Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006701

Physical Location & Seq

Genomic Coordinates Reverse (-)

2237347 .. 2238863

Gene Structure 1517 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGCCCTCGGCGAGATCGATCAGTACCCTCAAGTTTGCTGAGAGGGTTGCATCCATCGAGCTTGGGGCAGCTCAATCTCATAAAGAAACGGGTGAAATCCGCGAACTTAAAGACGAGATATCAAATCTTAAACTGGCATTGGAGAGAAAGGAAGCTGAGCTAGAGCAAATTAAAGGCAACACACGAAACGCCACAGATTCCCAAAAGTCAAGAGCTGTTTCACCTTTCCGTGTTCCAAGAAATGGTACTGGAAACAGTTCAAAGCCTGAAAACTGTCAGCGAGCCTTGGACGATACTAAGATTTCTGAGGCAAGAAGTTGCTCTACGGGCAAGCAAAGGCGGTTGAGGTTTCCCTCTGCATTCGCCGACAAGGAGATTGCACCGAAGATGCCATTACCAGTTGAAGACAGATTAGTCATCCCTGGACATCTCAGAACACCATCACCTCCAGTTAGGAGATCGATATCTACTGATAGAGGGGCCTTCATCAAAAGTAGGAATAAGGCTGACACAACCGAAAACCAACCAATTGCGAAAGTACCATTTCCAGCTAGAGTACCTGTCAATAAATCCCTTGCAACTATGCCGGTGTTCCCATCAACTGAGAACAACTCGAGGGTATGCACCAGTTCGCGAGAACCAACTAAGCACGAGGACATTTTCGGTGCATTAAACAGTCTCCAGAAGGCCAACTCCAAGAAAGTTTACCAAGAACCTGAAGACGAGCAGTTTAAGCTAGCTCTTAATGTAAGGCAAGGCGGTATTAGAAAAATCAAGAATGAGAGTAAGGCAGCTAAGGCCAAGCAGAACCGGATACCAGCTAGAGTTCAAAATTCTGATGCAGTGACAACAATGTTTCCCAACTCAGATGCTGGTGAAAAGATTGAAGAGGCTCGGAAGAGTGACTTCTCTGAGCCAGAAAATGAAGATATCCTCATTGCTTCACCCAAGCATAATTCCTTGATGGCAAAAAAGCTTCGGCAACCCTTGCCAAGGAACTATATAAATCTTGAACCACGAGGACTAGTGCAACCAGAAGAACCTTTACTGGCTGGAAAGTCCGAAAACAAGCTTCTAAATGGCGTAACACGAAATCAAAAGGAAGGCGGCAACATGGCCATGCCTGAAATCAGAAGAAGCCGATCCACACGGAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005856 GO:0005871 GO:0005875 GO:0006091 GO:0006928 GO:0007017 GO:0007018 GO:0007275 GO:0008150 GO:0008152 GO:0009060 GO:0009791 GO:0009845 GO:0009987 GO:0015630 GO:0015980 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0032501 GO:0032502 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045333 GO:0048856 GO:0055114 GO:0090351

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH Kinesin

Protein Analysis

387

Amino Acids

43.0

Weight (kDa)

9.95

Isoelectric Point (pI)

