Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007572

Physical Location & Seq

Genomic Coordinates Forward (+)

23994270 .. 23996869

Gene Structure 2600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1509 bp

ATGGATCCTAACCTTGGAAAAAATGTGTGTTATGTTCAGTTTCCACAGAGGTTTGATGGTATTGATAGAAACGATCGATACGCCAATCGTAACACTGTTTTCTTTGATATTAACTTGAGAGGTTTAGACGGAATTCAAGGACCAGTTTATGTGGGTACTGGGTGTGTCTTCAATAGAACAGCTTTGTATGGTTACGAACCTCCTGTCAAGCCTAAGCATAAGAAAACAGGAGTTCTATCTTCACTTTGTGGTGGATCACGGAAGAAGGGTTCAAAATCCAGTAAAAAGGGATCGGATAAAAAGAAATCTAAGAATGTCGATCCTACTGTGCCAATTTTCAGTCTAGAGGATATTGAAGAGGGGGTGGAAGGTGCTGGATTTGACGATGAGAAGTCATTATTGATGTCACAAATGAGCCTAGAAAAGAGGTTTGGTCAGTCTTCTGTTTTTGTTGCCTCTACACTGATGGAGAATGGCGGTGTTCCTCAATCTGCGACACCAGAAACTCTTCTTAAAGAAGCTATTCATGTTATCAGCTGTGGATATGAAGACAAATCTGATTGGGGAAATGAGTGGATGGATCGATCAGGTTCCGTCACAGAAGATATTCTTACAGGATTCAAGATGCATGCCCGTGGGTGGAGGTCTATATACTGCATGCCTAAGCTCCCAGCATTTAAAGGGTCTGCTCCTATTAATCTTTCAGATCGTCTGAACCAAGTGCTTCGATGGGCTTTGCGATCCGTGGAAATTCTTCTTAGTCGGCATTGTCCTATCTGGTATGGTTACAGTGGGAGGCTAAAATGGCTGGAGAGATTTGCGTATGTGAACACTACCATTTACCCAATCACTTCCATACCTCTTCTCATGTACTGTACACTGCCGGCTGTCTGTCTTCTTACCAACAAATTCATCATTCCACAGATTAGCAATCTTGCAAGTATATGGTTTATCTCCCTCTTTCTTTCTATCTTTGCAACTGGTATTCTAGAGATGAGGTGGAGTGGTGTTGGAATCGACGAGTGGTGGAGAAATGAACAGTTTTGGGTTATTGGTGGTGTTTCTGCCCATCTGTTTGCCGTTGTCCAAGGTATTCTCAAAGTACTTGCTGGTATTGACACCAACTTCACTGTCACCTCCAAGGCATCAGACGAAGATGGGGACTTTAATGAACTCTACATGTTTAAATGGACAACACTTCTGATCCCGCCAACAACTCTCCTCATCGTAAACTTGGTAGGGGTTGTAGCAGGTATATCGTATGCTATCAATAGCGGTTACCAATCATGGGGTCCCCTCTTTGGTAAGCTCTTCTTTGCCTTTTGGGTGATTGTCCATTTGTACCCCTTCCTCAAAGGTCTCATGGGACGTCAGAACCGTACGCCCACCATTGTCATCGTGTGGTCGATTCTCCTTGCTTCAATTTTCTCTTTGTTGTGGGTGAGGGTTGATCCCTTCACCACAAGAGTCACCGGACCAAATATTGACGAGTGTGGAATCAACTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009506 GO:0009832 GO:0009833 GO:0009834 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030054 GO:0030243 GO:0030244 GO:0031410 GO:0031982 GO:0031984 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046527 GO:0050896 GO:0051273 GO:0051274 GO:0051301 GO:0055044 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0097708 GO:0098791 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt zf-UDP

Protein Analysis

503

Amino Acids

56.24

Weight (kDa)

