Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0017401

Physical Location & Seq

Genomic Coordinates Reverse (-)

76942321 .. 76945242

Gene Structure 2922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00138740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCCGGTGGTGAGCTTGTTGCAGGGGCAGCTCTGGGATTACCATTTAATATCCTGTATGATGTGATTAAGGACGTGACGAACAAGACTACAATGTTTAAACCCCTTCTCGGAGATCTCAGCTCCACCATGGAATCGTTACAACCACTGATCACTGACATAGCCAAGCACAACAGGGACGTGGGACGTCCAGAGGAGGAGCTACAAAGTTTCAAGAAGCAAATGGAGAACGGCGCAGAGCTTGTTCGAAAGTGCTCCAAGGTTGGTTTATGGACCAGCTACAAGAAATATGGATACGCCAACAAGTTAATGAACCTAGACAAATCTCTCAACAGATTGTTGGCTATACTCAGCGTGCAGGGAATAAGGGCCGGGATGGAGACCTTGGTGGTGGTGAAGGAAACACTGACTACAGTGAAGAGAATTGAAGACAATGGTGTTGGTAAAGACGAGAAAGTTGTGGTGCATAACCTGATTGAGTTTCAAAAGGGAAAGCTTATTGGGAGTGGCCCGTTCGGACCTCGTTATGTTGCCAGCAATAGAGTAACTGGAGCTTTATGTTCAATGAAGGAAGTTGACTTATCTCCCAATGGCTCAATTTCTGCAAAATGTTTAGAGACGGAAATTAGAGTGCTCACCAAGCTGAGGCATCCTAACATTGTGGAGTTTTATGGAAGCCAAAAGGTTGATGATCGAGTTTATATATATCAGGAGTATGTCCAGCCCGGCTCTTTGAGCAAATATATGAATGAACGTTATGGAGCCATAACAGAATCTATTGTTCGTAATTTTACTCCGCAGATAATGTCTGGGTTGGCTTACATGCATGGCAAACACATAGCACACAGGAGCATCAAAGGGGCTAATTTGCTTGTCGATTCAAGTGGAATTGTCAAGCTAGCTGACTTTGGGATGGCACGATTATTGTTGCCATTTCGCGTAGCTTTCAGGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04011 ko04139 ko04722 ko04912 ko05166 map04010 map04011 map04139 map04722 map04912 map05166

Pfam Domains

Protein Families

Pkinase

Protein Analysis

318

Amino Acids

35.26

Weight (kDa)