64.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006701)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44730 AT3G44730 AT3G44730 AT3G44730
fragaria_vesca	FvH4_3g42160
malus_domestica	MD03G1037300.v1.1 MD03G1037400.v1.1 MD11G1038400.v1.1 MD11G1038500.v1.1
prunus_persica	Prupe.6G029300_v2.0.a1 Prupe.6G029300_v2.0.a1 Prupe.6G029300_v2.0.a1 Prupe.6G029300_v2.0.a1
pyrus_communis	pycom03g02870 pycom11g03260
rosa_chinensis	RchiOBHm_Chr5g0075401 RchiOBHm_Chr5g0075421
rosa_laevigata	RLG00000036560
rosa_multiflora	Rmu_sc0000770.1_g000017
rosa_roxburghii	Rroxscaffold_1G00006100
rosa_rugosa	Rorug05G0439500
rosa_samantha	Rh5AG496100 Rh5BG517700 Rh5CG541300 Rh5DG531600
rosa_wichuraiana	Rw5G046030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	413
AccB7I	CCANNNNNTGG	1 cut(s)	242
AccII	CGCG	2 cut(s)	102, 634
AciI	CCGC	4 cut(s)	100, 340, 759, 1107
AclWI	GGATC	1 cut(s)	1137
AcoI	YGGCCR	1 cut(s)	1116
AcsI	RAATTY	2 cut(s)	832, 1153
AcuI	CTGAAG	1 cut(s)	738
AfaI	GTAC	4 cut(s)	25, 247, 540, 558
AfiI	CCNNNNNNNGG	2 cut(s)	242, 993
AgsI	TTSAA	5 cut(s)	261, 404, 830, 887, 1013
AhlI	ACTAGT	1 cut(s)	1024
AjnI	CCWGG	1 cut(s)	421
Alw26I	GTCTC	1 cut(s)	683
AlwI	GGATC	1 cut(s)	1137
AlwNI	CAGNNNCTG	1 cut(s)	872
Ama87I	CYCGRG	1 cut(s)	613
AoxI	GGCC	4 cut(s)	480, 687, 798, 1116
ApeKI	GCWGC	2 cut(s)	68, 791
ApoI	RAATTY	2 cut(s)	832, 1153
Asp700I	GAANNNNTTC	1 cut(s)	256
AspS9I	GGNCC	1 cut(s)	480
AsuHPI	GGTGA	5 cut(s)	104, 213, 435, 887, 936
AsuNHI	GCTAGC	1 cut(s)	736
AvaI	CYCGRG	1 cut(s)	613
BalI	TGGCCA	1 cut(s)	1118
BarI	GAAGNNNNNNTAC	4 cut(s)	307, 339, 1029, 1061
BauI	CACGAG	2 cut(s)	650, 1017
BbsI	GAAGAC	2 cut(s)	411, 726
BbvI	GCAGC	2 cut(s)	80, 803
BccI	CCATC	4 cut(s)	62, 448, 604, 958
BciT130I	CCWGG	1 cut(s)	423
BciVI	GTATCC	1 cut(s)	807
BcoDI	GTCTC	1 cut(s)	683
BcuI	ACTAGT	1 cut(s)	1024
BfaI	CTAG	5 cut(s)	161, 552, 737, 822, 1025
BfuI	GTATCC	1 cut(s)	807
BisI	GCNGC	3 cut(s)	69, 792, 1108
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	3 cut(s)	70, 793, 1109
Bme1390I	CCNGG	1 cut(s)	423
BmeT110I	CYCGRG	1 cut(s)	613
BmgT120I	GGNCC	1 cut(s)	480
BmiI	GGNNCC	1 cut(s)	481
BmrFI	CCNGG	1 cut(s)	423
BmsI	GCATC	4 cut(s)	59, 378, 829, 859
BmtI	GCTAGC	1 cut(s)	740
BpiI	GAAGAC	2 cut(s)	411, 726
BplI	GAGNNNNNCTC	2 cut(s)	596, 628
BpmI	CTGGAG	2 cut(s)	432, 665
Bpu10I	CCTNAGC	1 cut(s)	795
Bpu1102I	GCTNAGC	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	14