8.76

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	1 - 495	3.5e-259	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007572)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05170
fragaria_vesca	FvH4_7g01100 FvH4_7g01100 FvH4_7g01100 FvH4_7g01100 FvH4_7g01100
malus_domestica	MD02G1311600.v1.1 MD07G1011100.v1.1
prunus_persica	Prupe.2G011200_v2.0.a1 Prupe.2G014300_v2.0.a1 Prupe.2G014300_v2.0.a1
pyrus_communis	pycom02g26140 pycom02g26150 pycom07g00920
rosa_chinensis	RchiOBHm_Chr1g0316091
rosa_laevigata	RLG00000030696
rosa_multiflora	Rmu_sc0002531.1_g000033
rosa_roxburghii	Rroxscaffold_4G00331140
rosa_rugosa	Rorug01G0008900
rosa_samantha	Rh1AG019000 Rh1BG013900 Rh1CG016600 Rh1DG013600
rosa_wichuraiana	Rw1G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1372
Acc36I	ACCTGC	1 cut(s)	1241
AciI	CCGC	3 cut(s)	477, 1208, 1275
AclWI	GGATC	8 cut(s)	12, 262, 298, 314, 588, 735, 1198, 1445
AcsI	RAATTY	3 cut(s)	132, 750, 908
AcyI	GRCGYC	1 cut(s)	1369
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	6 cut(s)	157, 872, 877, 1104, 1343, 1381
AfiI	CCNNNNNNNGG	4 cut(s)	14, 639, 1288, 1301
AflIII	ACRYGT	1 cut(s)	1179
AgsI	TTSAA	6 cut(s)	137, 172, 273, 356, 622, 1422
AjuI	GAANNNNNNNTTGG	2 cut(s)	414, 446
AloI	GAACNNNNNNTCC	2 cut(s)	253, 285
AluBI	AGCT	5 cut(s)	182, 521, 537, 667, 1309
AluI	AGCT	5 cut(s)	182, 521, 537, 667, 1309
Alw26I	GTCTC	1 cut(s)	1364
AlwI	GGATC	8 cut(s)	12, 262, 298, 314, 588, 735, 1198, 1445
ApoI	RAATTY	3 cut(s)	132, 750, 908
ArsI	GACNNNNNNTTYG	2 cut(s)	189, 221
AseI	ATTAAT	1 cut(s)	696
Asp700I	GAANNNNTTC	4 cut(s)	507, 522, 606, 753
AspS9I	GGNCC	3 cut(s)	140, 1292, 1475
AsuHPI	GGTGA	5 cut(s)	1126, 1339, 1450, 1453, 1462
AvaII	GGWCC	3 cut(s)	140, 1292, 1475
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	4 cut(s)	160, 432, 555, 887
BccI	CCATC	6 cut(s)	50, 460, 571, 723, 1077, 1151
BceAI	ACGGC	1 cut(s)	1064
BcgI	CGANNNNNNTGC	2 cut(s)	1239, 1273
BcoDI	GTCTC	1 cut(s)	1364
BfaI	CTAG	4 cut(s)	344, 419, 989, 1507
BfuAI	ACCTGC	1 cut(s)	1241
BmcAI	AGTACT	1 cut(s)	1104
Bme18I	GGWCC	3 cut(s)	140, 1292, 1475
BmgT120I	GGNCC	3 cut(s)	140, 1292, 1475
BmiI	GGNNCC	4 cut(s)	6, 592, 1293, 1294
BmrI	ACTGGG	1 cut(s)	168
BmsI	GCATC	2 cut(s)	615, 1154
BmuI	ACTGGG	1 cut(s)	168
BpiI	GAAGAC	4 cut(s)	160, 432, 555, 887
BpmI	CTGGAG	1 cut(s)	830
Bpu10I	CCTNAGC	2 cut(s)	213, 663
BpuEI	CTTGAG	1 cut(s)	136
Bsa29I	ATCGAT	2 cut(s)	76, 583
BsaHI	GRCGYC	1 cut(s)	1369
BsaI	GGTCTC	1 cut(s)	1364
