RchiOBHm_Chr5g0075401
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
81236718 .. 81240691
3974 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35013

Sequence Viewer

Length: 1500 bp
ATGCCGCAAGAAAATTTCTTATCAAATATCTTTCAATCATCTCCTGGCAAGAACTTGAGAGGGTTGAAGGGTTTAGTCTCCAACAATGATCAGGCTCATAATCCATATGCAAACCCAGATGAGCTCATCAATGACTATGAATTGGCCCAGAGAAAAGCAGAGGAAGCAGCTGCAAGGAGATACCAAGCAGCAGAATGGCTGAGGAAAATGGACTATGGTGCCTTAGAAACACTGTCCAAAGAACCCTCTGAAGAAGAGTTTCGCCTTTCACTCCGCAATGGCCTAATTCTCTGCAATGTCCTCAACAAGGTCAATCCTGGTGCTGTTCTCAAGGTGGTGGAAAATCCCATTATTGCTGTTCAGTCGACAGAAGGGGCAGCACAGTCTGCAATTCAGTATTTTGAGAACATGAGGAATTTCCTCGAGGCTGTCAAAGCCATGAAGCTCTTGACATTTGAAGCCTCTGATCTGGAAAAGGGAGGCTCGTCGAGTAAAGTTGTAGACTGCATTCTGTGTCTCAAAGGTTACTATGAATGGAAGCAAGCAGGTGGAATCGGAGTTTGGAGATATGGTGGGACTGTGAGGATCACATGCTTCCCAAAAGGGTCATCATCCTCCTTAGGAGGCAGTGAAAGCGCTGATGAGTCAATAGATGAATCCGATTCATCACAATTTGAACAACTGTTGGACTTTCTTCATCTCTCGAGTGAGGTGTCAACTGAGGAATCCAGAACTGCCGCTGCTTTGGCTTTCCTTTTTGATCGTTTTGGCCTTGGACTTCTTCAAGCTTACCTTCATGAGACCAATGGGATTGAAGATTTTCCTTTGAATGCAATGGTAATAGATACTTTGCTAAGTAAGGTAGTCAAGGATTTCTCAGCACTACTTGTTTCTCAAGGCACTCAGCTTGGCCTGTTTTTGAAGAAACTATTGAGAGGTGATATTGGTGCTCTGTCAAAATCTGAATTTTTAGAAGCCATGAAAAATTATCTAGCACAAAGAAGTCATATGCTGTCGAGTGATCTGTCCAAATTCTGTATTTGTGGGGGAAAACGAGAGGCTCTCCATCATAGTATTAGTCACTCATCTGATCATGAAGAATTAATTGCCATTCAACAGAAGCAGCTTGAGGAGTTAAAGTCCTCTTTCCAAGAAACAAGACTTGAAGTCAAACATGCTCATTCAAACTGGGAGGAGGAACTTAGAAGGCTTGTGCACCATATTAAAGGTCTTGAAGTAACTTCCTCTTCTTACAACAAAGTTCTTGAAGAAAACCGATTTCTCTACAATCAAGTTCAAGACCTCAAAGGAACAATTAGAGTTTATTGCAGAGTGAGGCCCTTCTTAGGTCAATCAAATGGACAATCCTCTGTGGATTACATTGGAGAAAATGGAACCATCATGATTGTTAATCCCCTTAAACAGGGAAAAGACTCGAGAAGGGTCTTTACCTTCAACAAAGTGTTCAGAACAAATGTCACACAAGCAAATATATGTTGA

Protein Analysis

499

Amino Acids

55.85

Weight (kDa)