9.41

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	5 - 140	1.1e-32	Arabidopsis broad-spectrum mildew resistance protein RPW8
Pkinase	PF00069	161 - 309	6.6e-35	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	164 - 309	2.4e-24	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017401)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g13100
rosa_chinensis	RchiOBHm_Chr2g0104831
rosa_laevigata	RLG00000017362
rosa_multiflora	Rmu_co8514665.1_g000001 Rmu_sc0003419.1_g000022 Rmu_sc0042080.1_g000001
rosa_roxburghii	Rroxscaffold_2G00138740
rosa_rugosa	Rorug02G0123400 Rorug02G0123400
rosa_samantha	Rh2AG173500 Rh2BG181100 Rh2CG178400 Rh2DG179700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	190
AccII	CGCG	1 cut(s)	939
AciI	CCGC	1 cut(s)	797
AclI	AACGTT	1 cut(s)	754
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	187
AfiI	CCNNNNNNNGG	2 cut(s)	110, 645
AgsI	TTSAA	5 cut(s)	214, 428, 485, 564, 882
AjiI	CACGTC	2 cut(s)	76, 181
Alw21I	GWGCWC	2 cut(s)	257, 636
Alw26I	GTCTC	2 cut(s)	374, 611
AoxI	GGCC	3 cut(s)	3, 369, 508
ApeKI	GCWGC	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	236
AspS9I	GGNCC	4 cut(s)	273, 369, 509, 518
AsuC2I	CCSGG	2 cut(s)	373, 726
AsuHPI	GGTGA	3 cut(s)	23, 406, 628
AsuII	TTCGAA	1 cut(s)	247
AsuNHI	GCTAGC	1 cut(s)	898
AvaII	GGWCC	2 cut(s)	273, 518
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	2 cut(s)	257, 636
BbvCI	CCTCAGC	1 cut(s)	644
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	2 cut(s)	370, 907
BceAI	ACGGC	1 cut(s)	247
BciVI	GTATCC	1 cut(s)	287
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	2 cut(s)	373, 726
BcoDI	GTCTC	2 cut(s)	374, 611
BfaI	CTAG	2 cut(s)	317, 899
BfmI	CTRYAG	1 cut(s)	411
BfuI	GTATCC	1 cut(s)	287
BglII	AGATCT	1 cut(s)	115
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
Bme1390I	CCNGG	2 cut(s)	373, 726
Bme18I	GGWCC	2 cut(s)	273, 518
BmgBI	CACGTC	2 cut(s)	76, 181
BmgT120I	GGNCC	4 cut(s)	273, 369, 509, 518
BmiI	GGNNCC	1 cut(s)	763
BmrFI	CCNGG	2 cut(s)	373, 726
BmsI	GCATC	2 cut(s)	658, 861
BmtI	GCTAGC	1 cut(s)	902
BpiI	GAAGAC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	570
Bpu10I	CCTNAGC	1 cut(s)	644
Bpu14I	TTCGAA	1 cut(s)	247
BpuMI	CCSGG	2 cut(s)	373, 726
BsaHI	GRCGYC	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	3 cut(s)	129, 258, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	110, 645
Bse118I	RCCGGY	1 cut(s)	5
Bse1I	ACTGG	1 cut(s)	553
BseDI	CCNNGG	3 cut(s)	129, 258, 384
BseGI	GGATG	3 cut(s)	381, 649, 918
BseLI	CCNNNNNNNGG	2 cut(s)	110, 645
BseMII	CTCAG	3 cut(s)	133, 364, 635
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	2 cut(s)	209, 212
BseXI	GCAGC	1 cut(s)	41
BsgI	GTGCAG	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	939
BshFI	GGCC	3 cut(s)	5, 371, 510
BsiHKAI	GWGCWC	2 cut(s)	257, 636
BsiSI	CCGG	3 cut(s)	6, 372, 726
BslFI	GGGAC	2 cut(s)	191, 198
BslI	CCNNNNNNNGG	2 cut(s)	110, 645
BsmAI	GTCTC	2 cut(s)	374, 611