BsaJI	CCNNGG	5 cut(s)	13, 634, 744, 1087, 1140
BsaWI	WCCGGW	1 cut(s)	1472
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 639, 1288, 1301
Bse118I	RCCGGY	1 cut(s)	883
Bse1I	ACTGG	4 cut(s)	143, 163, 279, 985
BseCI	ATCGAT	2 cut(s)	76, 583
BseDI	CCNNGG	5 cut(s)	13, 634, 744, 1087, 1140
BseGI	GGATG	1 cut(s)	582
BseLI	CCNNNNNNNGG	4 cut(s)	14, 639, 1288, 1301
BseNI	ACTGG	4 cut(s)	143, 163, 279, 985
BseRI	GAGGAG	1 cut(s)	1211
BseYI	CCCAGC	1 cut(s)	670
Bsh1285I	CGRYCG	1 cut(s)	76
BshVI	ATCGAT	2 cut(s)	76, 583
BsiEI	CGRYCG	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	884, 1473
BsiWI	CGTACG	1 cut(s)	1379
BslFI	GGGAC	3 cut(s)	1175, 1278, 1380
BslI	CCNNNNNNNGG	4 cut(s)	14, 639, 1288, 1301
BsmAI	GTCTC	1 cut(s)	1364
BsmFI	GGGAC	3 cut(s)	1175, 1278, 1380
Bso31I	GGTCTC	1 cut(s)	1364
Bsp1407I	TGTACA	1 cut(s)	875
BspACI	CCGC	3 cut(s)	477, 1208, 1275
BspDI	ATCGAT	2 cut(s)	76, 583
BspLI	GGNNCC	4 cut(s)	6, 592, 1293, 1294
BspMI	ACCTGC	1 cut(s)	1241
BspPI	GGATC	8 cut(s)	12, 262, 298, 314, 588, 735, 1198, 1445
BspQI	GCTCTTC	1 cut(s)	1316
BspTNI	GGTCTC	1 cut(s)	1364
BsrFI	RCCGGY	1 cut(s)	883
BsrGI	TGTACA	1 cut(s)	875
BsrI	ACTGG	4 cut(s)	143, 163, 279, 985
BssAI	RCCGGY	1 cut(s)	883
BssECI	CCNNGG	5 cut(s)	13, 634, 744, 1087, 1140
BssNI	GRCGYC	1 cut(s)	1369
BssT1I	CCWWGG	3 cut(s)	13, 1087, 1140
Bst4CI	ACNGT	7 cut(s)	97, 328, 791, 875, 1041, 1132, 1379
Bst6I	CTCTTC	4 cut(s)	351, 513, 867, 1316
BstACI	GRCGYC	1 cut(s)	1369
BstAUI	TGTACA	1 cut(s)	875
BstC8I	GCNNGC	3 cut(s)	630, 659, 885
BstDEI	CTNAG	4 cut(s)	213, 309, 663, 758
BstDSI	CCRYGG	2 cut(s)	634, 744
BstEII	GGTNACC	1 cut(s)	1277
BstF5I	GGATG	1 cut(s)	582
BstMAI	GTCTC	1 cut(s)	1364
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	1 cut(s)	805
BstNSI	RCATGY	3 cut(s)	632, 661, 1183
BstPI	GGTNACC	1 cut(s)	1277
BstV2I	GAAGAC	4 cut(s)	160, 432, 555, 887
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
Bsu15I	ATCGAT	2 cut(s)	76, 583
BsuTUI	ATCGAT	2 cut(s)	76, 583
BtgI	CCRYGG	2 cut(s)	634, 744
BtsCI	GGATG	1 cut(s)	582
BtsI	GCAGTG	1 cut(s)	878
BtsIMutI	CAGTG	5 cut(s)	93, 461, 796, 878, 1128
BveI	ACCTGC	1 cut(s)	1241
Cac8I	GCNNGC	3 cut(s)	630, 659, 885
Cfr10I	RCCGGY	1 cut(s)	883
Cfr13I	GGNCC	3 cut(s)	140, 1292, 1475
ClaI	ATCGAT	2 cut(s)	76, 583
Csp6I	GTAC	6 cut(s)	156, 871, 876, 1103, 1342, 1380
CviAII	CATG	7 cut(s)	527, 629, 658, 868, 1180, 1287, 1363
CviQI	GTAC	6 cut(s)	156, 871, 876, 1103, 1342, 1380
DdeI	CTNAG	4 cut(s)	213, 309, 663, 758
DraI	TTTAAA	2 cut(s)	679, 1186
DraIII	CACNNNGTG	1 cut(s)	248