Bsa29I	ATCGAT	2 cut(s)	17, 461
BsaBI	GATNNNNATC	1 cut(s)	463
BsaJI	CCNNGG	4 cut(s)	6, 285, 421, 992
BsaWI	WCCGGW	1 cut(s)	810
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 993
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	6 cut(s)	138, 253, 398, 449, 627, 1053
Bse3DI	GCAATG	1 cut(s)	936
Bse8I	GATNNNNATC	1 cut(s)	463
BseBI	CCWGG	1 cut(s)	423
BseCI	ATCGAT	2 cut(s)	17, 461
BseDI	CCNNGG	4 cut(s)	6, 285, 421, 992
BseGI	GGATG	2 cut(s)	50, 417
BseJI	GATNNNNATC	1 cut(s)	463
BseLI	CCNNNNNNNGG	2 cut(s)	242, 993
BseMI	GCAATG	1 cut(s)	936
BseMII	CTCAG	7 cut(s)	30, 147, 297, 445, 594, 879, 903
BseNI	ACTGG	6 cut(s)	138, 253, 398, 449, 627, 1053
BseXI	GCAGC	2 cut(s)	80, 803
Bsh1236I	CGCG	2 cut(s)	102, 634
BshFI	GGCC	4 cut(s)	482, 689, 800, 1118
BshVI	ATCGAT	2 cut(s)	17, 461
BsiHKCI	CYCGRG	1 cut(s)	613
BsiSI	CCGG	2 cut(s)	587, 811
BslI	CCNNNNNNNGG	2 cut(s)	242, 993
BsmAI	GTCTC	1 cut(s)	683
BsmI	GAATGC	1 cut(s)	359
BsnI	GGCC	4 cut(s)	482, 689, 800, 1118
BsoBI	CYCGRG	1 cut(s)	613
Bsp143I	GATC	4 cut(s)	14, 18, 458, 1142
Bsp1720I	GCTNAGC	1 cut(s)	156
Bsp68I	TCGCGA	1 cut(s)	634
BspACI	CCGC	4 cut(s)	100, 340, 759, 1107
BspANI	GGCC	4 cut(s)	482, 689, 800, 1118
BspCNI	CTCAG	7 cut(s)	31, 148, 298, 444, 595, 878, 904
BspDI	ATCGAT	2 cut(s)	17, 461
BspFNI	CGCG	2 cut(s)	102, 634
BspLI	GGNNCC	1 cut(s)	481
BspOI	GCTAGC	1 cut(s)	740
BspPI	GGATC	1 cut(s)	1137
BsrDI	GCAATG	1 cut(s)	936
BsrFI	RCCGGY	1 cut(s)	586
BsrI	ACTGG	6 cut(s)	138, 253, 398, 449, 627, 1053
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	4 cut(s)	6, 285, 421, 992
BssMI	GATC	4 cut(s)	14, 18, 458, 1142
BssSI	CACGAG	2 cut(s)	650, 1017
BssT1I	CCWWGG	2 cut(s)	285, 992
Bst2BI	CACGAG	2 cut(s)	650, 1017
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	3 cut(s)	257, 275, 677
Bst6I	CTCTTC	2 cut(s)	882, 893
BstAPI	GCANNNNNTGC	1 cut(s)	988
BstC8I	GCNNGC	3 cut(s)	282, 332, 738
BstENI	CCTNNNNNAGG	1 cut(s)	991
BstF5I	GGATG	2 cut(s)	50, 417
BstFNI	CGCG	2 cut(s)	102, 634
BstKTI	GATC	4 cut(s)	17, 21, 461, 1145
BstMAI	GTCTC	1 cut(s)	683
BstMBI	GATC	4 cut(s)	14, 18, 458, 1142
BstMWI	GCNNNNNNNGC	4 cut(s)	327, 733, 797, 988
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	421
BstUI	CGCG	2 cut(s)	102, 634
BstV1I	GCAGC	2 cut(s)	80, 803
BstV2I	GAAGAC	2 cut(s)	411, 726
Bsu15I	ATCGAT	2 cut(s)	17, 461
BsuI	GTATCC	1 cut(s)	807
BsuRI	GGCC	4 cut(s)	482, 689, 800, 1118
BsuTUI	ATCGAT	2 cut(s)	17, 461