BsmBI	CGTCTC	1 cut(s)	611
BsmFI	GGGAC	2 cut(s)	191, 198
BsnI	GGCC	3 cut(s)	5, 371, 510
Bso31I	GGTCTC	1 cut(s)	374
Bsp119I	TTCGAA	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	257, 636
Bsp143I	GATC	3 cut(s)	115, 150, 691
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	1 cut(s)	797
BspANI	GGCC	3 cut(s)	5, 371, 510
BspCNI	CTCAG	3 cut(s)	132, 363, 636
BspFNI	CGCG	1 cut(s)	939
BspLI	GGNNCC	1 cut(s)	763
BspOI	GCTAGC	1 cut(s)	902
BspT104I	TTCGAA	1 cut(s)	247
BspTNI	GGTCTC	1 cut(s)	374
BsrFI	RCCGGY	1 cut(s)	5
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	1 cut(s)	5
BssECI	CCNNGG	3 cut(s)	129, 258, 384
BssMI	GATC	3 cut(s)	115, 150, 691
BssNI	GRCGYC	1 cut(s)	187
BssT1I	CCWWGG	3 cut(s)	129, 258, 384
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	413
BstACI	GRCGYC	1 cut(s)	187
BstBI	TTCGAA	1 cut(s)	247
BstC8I	GCNNGC	3 cut(s)	356, 535, 900
BstDEI	CTNAG	3 cut(s)	119, 350, 644
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	381, 649, 918
BstFNI	CGCG	1 cut(s)	939
BstHHI	GCGC	1 cut(s)	236
BstKTI	GATC	3 cut(s)	118, 153, 694
BstMAI	GTCTC	2 cut(s)	374, 611
BstMBI	GATC	3 cut(s)	115, 150, 691
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 640, 735, 950
BstNSI	RCATGY	1 cut(s)	826
BstSCI	CCNGG	2 cut(s)	371, 724
BstSFI	CTRYAG	1 cut(s)	411
BstUI	CGCG	1 cut(s)	939
BstV1I	GCAGC	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BsuI	GTATCC	1 cut(s)	287
BsuRI	GGCC	3 cut(s)	5, 371, 510
BtgI	CCRYGG	1 cut(s)	129
BtrI	CACGTC	2 cut(s)	76, 181
BtsCI	GGATG	3 cut(s)	381, 649, 918
BtsIMutI	CAGTG	4 cut(s)	146, 153, 404, 420
Cac8I	GCNNGC	3 cut(s)	356, 535, 900
CfoI	GCGC	1 cut(s)	236
Cfr10I	RCCGGY	1 cut(s)	5
Cfr13I	GGNCC	4 cut(s)	273, 369, 509, 518
CviAII	CATG	4 cut(s)	130, 823, 827, 954
DdeI	CTNAG	3 cut(s)	119, 350, 644
DpnI	GATC	3 cut(s)	117, 152, 693
DpnII	GATC	3 cut(s)	115, 150, 691
DraI	TTTAAA	1 cut(s)	100
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	413
EarI	CTCTTC	1 cut(s)	413
Eco130I	CCWWGG	3 cut(s)	129, 258, 384
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	2 cut(s)	273, 518
EcoT14I	CCWWGG	3 cut(s)	129, 258, 384
EcoT22I	ATGCAT	1 cut(s)	828
ErhI	CCWWGG	3 cut(s)	129, 258, 384
Esp3I	CGTCTC	1 cut(s)	611
FaeI	CATG	4 cut(s)	133, 826, 830, 957
FaqI	GGGAC	2 cut(s)	191, 198
FatI	CATG	4 cut(s)	129, 822, 826, 953
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	3 cut(s)	388, 636, 925
Fsp4HI	GCNGC	1 cut(s)	30
FspBI	CTAG	2 cut(s)	317, 899
GlaI	GCGC	1 cut(s)	235
GluI	GCNGC	1 cut(s)	30
GsuI	CTGGAG	1 cut(s)	570
HaeIII	GGCC	3 cut(s)	5, 371, 510
HapII	CCGG	3 cut(s)	6, 372, 726
HhaI	GCGC	1 cut(s)	236
Hin1I	GRCGYC	1 cut(s)	187
Hin1II	CATG	4 cut(s)	133, 826, 830, 957
Hin6I	GCGC	1 cut(s)	234
HinP1I	GCGC	1 cut(s)	234
HincII	GTYRAC	1 cut(s)	577
HindII	GTYRAC	1 cut(s)	577
HindIII	AAGCTT	1 cut(s)	494
HinfI	GANTC	3 cut(s)	134, 773, 878
HpaII	CCGG	3 cut(s)	6, 372, 726
HphI	GGTGA	3 cut(s)	23, 406, 628
Hpy166II	GTNNAC	1 cut(s)	577
Hpy188I	TCNGA	2 cut(s)	113, 518