Eam1104I	CTCTTC	4 cut(s)	351, 513, 867, 1316
EarI	CTCTTC	4 cut(s)	351, 513, 867, 1316
Eco130I	CCWWGG	3 cut(s)	13, 1087, 1140
Eco31I	GGTCTC	1 cut(s)	1364
Eco47I	GGWCC	3 cut(s)	140, 1292, 1475
Eco91I	GGTNACC	1 cut(s)	1277
EcoO109I	RGGNCCY	1 cut(s)	1292
EcoO65I	GGTNACC	1 cut(s)	1277
EcoRI	GAATTC	1 cut(s)	132
EcoT14I	CCWWGG	3 cut(s)	13, 1087, 1140
EcoT22I	ATGCAT	1 cut(s)	630
ErhI	CCWWGG	3 cut(s)	13, 1087, 1140
FaeI	CATG	7 cut(s)	530, 632, 661, 871, 1183, 1290, 1366
FalI	AAGNNNNNCTT	4 cut(s)	594, 626, 1298, 1330
FaqI	GGGAC	3 cut(s)	1175, 1278, 1380
FatI	CATG	7 cut(s)	526, 628, 657, 867, 1179, 1286, 1362
FauI	CCCGC	1 cut(s)	1215
FokI	GGATG	1 cut(s)	589
FspBI	CTAG	4 cut(s)	344, 419, 989, 1507
GsaI	CCCAGC	1 cut(s)	674
GsuI	CTGGAG	1 cut(s)	830
HapII	CCGG	2 cut(s)	884, 1473
Hin1I	GRCGYC	1 cut(s)	1369
Hin1II	CATG	7 cut(s)	530, 632, 661, 871, 1183, 1290, 1366
HinfI	GANTC	5 cut(s)	618, 1014, 1408, 1467, 1497
HpaII	CCGG	2 cut(s)	884, 1473
HphI	GGTGA	5 cut(s)	1126, 1339, 1450, 1453, 1462
Hpy166II	GTNNAC	3 cut(s)	829, 878, 1231
Hpy188I	TCNGA	7 cut(s)	295, 559, 706, 714, 1150, 1203, 1374
Hpy188III	TCNNGA	3 cut(s)	344, 622, 989
Hpy8I	GTNNAC	3 cut(s)	829, 878, 1231
Hpy99I	CGWCG	1 cut(s)	1022
HpyAV	CCTTC	4 cut(s)	259, 362, 1357, 1465
HpyCH4III	ACNGT	7 cut(s)	97, 328, 791, 875, 1041, 1132, 1379
HpyCH4IV	ACGT	1 cut(s)	1369
HpyCH4V	TGCA	4 cut(s)	628, 657, 938, 977
HpyF10VI	GCNNNNNNNGC	1 cut(s)	805
HpyF3I	CTNAG	4 cut(s)	213, 309, 663, 758
HpySE526I	ACGT	1 cut(s)	1369
Hsp92I	GRCGYC	1 cut(s)	1369
Hsp92II	CATG	7 cut(s)	530, 632, 661, 871, 1183, 1290, 1366
KflI	GGGWCCC	1 cut(s)	1292
KroI	GCCGGC	1 cut(s)	883
KroNI	GCCGGC	1 cut(s)	885
LguI	GCTCTTC	1 cut(s)	1316
LmnI	GCTCC	2 cut(s)	672, 694
LweI	GCATC	2 cut(s)	615, 1154
MaeI	CTAG	4 cut(s)	344, 419, 989, 1507
MaeII	ACGT	1 cut(s)	1369
MaeIII	GTNAC	8 cut(s)	89, 191, 405, 595, 785, 1132, 1277, 1468
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	5 cut(s)	132, 333, 750, 908, 1422
MlyI	GAGTC	1 cut(s)	1476
MmeI	TCCRAC	1 cut(s)	991
Mph1103I	ATGCAT	1 cut(s)	630
MroNI	GCCGGC	1 cut(s)	883
MroXI	GAANNNNTTC	4 cut(s)	507, 522, 606, 753
MseI	TTAA	6 cut(s)	111, 513, 678, 696, 1167, 1185
MslI	CAYNNNNRTG	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	537
MspI	CCGG	2 cut(s)	884, 1473
MwoI	GCNNNNNNNGC	1 cut(s)	805
NaeI	GCCGGC	1 cut(s)	885
NgoMIV	GCCGGC	1 cut(s)	883
NlaIII	CATG	7 cut(s)	530, 632, 661, 871, 1183, 1290, 1366
NlaIV	GGNNCC	4 cut(s)	6, 592, 1293, 1294
