
Bsp19I CCATGG 1 cut(s) 129
BspACI CCGC 1 cut(s) 603
BspANI GGCC 4 cut(s) 5, 371, 510, 1216
BspCNI CTCAG 3 cut(s) 132, 363, 636
BspDI ATCGAT 1 cut(s) 694
BspLI GGNNCC 2 cut(s) 763, 984
BspMAI CTGCAG 1 cut(s) 1210
BspOI GCTAGC 1 cut(s) 902
BspQI GCTCTTC 1 cut(s) 1063
BspT104I TTCGAA 1 cut(s) 247
BspTNI GGTCTC 1 cut(s) 374
BsrI ACTGG 2 cut(s) 553, 980
BssECI CCNNGG 5 cut(s) 129, 258, 384, 724, 1263
BssMI GATC 4 cut(s) 115, 150, 474, 691
BssNI GRCGYC 1 cut(s) 187
BssT1I CCWWGG 3 cut(s) 129, 258, 384
Bst2UI CCWGG 2 cut(s) 726, 1264
Bst4CI ACNGT 2 cut(s) 415, 1048
Bst6I CTCTTC 2 cut(s) 444, 1063
BstACI GRCGYC 1 cut(s) 187
BstBI TTCGAA 1 cut(s) 247
BstC8I GCNNGC 3 cut(s) 535, 900, 1193
BstDEI CTNAG 3 cut(s) 119, 350, 644
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 6 cut(s) 381, 649, 918, 984, 1240, 1259
BstHHI GCGC 1 cut(s) 236
BstKTI GATC 4 cut(s) 118, 153, 477, 694
BstMAI GTCTC 2 cut(s) 374, 611
BstMBI GATC 4 cut(s) 115, 150, 474, 691
BstMWI GCNNNNNNNGC 3 cut(s) 29, 640, 735
BstNI CCWGG 2 cut(s) 726, 1264
BstNSI RCATGY 1 cut(s) 826
BstSCI CCNGG 4 cut(s) 371, 724, 1147, 1262
BstSFI CTRYAG 1 cut(s) 1206
BstV1I GCAGC 4 cut(s) 41, 1006, 1175, 1210
BstX2I RGATCY 1 cut(s) 115
BstXI CCANNNNNNTGG 2 cut(s) 686, 975
BstYI RGATCY 1 cut(s) 115
Bsu15I ATCGAT 1 cut(s) 694
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 4 cut(s) 5, 371, 510, 1216
BsuTUI ATCGAT 1 cut(s) 694
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 6 cut(s) 381, 649, 918, 984, 1240, 1259
BtsIMutI CAGTG 3 cut(s) 146, 153, 404
Cac8I GCNNGC 3 cut(s) 535, 900, 1193
CfoI GCGC 1 cut(s) 236
Cfr13I GGNCC 5 cut(s) 273, 313, 369, 509, 518
ClaI ATCGAT 1 cut(s) 694
CviAII CATG 4 cut(s) 130, 823, 935, 1228
DdeI CTNAG 3 cut(s) 119, 350, 644
DpnI GATC 4 cut(s) 117, 152, 476, 693
DpnII GATC 4 cut(s) 115, 150, 474, 691
DraI TTTAAA 2 cut(s) 100, 1111
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 444, 1063
EarI CTCTTC 2 cut(s) 444, 1063
Ecl136II GAGCTC 1 cut(s) 1073
Eco130I CCWWGG 3 cut(s) 129, 258, 384
Eco147I AGGCCT 1 cut(s) 1216
Eco24I GRGCYC 1 cut(s) 1075
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 3 cut(s) 273, 313, 518
Eco53kI GAGCTC 1 cut(s) 1073
EcoICRI GAGCTC 1 cut(s) 1073
EcoRII CCWGG 2 cut(s) 724, 1262
EcoT14I CCWWGG 3 cut(s) 129, 258, 384
EcoT22I ATGCAT 1 cut(s) 828
EcoT38I GRGCYC 1 cut(s) 1075
ErhI CCWWGG 3 cut(s) 129, 258, 384
Esp3I CGTCTC 1 cut(s) 611