6.02

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CH PF00307 78 - 178 6.9e-11 Calponin homology (CH) domain
Microtub_bd PF16796 424 - 498 3.2e-12 Microtubule binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 536
AbsI CCTCGAGG 1 cut(s) 422
Acc36I ACCTGC 1 cut(s) 536
AccB1I GGYRCC 1 cut(s) 218
AccI GTMKAC 2 cut(s) 365, 501
AciI CCGC 3 cut(s) 5, 274, 738
AclWI GGATC 1 cut(s) 593
AcsI RAATTY 4 cut(s) 13, 415, 965, 1031
AcuI CTGAAG 1 cut(s) 270
AfeI AGCGCT 1 cut(s) 637
AfiI CCNNNNNNNGG 3 cut(s) 307, 1346, 1423
AhdI GACNNNNNGTC 1 cut(s) 1166
AjnI CCWGG 2 cut(s) 43, 316
AjuI GAANNNNNNNTTGG 2 cut(s) 544, 576
AluBI AGCT 6 cut(s) 124, 170, 445, 788, 907, 1126
AluI AGCT 6 cut(s) 124, 170, 445, 788, 907, 1126
Alw21I GWGCWC 3 cut(s) 126, 952, 1218
Alw26I GTCTC 3 cut(s) 82, 521, 794
Alw44I GTGCAC 1 cut(s) 1214
AlwI GGATC 1 cut(s) 593
Ama87I CYCGRG 3 cut(s) 422, 703, 1435
Aor51HI AGCGCT 1 cut(s) 637
AoxI GGCC 5 cut(s) 144, 280, 769, 910, 1337
ApaLI GTGCAC 1 cut(s) 1214
ApeKI GCWGC 6 cut(s) 167, 170, 188, 377, 740, 1123
ApoI RAATTY 4 cut(s) 13, 415, 965, 1031
AseI ATTAAT 1 cut(s) 1103
Asp700I GAANNNNTTC 2 cut(s) 258, 819
AspLEI GCGC 1 cut(s) 638
AspS9I GGNCC 2 cut(s) 145, 1338
AsuHPI GGTGA 1 cut(s) 950
AvaI CYCGRG 3 cut(s) 422, 703, 1435
AxyI CCTNAGG 1 cut(s) 619
BaeGI GKGCMC 1 cut(s) 1218
BanI GGYRCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 126
BarI GAAGNNNNNNTAC 2 cut(s) 1432, 1464
Bbv12I GWGCWC 3 cut(s) 126, 952, 1218
BbvCI CCTCAGC 1 cut(s) 200
BbvI GCAGC 6 cut(s) 157, 179, 200, 389, 727, 1135
BccI CCATC 2 cut(s) 1074, 1406
BciT130I CCWGG 2 cut(s) 45, 318
BclI TGATCA 2 cut(s) 88, 1090
BcoDI GTCTC 3 cut(s) 82, 521, 794
BfaI CTAG 1 cut(s) 992
BfoI RGCGCY 1 cut(s) 639
BfuAI ACCTGC 1 cut(s) 536
BisI GCNGC 8 cut(s) 5, 168, 171, 189, 378, 738, 741, 1124
BlsI GCNGC 8 cut(s) 6, 169, 172, 190, 379, 739, 742, 1125
Bme1390I CCNGG 2 cut(s) 45, 318
BmeRI GACNNNNNGTC 1 cut(s) 1166
BmeT110I CYCGRG 3 cut(s) 422, 703, 1435
BmgT120I GGNCC 2 cut(s) 145, 1338
BmiI GGNNCC 2 cut(s) 220, 1396
BmrFI CCNGG 2 cut(s) 45, 318
BmrI ACTGGG 1 cut(s) 1198
BmuI ACTGGG 1 cut(s) 1198
BplI GAGNNNNNCTC 2 cut(s) 1047, 1079
Bpu10I CCTNAGC 1 cut(s) 200
BpuEI CTTGAG 4 cut(s) 76, 314, 879, 1148
BsaI GGTCTC 1 cut(s) 794
BsaJI CCNNGG 1 cut(s) 772
BsaXI ACNNNNNCTCC 4 cut(s) 556, 586, 1124, 1154
Bsc4I CCNNNNNNNGG 3 cut(s) 307, 1346, 1423
Bse1I ACTGG 1 cut(s) 1193
Bse21I CCTNAGG 1 cut(s) 619
Bse3DI GCAATG 3 cut(s) 283, 301, 840
BseBI CCWGG 2 cut(s) 45, 318
BseDI CCNNGG 1 cut(s) 772
BseGI GGATG 1 cut(s) 611
BseLI CCNNNNNNNGG 3 cut(s) 307, 1346, 1423
