Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0019315

Physical Location & Seq

Genomic Coordinates Forward (+)

60777873 .. 60794822

Gene Structure 16950 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGATCGGTACCAGAGAGTGGAGAAGCCAAGAGCAGAGACGCCAATTGATGAGAATGAGATTAGGATTACGAGCCAAGGGAGGATGCGAAACTACATCACTTACGCCATGACTCTACTTCAGTGGAGCCTGTTGATTAGTATGTTTAAATTTGTTTCCACACTTTCTGATTTTGGACTTGCCAAAGATGGCCCGGAGGGTGATAAAACTCATGTCTCCACACGTGTGATGGGAACTTATGGTTATGCAGCTCCAGAATATGTAATGACTGGACATCTTACATCGAGGAGTGATGTCTATAGTTTTGGCGTAGTTTTCAAGGCTATGGGAAGAGCTATCAACAAGACTGTGACGATTGTGGAGCTAATTAAGGGTGGAGGCAGAAAAGAAGAAAAAAAGGTGGAGGAGAAAGGAGTTTTGATTAGGGTTCTTCGTTTTGGGGATTTCGAGCAACTCGATTTAGGGCTTTCTCGAAGCAATCGATTTGGTATTCCATGGCTCCACACCAACCTCCGCATCCCACTCACAAGTAAATCTGCTATCCATTCAAACTATCTAAGCTCCCGGCTCCTAGCCCAAGCCAGATCCGTAGCCTCCAAGTCCTCCCTTGCCAAGTTTAGCTTTGGAGTTTTAAAGAGAGTAGTGACTGACCCATTTGGTGGTTTGTCGAATTGGAATGATGAAGACGGAGATATTGACCGTTGCTCTTGGTTTGGGGTTGAATGCTTAGATGGAAAAATTGTGGTCTTAGATGCCAGTTTCAAGAATAAGTCTGAAATAAATTCGGTGATTGAGGTTGTTGAGGAAATCATTATATTTCTGAATAAGAAAAAAGACCAACTGGAAGCCCAAGCAAGGGAGAGGAGAGGCAATAGTCAATATACCAAAGCAGACATAGGTATGATGCGAAATGAGTGGGCAAAGTATGTCGTGAAGGCGTATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

35.66

Weight (kDa)

9.36

Isoelectric Point (pI)