NmuCI	GTSAC	4 cut(s)	405, 595, 1132, 1468
NsiI	ATGCAT	1 cut(s)	630
NspI	RCATGY	3 cut(s)	632, 661, 1183
PaeI	GCATGC	2 cut(s)	632, 661
PciI	ACATGT	1 cut(s)	1179
PciSI	GCTCTTC	1 cut(s)	1316
PcsI	WCGNNNNNNNCGW	1 cut(s)	1375
PdiI	GCCGGC	1 cut(s)	885
PdmI	GAANNNNTTC	4 cut(s)	507, 522, 606, 753
PfeI	GAWTC	4 cut(s)	618, 1014, 1408, 1497
Pfl23II	CGTACG	1 cut(s)	1379
Ple19I	CGATCG	1 cut(s)	76
PleI	GAGTC	1 cut(s)	1475
PpsI	GAGTC	1 cut(s)	1475
PpuMI	RGGWCCY	1 cut(s)	1292
PscI	ACATGT	1 cut(s)	1179
PshBI	ATTAAT	1 cut(s)	696
Psp5II	RGGWCCY	1 cut(s)	1292
PspEI	GGTNACC	1 cut(s)	1277
PspFI	CCCAGC	1 cut(s)	670
PspLI	CGTACG	1 cut(s)	1379
PspN4I	GGNNCC	4 cut(s)	6, 592, 1293, 1294
PspPI	GGNCC	3 cut(s)	140, 1292, 1475
PspPPI	RGGWCCY	1 cut(s)	1292
PsuI	RGATCY	1 cut(s)	4
PvuI	CGATCG	1 cut(s)	76
PvuII	CAGCTG	1 cut(s)	537
RsaI	GTAC	6 cut(s)	157, 872, 877, 1104, 1343, 1381
RsaNI	GTAC	6 cut(s)	156, 871, 876, 1103, 1342, 1380
RseI	CAYNNNNRTG	1 cut(s)	633
SapI	GCTCTTC	1 cut(s)	1316
SaqAI	TTAA	6 cut(s)	111, 513, 678, 696, 1167, 1185
Sau96I	GGNCC	3 cut(s)	140, 1292, 1475
ScaI	AGTACT	1 cut(s)	1104
SchI	GAGTC	1 cut(s)	1476
SfaNI	GCATC	2 cut(s)	615, 1154
SinI	GGWCC	3 cut(s)	140, 1292, 1475
SmiMI	CAYNNNNRTG	1 cut(s)	633
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
SphI	GCATGC	2 cut(s)	632, 661
Sse9I	AATT	5 cut(s)	132, 333, 750, 908, 1422
SsiI	CCGC	3 cut(s)	477, 1208, 1275
SspI	AATATT	1 cut(s)	1483
SspMI	CTAG	4 cut(s)	344, 419, 989, 1507
StyI	CCWWGG	3 cut(s)	13, 1087, 1140
TaaI	ACNGT	7 cut(s)	97, 328, 791, 875, 1041, 1132, 1379
TaiI	ACGT	1 cut(s)	1372
TaqI	TCGA	6 cut(s)	76, 318, 583, 727, 1017, 1406
TasI	AATT	5 cut(s)	132, 333, 750, 908, 1422
TatI	WGTACW	3 cut(s)	870, 875, 1102
TfiI	GAWTC	4 cut(s)	618, 1014, 1408, 1497
Tru1I	TTAA	6 cut(s)	111, 513, 678, 696, 1167, 1185
Tru9I	TTAA	6 cut(s)	111, 513, 678, 696, 1167, 1185
TscAI	CASTG	5 cut(s)	100, 468, 796, 885, 1135
TseFI	GTSAC	4 cut(s)	405, 595, 1132, 1468
Tsp45I	GTSAC	4 cut(s)	405, 595, 1132, 1468
TspDTI	ATGAA	5 cut(s)	515, 561, 901, 1050, 1185
TspGWI	ACGGA	4 cut(s)	144, 274, 583, 733
TspRI	CASTG	5 cut(s)	100, 468, 796, 885, 1135
VpaK11BI	GGWCC	3 cut(s)	140, 1292, 1475
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	3 cut(s)	132, 750, 908
XbaI	TCTAGA	2 cut(s)	343, 988
XceI	RCATGY	3 cut(s)	632, 661, 1183
XmnI	GAANNNNTTC	4 cut(s)	507, 522, 606, 753
XspI	CTAG	4 cut(s)	344, 419, 989, 1507
ZraI	GACGTC	1 cut(s)	1370
ZrmI	AGTACT	1 cut(s)	1104
Zsp2I	ATGCAT	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.