BseMI GCAATG 3 cut(s) 283, 301, 840
BseMII CTCAG 4 cut(s) 191, 711, 891, 917
BseNI ACTGG 1 cut(s) 1193
BseRI GAGGAG 2 cut(s) 1145, 1208
BseSI GKGCMC 1 cut(s) 1218
BseXI GCAGC 6 cut(s) 157, 179, 200, 389, 727, 1135
BshFI GGCC 5 cut(s) 146, 282, 771, 912, 1339
BshNI GGYRCC 1 cut(s) 218
BsiHKAI GWGCWC 3 cut(s) 126, 952, 1218
BsiHKCI CYCGRG 3 cut(s) 422, 703, 1435
BslFI GGGAC 1 cut(s) 589
BslI CCNNNNNNNGG 3 cut(s) 307, 1346, 1423
BsmAI GTCTC 3 cut(s) 82, 521, 794
BsmFI GGGAC 1 cut(s) 589
BsmI GAATGC 2 cut(s) 507, 835
BsnI GGCC 5 cut(s) 146, 282, 771, 912, 1339
Bso31I GGTCTC 1 cut(s) 794
BsoBI CYCGRG 3 cut(s) 422, 703, 1435
Bsp1286I GDGCHC 3 cut(s) 126, 952, 1218
Bsp143I GATC 6 cut(s) 88, 466, 585, 760, 1021, 1090
BspACI CCGC 3 cut(s) 5, 274, 738
BspANI GGCC 5 cut(s) 146, 282, 771, 912, 1339
BspCNI CTCAG 4 cut(s) 192, 712, 890, 916
BspHI TCATGA 3 cut(s) 796, 1093, 1401
BspLI GGNNCC 2 cut(s) 220, 1396
BspMI ACCTGC 1 cut(s) 536
BspPI GGATC 1 cut(s) 593
BspT107I GGYRCC 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 794
BsrDI GCAATG 3 cut(s) 283, 301, 840
BsrI ACTGG 1 cut(s) 1193
BssECI CCNNGG 1 cut(s) 772
BssMI GATC 6 cut(s) 88, 466, 585, 760, 1021, 1090
BssT1I CCWWGG 1 cut(s) 772
Bst2UI CCWGG 2 cut(s) 45, 318
Bst4CI ACNGT 4 cut(s) 234, 384, 580, 684
Bst6I CTCTTC 2 cut(s) 249, 1252
BstAPI GCANNNNNTGC 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 9 cut(s) 200, 223, 619, 720, 854, 877, 903, 1202, 1345
BstENI CCTNNNNNAGG 2 cut(s) 305, 1421
BstF5I GGATG 1 cut(s) 611
BstH2I RGCGCY 1 cut(s) 639
BstHHI GCGC 1 cut(s) 638
BstKTI GATC 6 cut(s) 91, 469, 588, 763, 1024, 1093
BstMAI GTCTC 3 cut(s) 82, 521, 794
BstMBI GATC 6 cut(s) 88, 466, 585, 760, 1021, 1090
BstMWI GCNNNNNNNGC 5 cut(s) 164, 386, 434, 633, 746
BstNI CCWGG 2 cut(s) 45, 318
BstNSI RCATGY 2 cut(s) 594, 1178
BstSCI CCNGG 2 cut(s) 43, 316
BstSLI GKGCMC 1 cut(s) 1218
BstV1I GCAGC 6 cut(s) 157, 179, 200, 389, 727, 1135
Bsu36I CCTNAGG 1 cut(s) 619
BsuRI GGCC 5 cut(s) 146, 282, 771, 912, 1339
BtsCI GGATG 1 cut(s) 611
BtsI GCAGTG 1 cut(s) 634
BtsIMutI CAGTG 2 cut(s) 230, 634
BveI ACCTGC 1 cut(s) 536
Cac8I GCNNGC 1 cut(s) 543
CciI TCATGA 3 cut(s) 796, 1093, 1401
CfoI GCGC 1 cut(s) 638
Cfr13I GGNCC 2 cut(s) 145, 1338
CviAII CATG 8 cut(s) 409, 439, 591, 797, 979, 1094, 1175, 1402
DdeI CTNAG 9 cut(s) 200, 223, 619, 720, 854, 877, 903, 1202, 1345
DpnI GATC 6 cut(s) 90, 468, 587, 762, 1023, 1092
DpnII GATC 6 cut(s) 88, 466, 585, 760, 1021, 1090
DriI GACNNNNNGTC 1 cut(s) 1166
Eam1104I CTCTTC 2 cut(s) 249, 1252
Eam1105I GACNNNNNGTC 1 cut(s) 1166