BtsCI	GGATG	2 cut(s)	50, 417
BtsI	GCAGTG	1 cut(s)	849
BtsIMutI	CAGTG	1 cut(s)	849
BtuMI	TCGCGA	1 cut(s)	634
Cac8I	GCNNGC	3 cut(s)	282, 332, 738
CaiI	CAGNNNCTG	1 cut(s)	872
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	1 cut(s)	480
ClaI	ATCGAT	2 cut(s)	17, 461
Csp6I	GTAC	4 cut(s)	24, 246, 539, 557
CviAII	CATG	2 cut(s)	1114, 1120
CviQI	GTAC	4 cut(s)	24, 246, 539, 557
DpnI	GATC	4 cut(s)	16, 20, 460, 1144
DpnII	GATC	4 cut(s)	14, 18, 458, 1142
DrdI	GACNNNNNNGTC	1 cut(s)	413
DseDI	GACNNNNNNGTC	1 cut(s)	413
EaeI	YGGCCR	1 cut(s)	1116
Eam1104I	CTCTTC	2 cut(s)	882, 893
EarI	CTCTTC	2 cut(s)	882, 893
Eco130I	CCWWGG	2 cut(s)	285, 992
Eco32I	GATATC	3 cut(s)	120, 465, 931
Eco57I	CTGAAG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	613
EcoNI	CCTNNNNNAGG	1 cut(s)	991
EcoO109I	RGGNCCY	1 cut(s)	480
EcoRII	CCWGG	1 cut(s)	421
EcoRV	GATATC	3 cut(s)	120, 465, 931
EcoT14I	CCWWGG	2 cut(s)	285, 992
ErhI	CCWWGG	2 cut(s)	285, 992
FaeI	CATG	2 cut(s)	1117, 1123
FaiI	YATR	8 cut(s)	81, 584, 622, 954, 1002, 1004, 1115, 1121
FalI	AAGNNNNNCTT	2 cut(s)	890, 922
FatI	CATG	2 cut(s)	1113, 1119
Fnu4HI	GCNGC	3 cut(s)	69, 792, 1108
FokI	GGATG	2 cut(s)	37, 404
Fsp4HI	GCNGC	3 cut(s)	69, 792, 1108
FspBI	CTAG	5 cut(s)	161, 552, 737, 822, 1025
GluI	GCNGC	3 cut(s)	69, 792, 1108
GsuI	CTGGAG	2 cut(s)	432, 665
HaeIII	GGCC	4 cut(s)	482, 689, 800, 1118
HapII	CCGG	2 cut(s)	587, 811
Hin1II	CATG	2 cut(s)	1117, 1123
HindIII	AAGCTT	2 cut(s)	974, 1070
HinfI	GANTC	1 cut(s)	197
HpaII	CCGG	2 cut(s)	587, 811
HphI	GGTGA	5 cut(s)	104, 213, 435, 887, 936
Hpy166II	GTNNAC	1 cut(s)	706
Hpy188I	TCNGA	8 cut(s)	307, 434, 838, 868, 897, 913, 1063, 1133
Hpy188III	TCNNGA	5 cut(s)	210, 633, 682, 775, 1010
Hpy8I	GTNNAC	1 cut(s)	706
HpyAV	CCTTC	3 cut(s)	493, 679, 1097
HpyCH4III	ACNGT	3 cut(s)	257, 275, 677
HpyCH4V	TGCA	8 cut(s)	50, 359, 380, 578, 624, 668, 842, 1030
HpyF10VI	GCNNNNNNNGC	4 cut(s)	327, 733, 797, 988
Hsp92II	CATG	2 cut(s)	1117, 1123
Kzo9I	GATC	4 cut(s)	14, 18, 458, 1142
Lsp1109I	GCAGC	2 cut(s)	80, 803
LweI	GCATC	4 cut(s)	59, 378, 829, 859
MaeI	CTAG	5 cut(s)	161, 552, 737, 822, 1025
MaeIII	GTNAC	3 cut(s)	844, 902, 1084
MalI	GATC	4 cut(s)	16, 20, 460, 1144
MboI	GATC	4 cut(s)	14, 18, 458, 1142
MboII	GAAGA	8 cut(s)	397, 416, 731, 899, 910, 938, 1049, 1146
MfeI	CAATTG	1 cut(s)	528
MlsI	TGGCCA	1 cut(s)	1118
MluCI	AATT	5 cut(s)	168, 528, 832, 955, 1153
MluNI	TGGCCA	1 cut(s)	1118
