Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0013396

Physical Location & Seq

Genomic Coordinates Reverse (-)

2958239 .. 2959226

Gene Structure 988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCAGCTGCAAGCTGCTTCAAGCATGGAACAATACTTCCCGTCTCCGCGAATCTCCGGCACAAGCAGCCACCGCCTCGAAGCAGCTTCATCGGAAACAATGAGCTGAAGGGAAACATAAGCATGATGCTATTGATGGGATTGAGTGGGGGACATGGAAATGGTAAGGGATCCAAGAGGGCTGGGATGATAAGGTGTGGGAGAGGGATAGAGGACTTCATAGGAGGGGACTTGGTGAGGTTTGATCTTGGCCGTTGGCTTTCTGACGTGGAAGAGCACAAGGCCCTCGCCGTCTACTCTCCCCACGAGGGAGGGTACGAGGGCCGCTACCTTAACCGCCTGACTTACCAAGGTTACTATTTCCTCGACCTTAGCGCGCGAGGGCTTGGTGATCCCGAGACCACCCTCACCAAGGTTCACCCTGTTTGTCCGCCTCATCTAGGGAAGCAGCCCATATCAAGATGGTACTTTCCACCAGAGGTGGATTACAGGCTTGCCGCTCTGCCTCCAAAAGCCAAAGGCCTTGTAGTCTGGATCATTGAAGCCAAGGTTCTGTCGAAGGCTGAATTGCAGTTTCTTGCTCTGCTTCCCACGCTACGTCCCAAAGTGAGGGTCATCGCCGAGTGTGGAAACTGGAGGAAATTTGTGTGGAAGCCACTCAAAGAAATTTCGGGACTAACTGCTAACGAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009526 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009620 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010257 GO:0010258 GO:0010598 GO:0016020 GO:0016043 GO:0022607 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0034622 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055035 GO:0065003 GO:0071840 GO:0098542 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NdhN

Protein Analysis

232

Amino Acids

25.59

Weight (kDa)

9.59

Isoelectric Point (pI)

46.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NdhN	PF11909	85 - 222	2.3e-55	NADH-quinone oxidoreductase cyanobacterial subunit N