FaeI CATG 4 cut(s) 133, 826, 938, 1231
FaqI GGGAC 2 cut(s) 191, 198
FatI CATG 4 cut(s) 129, 822, 934, 1227
FauNDI CATATG 1 cut(s) 1087
FbaI TGATCA 1 cut(s) 150
Fnu4HI GCNGC 4 cut(s) 30, 1020, 1189, 1224
FokI GGATG 6 cut(s) 388, 636, 925, 991, 1227, 1246
FriOI GRGCYC 1 cut(s) 1075
Fsp4HI GCNGC 4 cut(s) 30, 1020, 1189, 1224
FspBI CTAG 4 cut(s) 317, 899, 953, 1119
GlaI GCGC 1 cut(s) 235
GluI GCNGC 4 cut(s) 30, 1020, 1189, 1224
GsuI CTGGAG 2 cut(s) 570, 969
HaeIII GGCC 4 cut(s) 5, 371, 510, 1216
HapII CCGG 4 cut(s) 6, 372, 1065, 1148
HhaI GCGC 1 cut(s) 236
Hin1I GRCGYC 1 cut(s) 187
Hin1II CATG 4 cut(s) 133, 826, 938, 1231
Hin6I GCGC 1 cut(s) 234
HinP1I GCGC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 577
HindII GTYRAC 1 cut(s) 577
HindIII AAGCTT 1 cut(s) 494
HinfI GANTC 5 cut(s) 134, 578, 773, 878, 1012
HpaII CCGG 4 cut(s) 6, 372, 1065, 1148
HphI GGTGA 5 cut(s) 23, 406, 427, 628, 701
Hpy166II GTNNAC 2 cut(s) 577, 721
Hpy188I TCNGA 4 cut(s) 113, 474, 518, 1080
Hpy188III TCNNGA 6 cut(s) 191, 214, 710, 953, 986, 1139
Hpy8I GTNNAC 2 cut(s) 577, 721
HpyAV CCTTC 4 cut(s) 116, 391, 562, 932
HpyCH4III ACNGT 2 cut(s) 415, 1048
HpyCH4IV ACGT 2 cut(s) 187, 754
HpyCH4V TGCA 5 cut(s) 23, 466, 826, 1044, 1208
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 640, 735
HpyF3I CTNAG 3 cut(s) 119, 350, 644
HpySE526I ACGT 2 cut(s) 187, 754
Hsp92I GRCGYC 1 cut(s) 187
Hsp92II CATG 4 cut(s) 133, 826, 938, 1231
HspAI GCGC 1 cut(s) 234
Ksp22I TGATCA 1 cut(s) 150
Kzo9I GATC 4 cut(s) 115, 150, 474, 691
LguI GCTCTTC 1 cut(s) 1063
LmnI GCTCC 7 cut(s) 128, 199, 260, 551, 761, 849, 988
Lsp1109I GCAGC 4 cut(s) 41, 1006, 1175, 1210
LweI GCATC 2 cut(s) 658, 861
MaeI CTAG 4 cut(s) 317, 899, 953, 1119
MaeII ACGT 2 cut(s) 187, 754
MaeIII GTNAC 2 cut(s) 138, 544
MalI GATC 4 cut(s) 117, 152, 476, 693
MboI GATC 4 cut(s) 115, 150, 474, 691
MboII GAAGA 3 cut(s) 440, 461, 1080
MflI RGATCY 1 cut(s) 115
MhlI GDGCHC 3 cut(s) 257, 636, 1075
MluCI AATT 8 cut(s) 423, 597, 624, 787, 865, 888, 993, 1174
MlyI GAGTC 2 cut(s) 572, 1021
MnlI CCTC 9 cut(s) 187, 190, 411, 531, 639, 949, 999, 1123, 1159
Mph1103I ATGCAT 1 cut(s) 828
MseI TTAA 7 cut(s) 48, 69, 99, 308, 992, 1110, 1250
MspI CCGG 4 cut(s) 6, 372, 1065, 1148
MspR9I CCNGG 4 cut(s) 373, 726, 1149, 1264
MssI GTTTAAAC 1 cut(s) 100
Mva1269I GAATGC 1 cut(s) 1190
MvaI CCWGG 2 cut(s) 726, 1264
MwoI GCNNNNNNNGC 3 cut(s) 29, 640, 735