Hpy188III	TCNNGA	3 cut(s)	191, 214, 710
Hpy8I	GTNNAC	1 cut(s)	577
HpyAV	CCTTC	3 cut(s)	116, 391, 562
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4IV	ACGT	4 cut(s)	75, 180, 187, 754
HpyCH4V	TGCA	5 cut(s)	23, 358, 466, 605, 826
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 640, 735, 950
HpyF3I	CTNAG	3 cut(s)	119, 350, 644
HpySE526I	ACGT	4 cut(s)	75, 180, 187, 754
Hsp92I	GRCGYC	1 cut(s)	187
Hsp92II	CATG	4 cut(s)	133, 826, 830, 957
HspAI	GCGC	1 cut(s)	234
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	115, 150, 691
LmnI	GCTCC	6 cut(s)	128, 199, 260, 551, 761, 849
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	2 cut(s)	658, 861
MaeI	CTAG	2 cut(s)	317, 899
MaeII	ACGT	4 cut(s)	75, 180, 187, 754
MaeIII	GTNAC	3 cut(s)	76, 138, 544
MalI	GATC	3 cut(s)	117, 152, 693
MboI	GATC	3 cut(s)	115, 150, 691
MboII	GAAGA	2 cut(s)	430, 440
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	257, 636
MluCI	AATT	6 cut(s)	423, 597, 624, 787, 865, 888
MnlI	CCTC	4 cut(s)	187, 190, 531, 639
Mph1103I	ATGCAT	1 cut(s)	828
MseI	TTAA	4 cut(s)	48, 69, 99, 308
MspI	CCGG	3 cut(s)	6, 372, 726
MspR9I	CCNGG	2 cut(s)	373, 726
MssI	GTTTAAAC	1 cut(s)	100
MvnI	CGCG	1 cut(s)	939
MwoI	GCNNNNNNNGC	4 cut(s)	29, 640, 735, 950
NciI	CCSGG	2 cut(s)	373, 726
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	3 cut(s)	115, 150, 691
NheI	GCTAGC	1 cut(s)	898
NlaIII	CATG	4 cut(s)	133, 826, 830, 957
NlaIV	GGNNCC	1 cut(s)	763
NmuCI	GTSAC	1 cut(s)	76
NsiI	ATGCAT	1 cut(s)	828
NspI	RCATGY	1 cut(s)	826
NspV	TTCGAA	1 cut(s)	247
PfeI	GAWTC	3 cut(s)	134, 773, 878
PkrI	GCNGC	1 cut(s)	31
PmeI	GTTTAAAC	1 cut(s)	100
Psp1406I	AACGTT	1 cut(s)	754
PspN4I	GGNNCC	1 cut(s)	763
PspPI	GGNCC	4 cut(s)	273, 369, 509, 518
PsuI	RGATCY	1 cut(s)	115
SaqAI	TTAA	4 cut(s)	48, 69, 99, 308
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	3 cut(s)	115, 150, 691
Sau96I	GGNCC	4 cut(s)	273, 369, 509, 518
ScrFI	CCNGG	2 cut(s)	373, 726
SduI	GDGCHC	2 cut(s)	257, 636
SfaNI	GCATC	2 cut(s)	658, 861
SfcI	CTRYAG	1 cut(s)	411
SfuI	TTCGAA	1 cut(s)	247
SinI	GGWCC	2 cut(s)	273, 518
Sse9I	AATT	6 cut(s)	423, 597, 624, 787, 865, 888
SsiI	CCGC	1 cut(s)	797
SspMI	CTAG	2 cut(s)	317, 899
StyD4I	CCNGG	2 cut(s)	371, 724
StyI	CCWWGG	3 cut(s)	129, 258, 384
TaaI	ACNGT	1 cut(s)	415
TaiI	ACGT	4 cut(s)	78, 183, 190, 757
TaqI	TCGA	3 cut(s)	247, 694, 876
TasI	AATT	6 cut(s)	423, 597, 624, 787, 865, 888
TfiI	GAWTC	3 cut(s)	134, 773, 878
Tru1I	TTAA	4 cut(s)	48, 69, 99, 308
Tru9I	TTAA	4 cut(s)	48, 69, 99, 308
TscAI	CASTG	4 cut(s)	153, 160, 411, 420
TseFI	GTSAC	1 cut(s)	76
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	76
TspDTI	ATGAA	4 cut(s)	326, 581, 761, 765
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	4 cut(s)	153, 160, 411, 420
VpaK11BI	GGWCC	2 cut(s)	273, 518
XceI	RCATGY	1 cut(s)	826
XspI	CTAG	2 cut(s)	317, 899
ZraI	GACGTC	1 cut(s)	188
Zsp2I	ATGCAT	1 cut(s)	828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.