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013396)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58260 AT5G58260
fragaria_vesca	FvH4_3g41140
malus_domestica	MD03G1047200.v1.1 MD11G1049700.v1.1
prunus_persica	Prupe.6G038400_v2.0.a1
pyrus_communis	pycom03g03720 pycom11g04030
rosa_chinensis	RchiOBHm_Chr5g0073911
rosa_laevigata	RLG00000036424
rosa_multiflora	Rmu_sc0000470.1_g000017
rosa_roxburghii	Rroxscaffold_1G00007460
rosa_rugosa	Rorug05G0427300
rosa_samantha	Rh5AG484300 Rh5BG505000 Rh5CG528800 Rh5DG517300
rosa_wichuraiana	Rw5G045020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	500
AccI	GTMKAC	1 cut(s)	294
AccII	CGCG	3 cut(s)	50, 377, 379
AciI	CCGC	6 cut(s)	48, 74, 325, 337, 431, 498
AclWI	GGATC	4 cut(s)	165, 178, 386, 542
AcoI	YGGCCR	1 cut(s)	250
AcsI	RAATTY	2 cut(s)	641, 666
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	2 cut(s)	317, 467
AfiI	CCNNNNNNNGG	4 cut(s)	308, 412, 440, 609
AgsI	TTSAA	2 cut(s)	22, 542
AjiI	CACGTC	1 cut(s)	268
AloI	GAACNNNNNNTCC	2 cut(s)	22, 54
AluBI	AGCT	4 cut(s)	8, 15, 87, 106
AluI	AGCT	4 cut(s)	8, 15, 87, 106
Alw21I	GWGCWC	1 cut(s)	279
Alw26I	GTCTC	2 cut(s)	49, 392
AlwI	GGATC	4 cut(s)	165, 178, 386, 542
Ama87I	CYCGRG	1 cut(s)	395
AoxI	GGCC	4 cut(s)	250, 282, 322, 520
ApeKI	GCWGC	6 cut(s)	5, 8, 15, 67, 84, 448
ApoI	RAATTY	2 cut(s)	641, 666
ArsI	GACNNNNNNTTYG	2 cut(s)	597, 629
AspLEI	GCGC	2 cut(s)	377, 379
AspS9I	GGNCC	2 cut(s)	283, 322
AsuHPI	GGTGA	4 cut(s)	247, 400, 401, 410
AvaI	CYCGRG	1 cut(s)	395
BamHI	GGATCC	1 cut(s)	170
BauI	CACGAG	1 cut(s)	305
Bbv12I	GWGCWC	1 cut(s)	279
BbvI	GCAGC	5 cut(s)	2, 17, 79, 96, 460
BccI	CCATC	2 cut(s)	130, 456
BceAI	ACGGC	2 cut(s)	237, 275
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BcoDI	GTCTC	2 cut(s)	49, 392
BfaI	CTAG	1 cut(s)	440
BisI	GCNGC	8 cut(s)	6, 9, 16, 68, 85, 325, 449, 498
BlsI	GCNGC	8 cut(s)	7, 10, 17, 69, 86, 326, 450, 499
BmeT110I	CYCGRG	1 cut(s)	395
BmgBI	CACGTC	1 cut(s)	268
BmgT120I	GGNCC	2 cut(s)	283, 322
BmiI	GGNNCC	1 cut(s)	172
BmsI	GCATC	1 cut(s)	117
BpmI	CTGGAG	1 cut(s)	655
Bpu10I	CCTNAGC	1 cut(s)	371
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	349, 411, 546
Bsc4I	CCNNNNNNNGG	4 cut(s)	308, 412, 440, 609
Bse1I	ACTGG	1 cut(s)	638
BseDI	CCNNGG	3 cut(s)	349, 411, 546
BseGI	GGATG	1 cut(s)	192
BseLI	CCNNNNNNNGG	4 cut(s)	308, 412, 440, 609
BseNI	ACTGG	1 cut(s)	638
BsePI	GCGCGC	1 cut(s)	375
BseXI	GCAGC	5 cut(s)	2, 17, 79, 96, 460
BseYI	CCCAGC	1 cut(s)	182
Bsh1236I	CGCG	3 cut(s)	50, 377, 379
BshFI	GGCC	4 cut(s)	252, 284, 324, 522
BsiHKAI	GWGCWC	1 cut(s)	279
BsiHKCI	CYCGRG	1 cut(s)	395
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	4 cut(s)	165, 242, 585, 687
BslI	CCNNNNNNNGG	4 cut(s)	308, 412, 440, 609
BsmAI	GTCTC	2 cut(s)	49, 392
