Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0019315

Physical Location & Seq

Genomic Coordinates Forward (+)

3896138 .. 3897795

Gene Structure 1658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g04990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTCTTCGAGTTCGAGCCCAGTCGCTGGCTACTATTCTGACTCAATATTTCTTCTCTCTCCGTGTAAATGTTGCAGCTTGGGTAATTTTTATTCTGTTGACGTGGGAATTAATGGATCAAAGGTGGAGAGTTTCTGGATTTTCTCAGCACCGCCGGATTCCGGTGGTAGCGGTGGTGTTTCTTTCACTGTTTCATCAGAATCTAAGCCCGTGCTGGCAGGTTTGGCGTTGTTGAGGTTCAGGGACAGGGTGGTGACAGACCCTTTTGGGGCTTTATCGAATTGGAACAACAACGGTGGAGAAAATGATCATTGTTCCTGGTTCGGGGTGGAGTGCTCGGATGGAAAAGTGGTCATCTTAAATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_8 Pkinase_Tyr

Protein Analysis

123

Amino Acids

12.87

Weight (kDa)

4.65

Isoelectric Point (pI)

43.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019315)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g04990
rosa_chinensis	RchiOBHm_Chr4g0424991 RchiOBHm_Chr7g0197371
rosa_roxburghii	Rroxscaffold_1G00042530 Rroxscaffold_2G00117410 Rroxscaffold_5G00341270
rosa_samantha	Rh1BG333000 Rh1DG364200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	209
AccB7I	CCANNNNNTGG	1 cut(s)	26
AciI	CCGC	2 cut(s)	152, 171
AclWI	GGATC	1 cut(s)	124
AfiI	CCNNNNNNNGG	4 cut(s)	26, 161, 268, 324
AjiI	CACGTC	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	1 cut(s)	78
AluI	AGCT	1 cut(s)	78
Alw21I	GWGCWC	1 cut(s)	338
AlwI	GGATC	1 cut(s)	124
AlwNI	CAGNNNCTG	1 cut(s)	26
ApeKI	GCWGC	1 cut(s)	75
AseI	ATTAAT	1 cut(s)	111
AsuHPI	GGTGA	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	1 cut(s)	319
BclI	TGATCA	1 cut(s)	307
BfuAI	ACCTGC	1 cut(s)	209
BisI	GCNGC	1 cut(s)	76
BlsI	GCNGC	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	319
BmgBI	CACGTC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	319
BmrI	ACTGGG	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	14
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 161, 268, 324
Bse1I	ACTGG	1 cut(s)	20
BseBI	CCWGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	346
BseLI	CCNNNNNNNGG	4 cut(s)	26, 161, 268, 324
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	155, 162
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	4 cut(s)	26, 161, 268, 324
BsmFI	GGGAC	1 cut(s)	257
Bsp1286I	GDGCHC	2 cut(s)	20, 338
Bsp143I	GATC	2 cut(s)	116, 307
BspACI	CCGC	2 cut(s)	152, 171
BspCNI	CTCAG	1 cut(s)	158
BspMI	ACCTGC	1 cut(s)	209
BspPI	GGATC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	116, 307
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	2 cut(s)	190, 296
BstC8I	GCNNGC	2 cut(s)	28, 216
BstDEI	CTNAG	2 cut(s)	145, 204
BstF5I	GGATG	1 cut(s)	346
BstKTI	GATC	2 cut(s)	119, 310
BstMBI	GATC	2 cut(s)	116, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNI	CCWGG	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	87
BtrI	CACGTC	1 cut(s)	103
BtsCI	GGATG	1 cut(s)	346
BtsIMutI	CAGTG	1 cut(s)	186
BveI	ACCTGC	1 cut(s)	209
Cac8I	GCNNGC	2 cut(s)	28, 216
CaiI	CAGNNNCTG	1 cut(s)	26
CspCI	CAANNNNNGTGG	2 cut(s)	277, 312
CviJI	RGCY	5 cut(s)	18, 30, 78, 208, 272
CviKI_1	RGCY	5 cut(s)	18, 30, 78, 208, 272
DdeI	CTNAG	2 cut(s)	145, 204
DpnI	GATC	2 cut(s)	118, 309
DpnII	GATC	2 cut(s)	116, 307
Eco24I	GRGCYC	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	317
EcoT38I	GRGCYC	1 cut(s)	20
FaqI	GGGAC	1 cut(s)	257
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	76
FokI	GGATG	1 cut(s)	353
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	76
GluI	GCNGC	1 cut(s)	76
HapII	CCGG	2 cut(s)	155, 162
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	3 cut(s)	41, 158, 200
HpaII	CCGG	2 cut(s)	155, 162
HphI	GGTGA	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	3 cut(s)	40, 199, 340
Hpy188III	TCNNGA	1 cut(s)	136
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4III	ACNGT	2 cut(s)	190, 296
HpyCH4IV	ACGT	1 cut(s)	102
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	2 cut(s)	145, 204
HpySE526I	ACGT	1 cut(s)	102
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	116, 307
Lsp1109I	GCAGC	1 cut(s)	87
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	253
MalI	GATC	2 cut(s)	118, 309
MboI	GATC	2 cut(s)	116, 307
MboII	GAAGA	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	20, 338
MluCI	AATT	3 cut(s)	85, 108, 280
MlyI	GAGTC	1 cut(s)	35
MnlI	CCTC	1 cut(s)	228
MseI	TTAA	3 cut(s)	111, 359, 367
MspI	CCGG	2 cut(s)	155, 162
MspR9I	CCNGG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	2 cut(s)	116, 307
NmuCI	GTSAC	1 cut(s)	253
PfeI	GAWTC	2 cut(s)	158, 200
PflMI	CCANNNNNTGG	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	77
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PshBI	ATTAAT	1 cut(s)	111
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PstNI	CAGNNNCTG	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	111, 359, 367
SatI	GCNGC	1 cut(s)	76
Sau3AI	GATC	2 cut(s)	116, 307
SchI	GAGTC	1 cut(s)	35
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	20, 338
SetI	ASST	5 cut(s)	80, 105, 126, 223, 239
Sse9I	AATT	3 cut(s)	85, 108, 280
SsiI	CCGC	2 cut(s)	152, 171
SspI	AATATT	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	190, 296
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	3 cut(s)	8, 14, 278
TasI	AATT	3 cut(s)	85, 108, 280
TfiI	GAWTC	2 cut(s)	158, 200
Tru1I	TTAA	3 cut(s)	111, 359, 367
Tru9I	TTAA	3 cut(s)	111, 359, 367
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	253
TseI	GCWGC	1 cut(s)	75
Tsp45I	GTSAC	1 cut(s)	253
TspDTI	ATGAA	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	51
TspRI	CASTG	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	26
VspI	ATTAAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.