Rmu_sc0042080.1_g000001

disease resistance

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042080.1
OG0017401
Physical Location & Seq
Forward (+)
93 .. 748
656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042080.1_g000001.1.cds

Sequence Viewer

Length: 656 bp
atggagaaccttgttgcagggggtgctatgggtgtaccatttaatgcgctttatgacgtcattaagagtgtggtggtcaagactaagatgtttaaatctctcctcgaagatcttgactcaacgatagagtctttgaaaccactgatcgatgacatggaaaagtgcaataaggtgttggatcatccggagaatgaacttaaaggatttaaagtacaaatgcagaagggtgcagtgctcattcccaagtgctccaaggttaggtggtggaatatttgcaaaaagtataaatacaccaaccaacttcttggattaaacagctctcttcggagtttatttgatatactgaacgtgcaagctgcaagagatgggaagaagacgctggcggttgtccaacatactcatacaacaatactggaagttgcagagaatgtgcaacagaacttggttgcgacaaatgatatagagacggtggtccatcggactgatgtaacaagcttgcaagtagcaagggatgtgagaaatatagatactgtggtccagcgtactgatgaaacaagcttgcaagtagcaaggggtgtgagaaacatagagacagtggtacagcggattgatgacaatgttgtgttactggtacacaatcagaaaatagaccaggt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04014 map04014
Pfam Domains
Protein Families
NB-ARC RPW8

Protein Analysis

219

Amino Acids

24.68

Weight (kDa)

7.72

Isoelectric Point (pI)