BsmBI	CGTCTC	1 cut(s)	49
BsmFI	GGGAC	4 cut(s)	165, 242, 585, 687
BsnI	GGCC	4 cut(s)	252, 284, 324, 522
Bso31I	GGTCTC	1 cut(s)	392
BsoBI	CYCGRG	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	279
Bsp143I	GATC	4 cut(s)	170, 244, 391, 534
BspACI	CCGC	6 cut(s)	48, 74, 325, 337, 431, 498
BspANI	GGCC	4 cut(s)	252, 284, 324, 522
BspFNI	CGCG	3 cut(s)	50, 377, 379
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	4 cut(s)	165, 178, 386, 542
BspQI	GCTCTTC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	392
BsrBI	CCGCTC	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	638
BssECI	CCNNGG	3 cut(s)	349, 411, 546
BssHII	GCGCGC	1 cut(s)	375
BssMI	GATC	4 cut(s)	170, 244, 391, 534
BssSI	CACGAG	1 cut(s)	305
BssT1I	CCWWGG	3 cut(s)	349, 411, 546
Bst2BI	CACGAG	1 cut(s)	305
Bst6I	CTCTTC	1 cut(s)	267
BstC8I	GCNNGC	3 cut(s)	13, 377, 495
BstDEI	CTNAG	1 cut(s)	371
BstENI	CCTNNNNNAGG	2 cut(s)	410, 438
BstF5I	GGATG	1 cut(s)	192
BstFNI	CGCG	3 cut(s)	50, 377, 379
BstHHI	GCGC	2 cut(s)	377, 379
BstKTI	GATC	4 cut(s)	173, 247, 394, 537
BstMAI	GTCTC	2 cut(s)	49, 392
BstMBI	GATC	4 cut(s)	170, 244, 391, 534
BstMWI	GCNNNNNNNGC	4 cut(s)	67, 73, 592, 689
BstUI	CGCG	3 cut(s)	50, 377, 379
BstV1I	GCAGC	5 cut(s)	2, 17, 79, 96, 460
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	4 cut(s)	252, 284, 324, 522
BtgZI	GCGATG	1 cut(s)	601
BtrI	CACGTC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	192
Cac8I	GCNNGC	3 cut(s)	13, 377, 495
CfoI	GCGC	2 cut(s)	377, 379
Cfr13I	GGNCC	2 cut(s)	283, 322
Csp6I	GTAC	2 cut(s)	316, 466
CviAII	CATG	4 cut(s)	26, 124, 155, 693
CviQI	GTAC	2 cut(s)	316, 466
DdeI	CTNAG	1 cut(s)	371
DpnI	GATC	4 cut(s)	172, 246, 393, 536
DpnII	GATC	4 cut(s)	170, 244, 391, 534
EaeI	YGGCCR	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
EciI	GGCGGA	1 cut(s)	420
Eco130I	CCWWGG	3 cut(s)	349, 411, 546
Eco147I	AGGCCT	1 cut(s)	522
Eco31I	GGTCTC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	395
EcoNI	CCTNNNNNAGG	2 cut(s)	410, 438
EcoO109I	RGGNCCY	1 cut(s)	283
EcoT14I	CCWWGG	3 cut(s)	349, 411, 546
ErhI	CCWWGG	3 cut(s)	349, 411, 546
Esp3I	CGTCTC	1 cut(s)	49
FaeI	CATG	4 cut(s)	29, 127, 158, 696
FaiI	YATR	7 cut(s)	27, 119, 125, 156, 221, 455, 694
FaqI	GGGAC	4 cut(s)	165, 242, 585, 687
FatI	CATG	4 cut(s)	25, 123, 154, 692
FblI	GTMKAC	1 cut(s)	294
Fnu4HI	GCNGC	8 cut(s)	6, 9, 16, 68, 85, 325, 449, 498
FokI	GGATG	1 cut(s)	199
Fsp4HI	GCNGC	8 cut(s)	6, 9, 16, 68, 85, 325, 449, 498
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	2 cut(s)	376, 378
GluI	GCNGC	8 cut(s)	6, 9, 16, 68, 85, 325, 449, 498
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	655
HaeIII	GGCC	4 cut(s)	252, 284, 324, 522
HapII	CCGG	1 cut(s)	58
HhaI	GCGC	2 cut(s)	377, 379
Hin1II	CATG	4 cut(s)	29, 127, 158, 696