EarI CTCTTC 2 cut(s) 249, 1252
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 772
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 794
Eco47III AGCGCT 1 cut(s) 637
Eco53kI GAGCTC 1 cut(s) 124
Eco57I CTGAAG 1 cut(s) 270
Eco81I CCTNAGG 1 cut(s) 619
Eco88I CYCGRG 3 cut(s) 422, 703, 1435
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 2 cut(s) 305, 1421
EcoO109I RGGNCCY 1 cut(s) 1338
EcoRII CCWGG 2 cut(s) 43, 316
EcoT14I CCWWGG 1 cut(s) 772
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 772
FaeI CATG 8 cut(s) 412, 442, 594, 800, 982, 1097, 1178, 1405
FalI AAGNNNNNCTT 2 cut(s) 777, 809
FaqI GGGAC 1 cut(s) 589
FatI CATG 8 cut(s) 408, 438, 590, 796, 978, 1093, 1174, 1401
FauNDI CATATG 2 cut(s) 106, 1008
FbaI TGATCA 2 cut(s) 88, 1090
FblI GTMKAC 2 cut(s) 365, 501
Fnu4HI GCNGC 8 cut(s) 5, 168, 171, 189, 378, 738, 741, 1124
FokI GGATG 1 cut(s) 598
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 8 cut(s) 5, 168, 171, 189, 378, 738, 741, 1124
FspBI CTAG 1 cut(s) 992
GlaI GCGC 1 cut(s) 637
GluI GCNGC 8 cut(s) 5, 168, 171, 189, 378, 738, 741, 1124
HaeII RGCGCY 1 cut(s) 639
HaeIII GGCC 5 cut(s) 146, 282, 771, 912, 1339
HhaI GCGC 1 cut(s) 638
Hin1II CATG 8 cut(s) 412, 442, 594, 800, 982, 1097, 1178, 1405
Hin6I GCGC 1 cut(s) 636
HinP1I GCGC 1 cut(s) 636
HincII GTYRAC 2 cut(s) 366, 717
HindII GTYRAC 2 cut(s) 366, 717
HindIII AAGCTT 1 cut(s) 786
HinfI GANTC 6 cut(s) 552, 644, 656, 662, 725, 1433
HphI GGTGA 1 cut(s) 950
Hpy166II GTNNAC 4 cut(s) 366, 502, 717, 1216
Hpy188I TCNGA 7 cut(s) 250, 466, 557, 661, 964, 1090, 1469
Hpy8I GTNNAC 4 cut(s) 366, 502, 717, 1216
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 7 cut(s) 61, 365, 803, 1200, 1351, 1434, 1462
HpyCH4III ACNGT 4 cut(s) 234, 384, 580, 684
HpyCH4V TGCA 8 cut(s) 110, 173, 294, 389, 507, 833, 1216, 1329
HpyF10VI GCNNNNNNNGC 5 cut(s) 164, 386, 434, 633, 746
HpyF3I CTNAG 9 cut(s) 200, 223, 619, 720, 854, 877, 903, 1202, 1345
Hsp92II CATG 8 cut(s) 412, 442, 594, 800, 982, 1097, 1178, 1405
HspAI GCGC 1 cut(s) 636
Ksp22I TGATCA 2 cut(s) 88, 1090
Kzo9I GATC 6 cut(s) 88, 466, 585, 760, 1021, 1090
Lsp1109I GCAGC 6 cut(s) 157, 179, 200, 389, 727, 1135
MaeI CTAG 1 cut(s) 992
MaeIII GTNAC 4 cut(s) 524, 1079, 1237, 1477
MalI GATC 6 cut(s) 90, 468, 587, 762, 1023, 1092
MboI GATC 6 cut(s) 88, 466, 585, 760, 1021, 1090
MboII GAAGA 9 cut(s) 263, 266, 686, 773, 827, 934, 1109, 1239, 1280
MhlI GDGCHC 3 cut(s) 126, 952, 1218
MlyI GAGTC 2 cut(s) 653, 1427
MmeI TCCRAC 2 cut(s) 105, 666
MroXI GAANNNNTTC 2 cut(s) 258, 819