33.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 2 cut(s) 383, 604
AclWI GGATC 1 cut(s) 186
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 5 cut(s) 36, 213, 544, 600, 633
AfiI CCNNNNNNNGG 1 cut(s) 258
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 651
AluBI AGCT 4 cut(s) 318, 356, 495, 558
AluI AGCT 4 cut(s) 318, 356, 495, 558
Alw21I GWGCWC 2 cut(s) 237, 251
Alw26I GTCTC 2 cut(s) 458, 584
AlwI GGATC 1 cut(s) 186
Aor13HI TCCGGA 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 49
AspS9I GGNCC 2 cut(s) 472, 535
AvaII GGWCC 2 cut(s) 472, 535
BaeI ACNNNNGTAYC 2 cut(s) 519, 552
BbsI GAAGAC 1 cut(s) 380
Bbv12I GWGCWC 2 cut(s) 237, 251
BbvI GCAGC 1 cut(s) 343
BccI CCATC 2 cut(s) 359, 483
BciT130I CCWGG 1 cut(s) 653
BcoDI GTCTC 2 cut(s) 458, 584
BglII AGATCT 1 cut(s) 109
BisI GCNGC 1 cut(s) 357
BlsI GCNGC 1 cut(s) 358
Bme1390I CCNGG 1 cut(s) 653
Bme18I GGWCC 2 cut(s) 472, 535
BmgT120I GGNCC 2 cut(s) 472, 535
BmrFI CCNGG 1 cut(s) 653
BoxI GACNNNNGTC 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 380
Bsa29I ATCGAT 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 252
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 2 cut(s) 417, 633
BseAI TCCGGA 1 cut(s) 184
BseBI CCWGG 1 cut(s) 653
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 252
BseGI GGATG 2 cut(s) 181, 517
BseLI CCNNNNNNNGG 1 cut(s) 258
BseNI ACTGG 2 cut(s) 417, 633
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 343
BsgI GTGCAG 1 cut(s) 249
BshVI ATCGAT 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 237, 251
BsiSI CCGG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 458, 584
BsmBI CGTCTC 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 237, 251
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 3 cut(s) 109, 144, 178
BspACI CCGC 2 cut(s) 383, 604
BspDI ATCGAT 1 cut(s) 147
BspEI TCCGGA 1 cut(s) 184
BspPI GGATC 1 cut(s) 186
BsrI ACTGG 2 cut(s) 417, 633
BssECI CCNNGG 1 cut(s) 252
BssMI GATC 3 cut(s) 109, 144, 178
BssNI GRCGYC 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 653
Bst4CI ACNGT 3 cut(s) 469, 532, 595
Bst6I CTCTTC 1 cut(s) 327
BstACI GRCGYC 1 cut(s) 57
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 4 cut(s) 354, 381, 497, 560
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 2 cut(s) 181, 517
BstHHI GCGC 1 cut(s) 49
BstKTI GATC 3 cut(s) 112, 147, 181
BstMAI GTCTC 2 cut(s) 458, 584
BstMBI GATC 3 cut(s) 109, 144, 178
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 653
BstPAI GACNNNNGTC 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 651
BstV1I GCAGC 1 cut(s) 343
BstV2I GAAGAC 1 cut(s) 380
BstX2I RGATCY 1 cut(s) 109
BstXI CCANNNNNNTGG 1 cut(s) 305
BstYI RGATCY 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 147
BsuTUI ATCGAT 1 cut(s) 147
BtsCI GGATG 2 cut(s) 181, 517
BtsI GCAGTG 1 cut(s) 237
BtsIMutI CAGTG 3 cut(s) 140, 237, 600
Cac8I GCNNGC 4 cut(s) 354, 381, 497, 560
CfoI GCGC 1 cut(s) 49
Cfr13I GGNCC 2 cut(s) 472, 535
ClaI ATCGAT 1 cut(s) 147
CseI GACGC 1 cut(s) 385
CsiI ACCWGGT 1 cut(s) 651
Csp6I GTAC 5 cut(s) 35, 212, 543, 599, 632
CviAII CATG 1 cut(s) 154
CviJI RGCY 4 cut(s) 318, 356, 495, 558
CviKI_1 RGCY 4 cut(s) 318, 356, 495, 558
CviQI GTAC 5 cut(s) 35, 212, 543, 599, 632
DdeI CTNAG 1 cut(s) 84
DpnI GATC 3 cut(s) 111, 146, 180
DpnII GATC 3 cut(s) 109, 144, 178
DraI TTTAAA 2 cut(s) 94, 208
Eam1104I CTCTTC 1 cut(s) 327
EarI CTCTTC 1 cut(s) 327
Eco130I CCWWGG 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 472, 535
EcoRII CCWGG 1 cut(s) 651
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 1 cut(s) 157
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 357
FokI GGATG 2 cut(s) 168, 524
Fsp4HI GCNGC 1 cut(s) 357
GlaI GCGC 1 cut(s) 48
GluI GCNGC 1 cut(s) 357
HapII CCGG 1 cut(s) 185
HgaI GACGC 1 cut(s) 385
HhaI GCGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 1 cut(s) 47
HinP1I GCGC 1 cut(s) 47
HindIII AAGCTT 2 cut(s) 493, 556
HinfI GANTC 2 cut(s) 116, 128
HpaII CCGG 1 cut(s) 185
Hpy166II GTNNAC 2 cut(s) 35, 634
Hpy188I TCNGA 3 cut(s) 327, 480, 642
Hpy188III TCNNGA 3 cut(s) 79, 113, 185
Hpy8I GTNNAC 2 cut(s) 35, 634
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 3 cut(s) 469, 532, 595
HpyCH4IV ACGT 2 cut(s) 57, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 2 cut(s) 57, 348
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 1 cut(s) 47
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 3 cut(s) 109, 144, 178
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 7 cut(s) 3, 198, 365, 398, 551, 614, 638
Lsp1109I GCAGC 1 cut(s) 343
MabI ACCWGGT 1 cut(s) 651
MaeII ACGT 2 cut(s) 57, 348
MaeIII GTNAC 2 cut(s) 487, 624
MalI GATC 3 cut(s) 111, 146, 180
MboI GATC 3 cut(s) 109, 144, 178
MboII GAAGA 4 cut(s) 119, 314, 382, 385
MflI RGATCY 1 cut(s) 109
MhlI GDGCHC 2 cut(s) 237, 251
MlyI GAGTC 2 cut(s) 110, 137
MmeI TCCRAC 2 cut(s) 156, 415
MnlI CCTC 1 cut(s) 113
MroI TCCGGA 1 cut(s) 184
MseI TTAA 6 cut(s) 42, 63, 93, 198, 207, 311
MspA1I CMGCKG 1 cut(s) 604
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 653
MvaI CCWGG 1 cut(s) 653
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 3 cut(s) 109, 144, 178
NlaIII CATG 1 cut(s) 157
PkrI GCNGC 1 cut(s) 358
PleI GAGTC 2 cut(s) 110, 136
PpsI GAGTC 2 cut(s) 110, 136
PshAI GACNNNNGTC 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 651
PspGI CCWGG 1 cut(s) 651
PspPI GGNCC 2 cut(s) 472, 535
PsuI RGATCY 1 cut(s) 109
RsaI GTAC 5 cut(s) 36, 213, 544, 600, 633
RsaNI GTAC 5 cut(s) 35, 212, 543, 599, 632
SaqAI TTAA 6 cut(s) 42, 63, 93, 198, 207, 311
SatI GCNGC 1 cut(s) 357
Sau3AI GATC 3 cut(s) 109, 144, 178
Sau96I GGNCC 2 cut(s) 472, 535
SchI GAGTC 2 cut(s) 110, 137
ScrFI CCNGG 1 cut(s) 653
SduI GDGCHC 2 cut(s) 237, 251
SexAI ACCWGGT 1 cut(s) 651
SinI GGWCC 2 cut(s) 472, 535
SsiI CCGC 2 cut(s) 383, 604
SspI AATATT 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 651
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 3 cut(s) 469, 532, 595
TaiI ACGT 2 cut(s) 60, 351
TaqI TCGA 2 cut(s) 105, 147
TatI WGTACW 1 cut(s) 211
Tru1I TTAA 6 cut(s) 42, 63, 93, 198, 207, 311
Tru9I TTAA 6 cut(s) 42, 63, 93, 198, 207, 311
TscAI CASTG 3 cut(s) 147, 237, 600
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 2 cut(s) 207, 564
TspRI CASTG 3 cut(s) 147, 237, 600
VpaK11BI GGWCC 2 cut(s) 472, 535
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.