Hin6I	GCGC	2 cut(s)	375, 377
HinP1I	GCGC	2 cut(s)	375, 377
HinfI	GANTC	1 cut(s)	52
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	4 cut(s)	247, 400, 401, 410
Hpy166II	GTNNAC	2 cut(s)	295, 418
Hpy188I	TCNGA	2 cut(s)	95, 265
Hpy188III	TCNNGA	4 cut(s)	395, 459, 532, 672
Hpy8I	GTNNAC	2 cut(s)	295, 418
HpyAV	CCTTC	2 cut(s)	103, 553
HpyCH4IV	ACGT	2 cut(s)	267, 598
HpyCH4V	TGCA	2 cut(s)	11, 571
HpyF10VI	GCNNNNNNNGC	4 cut(s)	67, 73, 592, 689
HpyF3I	CTNAG	1 cut(s)	371
HpySE526I	ACGT	2 cut(s)	267, 598
Hsp92II	CATG	4 cut(s)	29, 127, 158, 696
HspAI	GCGC	2 cut(s)	375, 377
Kzo9I	GATC	4 cut(s)	170, 244, 391, 534
LguI	GCTCTTC	1 cut(s)	267
LpnPI	CCDG	8 cut(s)	71, 168, 353, 435, 475, 489, 517, 619
Lsp1109I	GCAGC	5 cut(s)	2, 17, 79, 96, 460
LweI	GCATC	1 cut(s)	117
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	2 cut(s)	267, 598
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	4 cut(s)	172, 246, 393, 536
MbiI	CCGCTC	1 cut(s)	500
MboI	GATC	4 cut(s)	170, 244, 391, 534
MboII	GAAGA	1 cut(s)	284
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	279
MluCI	AATT	3 cut(s)	566, 641, 666
MseI	TTAA	1 cut(s)	333
MslI	CAYNNNNRTG	2 cut(s)	122, 159
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	58
MvnI	CGCG	3 cut(s)	50, 377, 379
MwoI	GCNNNNNNNGC	4 cut(s)	67, 73, 592, 689
NdeII	GATC	4 cut(s)	170, 244, 391, 534
NlaIII	CATG	4 cut(s)	29, 127, 158, 696
NlaIV	GGNNCC	1 cut(s)	172
NmeAIII	GCCGAG	1 cut(s)	646
PauI	GCGCGC	1 cut(s)	375
PceI	AGGCCT	1 cut(s)	522
PciSI	GCTCTTC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	8 cut(s)	7, 10, 17, 69, 86, 326, 450, 499
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	172
PspPI	GGNCC	2 cut(s)	283, 322
PsuI	RGATCY	1 cut(s)	170
PteI	GCGCGC	1 cut(s)	375
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	2 cut(s)	317, 467
RsaNI	GTAC	2 cut(s)	316, 466
RseI	CAYNNNNRTG	2 cut(s)	122, 159
SapI	GCTCTTC	1 cut(s)	267
SaqAI	TTAA	1 cut(s)	333
SatI	GCNGC	8 cut(s)	6, 9, 16, 68, 85, 325, 449, 498
Sau3AI	GATC	4 cut(s)	170, 244, 391, 534
Sau96I	GGNCC	2 cut(s)	283, 322
SduI	GDGCHC	1 cut(s)	279
SfaNI	GCATC	1 cut(s)	117
SmiMI	CAYNNNNRTG	2 cut(s)	122, 159
Sse9I	AATT	3 cut(s)	566, 641, 666
SseBI	AGGCCT	1 cut(s)	522
SsiI	CCGC	6 cut(s)	48, 74, 325, 337, 431, 498
SspMI	CTAG	1 cut(s)	440
StuI	AGGCCT	1 cut(s)	522
StyI	CCWWGG	3 cut(s)	349, 411, 546
TaiI	ACGT	2 cut(s)	270, 601
TaqI	TCGA	3 cut(s)	79, 366, 557
TasI	AATT	3 cut(s)	566, 641, 666
TauI	GCSGC	2 cut(s)	327, 500
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	333
Tru9I	TTAA	1 cut(s)	333
TseI	GCWGC	6 cut(s)	5, 8, 15, 67, 84, 448
TspDTI	ATGAA	2 cut(s)	79, 208
XagI	CCTNNNNNAGG	2 cut(s)	410, 438
XapI	RAATTY	2 cut(s)	641, 666
XmiI	GTMKAC	1 cut(s)	294
XspI	CTAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.