Mox20I	TGGCCA	1 cut(s)	1118
MroXI	GAANNNNTTC	1 cut(s)	256
MscI	TGGCCA	1 cut(s)	1118
MseI	TTAA	6 cut(s)	108, 129, 171, 671, 732, 744
MslI	CAYNNNNRTG	1 cut(s)	1118
Msp20I	TGGCCA	1 cut(s)	1118
MspI	CCGG	2 cut(s)	587, 811
MspR9I	CCNGG	1 cut(s)	423
MunI	CAATTG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	359
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	2 cut(s)	102, 634
MwoI	GCNNNNNNNGC	4 cut(s)	327, 733, 797, 988
NdeII	GATC	4 cut(s)	14, 18, 458, 1142
NheI	GCTAGC	1 cut(s)	736
NlaIII	CATG	2 cut(s)	1117, 1123
NlaIV	GGNNCC	1 cut(s)	481
NmuCI	GTSAC	2 cut(s)	844, 902
NruI	TCGCGA	1 cut(s)	634
PaeR7I	CTCGAG	1 cut(s)	613
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	359
PdmI	GAANNNNTTC	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	242
PkrI	GCNGC	3 cut(s)	70, 793, 1109
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	481
PspPI	GGNCC	1 cut(s)	480
PspXI	VCTCGAGB	1 cut(s)	613
PstNI	CAGNNNCTG	1 cut(s)	872
RruI	TCGCGA	1 cut(s)	634
RsaI	GTAC	4 cut(s)	25, 247, 540, 558
RsaNI	GTAC	4 cut(s)	24, 246, 539, 557
RseI	CAYNNNNRTG	1 cut(s)	1118
SaqAI	TTAA	6 cut(s)	108, 129, 171, 671, 732, 744
SatI	GCNGC	3 cut(s)	69, 792, 1108
Sau3AI	GATC	4 cut(s)	14, 18, 458, 1142
Sau96I	GGNCC	1 cut(s)	480
ScrFI	CCNGG	1 cut(s)	423
SfaNI	GCATC	4 cut(s)	59, 378, 829, 859
Sfr274I	CTCGAG	1 cut(s)	613
SlaI	CTCGAG	1 cut(s)	613
SmiMI	CAYNNNNRTG	1 cut(s)	1118
SmlI	CTYRAG	2 cut(s)	29, 613
SmoI	CTYRAG	2 cut(s)	29, 613
SpeI	ACTAGT	1 cut(s)	1024
Sse9I	AATT	5 cut(s)	168, 528, 832, 955, 1153
SsiI	CCGC	4 cut(s)	100, 340, 759, 1107
SspMI	CTAG	5 cut(s)	161, 552, 737, 822, 1025
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	2 cut(s)	285, 992
TaaI	ACNGT	3 cut(s)	257, 275, 677
TaqI	TCGA	4 cut(s)	17, 57, 461, 614
TasI	AATT	5 cut(s)	168, 528, 832, 955, 1153
TauI	GCSGC	1 cut(s)	1110
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	6 cut(s)	108, 129, 171, 671, 732, 744
Tru9I	TTAA	6 cut(s)	108, 129, 171, 671, 732, 744
TscAI	CASTG	1 cut(s)	849
TseFI	GTSAC	2 cut(s)	844, 902
TseI	GCWGC	2 cut(s)	68, 791
Tsp45I	GTSAC	2 cut(s)	844, 902
TspDTI	ATGAA	2 cut(s)	475, 939
TspGWI	ACGGA	1 cut(s)	218
TspRI	CASTG	1 cut(s)	849
Van91I	CCANNNNNTGG	1 cut(s)	242
XagI	CCTNNNNNAGG	1 cut(s)	991
XapI	RAATTY	2 cut(s)	832, 1153
XhoI	CTCGAG	1 cut(s)	613
XmnI	GAANNNNTTC	1 cut(s)	256
XspI	CTAG	5 cut(s)	161, 552, 737, 822, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.