NciI CCSGG 2 cut(s) 373, 1149
NcoI CCATGG 1 cut(s) 129
NdeI CATATG 1 cut(s) 1087
NdeII GATC 4 cut(s) 115, 150, 474, 691
NheI GCTAGC 1 cut(s) 898
NlaIII CATG 4 cut(s) 133, 826, 938, 1231
NlaIV GGNNCC 2 cut(s) 763, 984
NmeAIII GCCGAG 1 cut(s) 775
NsiI ATGCAT 1 cut(s) 828
NspI RCATGY 1 cut(s) 826
NspV TTCGAA 1 cut(s) 247
PceI AGGCCT 1 cut(s) 1216
PciSI GCTCTTC 1 cut(s) 1063
PctI GAATGC 1 cut(s) 1190
PfeI GAWTC 3 cut(s) 134, 773, 878
PfoI TCCNGGA 1 cut(s) 1147
PkrI GCNGC 4 cut(s) 31, 1021, 1190, 1225
PleI GAGTC 2 cut(s) 572, 1020
PmeI GTTTAAAC 1 cut(s) 100
PpsI GAGTC 2 cut(s) 572, 1020
Psp124BI GAGCTC 1 cut(s) 1075
Psp1406I AACGTT 1 cut(s) 754
Psp6I CCWGG 2 cut(s) 724, 1262
PspGI CCWGG 2 cut(s) 724, 1262
PspN4I GGNNCC 2 cut(s) 763, 984
PspPI GGNCC 5 cut(s) 273, 313, 369, 509, 518
PstI CTGCAG 1 cut(s) 1210
PsuI RGATCY 1 cut(s) 115
SacI GAGCTC 1 cut(s) 1075
SapI GCTCTTC 1 cut(s) 1063
SaqAI TTAA 7 cut(s) 48, 69, 99, 308, 992, 1110, 1250
SatI GCNGC 4 cut(s) 30, 1020, 1189, 1224
Sau3AI GATC 4 cut(s) 115, 150, 474, 691
Sau96I GGNCC 5 cut(s) 273, 313, 369, 509, 518
SchI GAGTC 2 cut(s) 572, 1021
ScrFI CCNGG 4 cut(s) 373, 726, 1149, 1264
SduI GDGCHC 3 cut(s) 257, 636, 1075
SfaNI GCATC 2 cut(s) 658, 861
SfcI CTRYAG 1 cut(s) 1206
SfuI TTCGAA 1 cut(s) 247
SinI GGWCC 3 cut(s) 273, 313, 518
Sse9I AATT 8 cut(s) 423, 597, 624, 787, 865, 888, 993, 1174
SseBI AGGCCT 1 cut(s) 1216
SsiI CCGC 1 cut(s) 603
SspMI CTAG 4 cut(s) 317, 899, 953, 1119
SstI GAGCTC 1 cut(s) 1075
StuI AGGCCT 1 cut(s) 1216
StyD4I CCNGG 4 cut(s) 371, 724, 1147, 1262
StyI CCWWGG 3 cut(s) 129, 258, 384
TaaI ACNGT 2 cut(s) 415, 1048
TaiI ACGT 2 cut(s) 190, 757
TaqI TCGA 4 cut(s) 247, 477, 694, 876
TasI AATT 8 cut(s) 423, 597, 624, 787, 865, 888, 993, 1174
TfiI GAWTC 3 cut(s) 134, 773, 878
Tru1I TTAA 7 cut(s) 48, 69, 99, 308, 992, 1110, 1250
Tru9I TTAA 7 cut(s) 48, 69, 99, 308, 992, 1110, 1250
TscAI CASTG 3 cut(s) 153, 160, 411
TseI GCWGC 4 cut(s) 29, 1019, 1188, 1223
TspDTI ATGAA 7 cut(s) 95, 581, 761, 765, 951, 1104, 1248
TspGWI ACGGA 1 cut(s) 635
TspRI CASTG 3 cut(s) 153, 160, 411
VpaK11BI GGWCC 3 cut(s) 273, 313, 518
XapI RAATTY 1 cut(s) 1174
XbaI TCTAGA 1 cut(s) 952
XceI RCATGY 1 cut(s) 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XspI CTAG 4 cut(s) 317, 899, 953, 1119
ZraI GACGTC 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 828
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.