MseI TTAA 5 cut(s) 1103, 1136, 1224, 1410, 1419
MspA1I CMGCKG 2 cut(s) 170, 740
MspR9I CCNGG 2 cut(s) 45, 318
Mva1269I GAATGC 2 cut(s) 507, 835
MvaI CCWGG 2 cut(s) 45, 318
MwoI GCNNNNNNNGC 5 cut(s) 164, 386, 434, 633, 746
NdeI CATATG 2 cut(s) 106, 1008
NdeII GATC 6 cut(s) 88, 466, 585, 760, 1021, 1090
NlaIII CATG 8 cut(s) 412, 442, 594, 800, 982, 1097, 1178, 1405
NlaIV GGNNCC 2 cut(s) 220, 1396
NmuCI GTSAC 2 cut(s) 1079, 1477
NspI RCATGY 2 cut(s) 594, 1178
PaeR7I CTCGAG 3 cut(s) 422, 703, 1435
PagI TCATGA 3 cut(s) 796, 1093, 1401
PaqCI CACCTGC 1 cut(s) 536
PctI GAATGC 2 cut(s) 507, 835
PdmI GAANNNNTTC 2 cut(s) 258, 819
PfeI GAWTC 4 cut(s) 552, 656, 662, 725
PkrI GCNGC 8 cut(s) 6, 169, 172, 190, 379, 739, 742, 1125
PleI GAGTC 2 cut(s) 652, 1427
PpsI GAGTC 2 cut(s) 652, 1427
PshBI ATTAAT 1 cut(s) 1103
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 2 cut(s) 43, 316
PspGI CCWGG 2 cut(s) 43, 316
PspN4I GGNNCC 2 cut(s) 220, 1396
PspPI GGNCC 2 cut(s) 145, 1338
PspXI VCTCGAGB 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 170
SacI GAGCTC 1 cut(s) 126
SalI GTCGAC 1 cut(s) 364
SaqAI TTAA 5 cut(s) 1103, 1136, 1224, 1410, 1419
SatI GCNGC 8 cut(s) 5, 168, 171, 189, 378, 738, 741, 1124
Sau3AI GATC 6 cut(s) 88, 466, 585, 760, 1021, 1090
Sau96I GGNCC 2 cut(s) 145, 1338
SchI GAGTC 2 cut(s) 653, 1427
ScrFI CCNGG 2 cut(s) 45, 318
SduI GDGCHC 3 cut(s) 126, 952, 1218
Sfr274I CTCGAG 3 cut(s) 422, 703, 1435
SlaI CTCGAG 3 cut(s) 422, 703, 1435
SmlI CTYRAG 7 cut(s) 55, 329, 422, 703, 894, 1127, 1435
SmoI CTYRAG 7 cut(s) 55, 329, 422, 703, 894, 1127, 1435
SsiI CCGC 3 cut(s) 5, 274, 738
SspMI CTAG 1 cut(s) 992
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 2 cut(s) 43, 316
StyI CCWWGG 1 cut(s) 772
TaaI ACNGT 4 cut(s) 234, 384, 580, 684
TaqI TCGA 6 cut(s) 365, 423, 488, 704, 1016, 1436
TauI GCSGC 2 cut(s) 7, 740
TfiI GAWTC 4 cut(s) 552, 656, 662, 725
Tru1I TTAA 5 cut(s) 1103, 1136, 1224, 1410, 1419
Tru9I TTAA 5 cut(s) 1103, 1136, 1224, 1410, 1419
TscAI CASTG 2 cut(s) 237, 634
TseFI GTSAC 2 cut(s) 1079, 1477
TseI GCWGC 6 cut(s) 167, 170, 188, 377, 740, 1123
Tsp45I GTSAC 2 cut(s) 1079, 1477
TspDTI ATGAA 9 cut(s) 153, 455, 546, 654, 669, 686, 785, 995, 1110
TspRI CASTG 2 cut(s) 237, 634
VneI GTGCAC 1 cut(s) 1214
VspI ATTAAT 1 cut(s) 1103
XagI CCTNNNNNAGG 2 cut(s) 305, 1421
XapI RAATTY 4 cut(s) 13, 415, 965, 1031
XceI RCATGY 2 cut(s) 594, 1178
XhoI CTCGAG 3 cut(s) 422, 703, 1435
XmiI GTMKAC 2 cut(s) 365, 501
XmnI GAANNNNTTC 2 cut(s) 258, 819
XspI CTAG 1 cut(s) 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.