30.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	53 - 106	1.6e-08	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	54 - 109	3.5e-08	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0019315)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g04990
rosa_chinensis	RchiOBHm_Chr4g0424991 RchiOBHm_Chr7g0197371
rosa_roxburghii	Rroxscaffold_1G00042530 Rroxscaffold_2G00117410 Rroxscaffold_5G00341270
rosa_samantha	Rh1BG333000 Rh1DG364200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	9
AccB1I	GGYRCC	1 cut(s)	9
AccB7I	CCANNNNNTGG	2 cut(s)	19, 659
AciI	CCGC	1 cut(s)	514
AclWI	GGATC	2 cut(s)	12, 579
AcsI	RAATTY	2 cut(s)	149, 781
AcuI	CTGAAG	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	224
AcyI	GRCGYC	1 cut(s)	41
AfaI	GTAC	1 cut(s)	11
AfiI	CCNNNNNNNGG	4 cut(s)	19, 659, 855, 856
AflIII	ACRYGT	2 cut(s)	221, 223
AgsI	TTSAA	4 cut(s)	319, 549, 722, 763
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	5 cut(s)	251, 335, 364, 561, 621
AluI	AGCT	5 cut(s)	251, 335, 364, 561, 621
Alw26I	GTCTC	2 cut(s)	32, 220
AlwI	GGATC	2 cut(s)	12, 579
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	149, 781
Asp718I	GGTACC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	191
AsuC2I	CCSGG	2 cut(s)	194, 565
AsuHPI	GGTGA	2 cut(s)	212, 799
BanI	GGYRCC	1 cut(s)	9
BbrPI	CACGTG	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	690
BbvI	GCAGC	1 cut(s)	260
BccI	CCATC	3 cut(s)	182, 223, 725
BcnI	CCSGG	2 cut(s)	194, 565
BcoDI	GTCTC	2 cut(s)	32, 220
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	298
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
Bme1390I	CCNGG	2 cut(s)	194, 565
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	4 cut(s)	11, 128, 500, 569
BmrFI	CCNGG	2 cut(s)	194, 565
BmsI	GCATC	4 cut(s)	75, 525, 742, 894
BpiI	GAAGAC	1 cut(s)	690
BpmI	CTGGAG	1 cut(s)	237
BpuMI	CCSGG	2 cut(s)	194, 565
Bsa29I	ATCGAT	1 cut(s)	481
BsaAI	YACGTR	1 cut(s)	224
BsaHI	GRCGYC	1 cut(s)	41
BsaJI	CCNNGG	2 cut(s)	76, 494
Bsc4I	CCNNNNNNNGG	4 cut(s)	19, 659, 855, 856
Bse1I	ACTGG	3 cut(s)	274, 756, 846
BseCI	ATCGAT	1 cut(s)	481
BseDI	CCNNGG	2 cut(s)	76, 494
BseGI	GGATG	2 cut(s)	90, 516
BseLI	CCNNNNNNNGG	4 cut(s)	19, 659, 855, 856
BseNI	ACTGG	3 cut(s)	274, 756, 846
BseRI	GAGGAG	3 cut(s)	301, 419, 877
BseXI	GCAGC	1 cut(s)	260
BshFI	GGCC	1 cut(s)	192
BshNI	GGYRCC	1 cut(s)	9
BshVI	ATCGAT	1 cut(s)	481
BsiSI	CCGG	2 cut(s)	194, 565
BslI	CCNNNNNNNGG	4 cut(s)	19, 659, 855, 856
BsmAI	GTCTC	2 cut(s)	32, 220
BsmBI	CGTCTC	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	728
BsnI	GGCC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	4, 584
Bsp19I	CCATGG	1 cut(s)	494
BspACI	CCGC	1 cut(s)	514
BspANI	GGCC	1 cut(s)	192
BspDI	ATCGAT	1 cut(s)	481
BspLI	GGNNCC	4 cut(s)	11, 128, 500, 569
BspPI	GGATC	2 cut(s)	12, 579
BspQI	GCTCTTC	1 cut(s)	325
BspT107I	GGYRCC	1 cut(s)	9
BsrI	ACTGG	3 cut(s)	274, 756, 846
BssECI	CCNNGG	2 cut(s)	76, 494
BssMI	GATC	2 cut(s)	4, 584
BssNI	GRCGYC	1 cut(s)	41
BssT1I	CCWWGG	2 cut(s)	76, 494
Bst4CI	ACNGT	2 cut(s)	349, 701
Bst6I	CTCTTC	1 cut(s)	325
BstACI	GRCGYC	1 cut(s)	41
BstBAI	YACGTR	1 cut(s)	224
BstDEI	CTNAG	3 cut(s)	557, 727, 748
BstDSI	CCRYGG	1 cut(s)	494
BstF5I	GGATG	2 cut(s)	90, 516
BstKTI	GATC	2 cut(s)	7, 587
BstMAI	GTCTC	2 cut(s)	32, 220
BstMBI	GATC	2 cut(s)	4, 584
BstSCI	CCNGG	2 cut(s)	192, 563
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	1 cut(s)	260
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	1 cut(s)	584
BstYI	RGATCY	1 cut(s)	584
Bsu15I	ATCGAT	1 cut(s)	481
BsuRI	GGCC	1 cut(s)	192
BsuTUI	ATCGAT	1 cut(s)	481
BtgI	CCRYGG	1 cut(s)	494
BtsCI	GGATG	2 cut(s)	90, 516
BtsIMutI	CAGTG	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	191
ClaI	ATCGAT	1 cut(s)	481
CseI	GACGC	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	3 cut(s)	109, 212, 495
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	3 cut(s)	557, 727, 748
DpnI	GATC	2 cut(s)	6, 586
DpnII	GATC	2 cut(s)	4, 584
DraI	TTTAAA	2 cut(s)	148, 633
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
Eco130I	CCWWGG	2 cut(s)	76, 494
Eco57I	CTGAAG	1 cut(s)	104
Eco72I	CACGTG	1 cut(s)	224
EcoT14I	CCWWGG	2 cut(s)	76, 494
ErhI	CCWWGG	2 cut(s)	76, 494
Esp3I	CGTCTC	1 cut(s)	32
FaeI	CATG	3 cut(s)	112, 215, 498
FalI	AAGNNNNNCTT	2 cut(s)	605, 637
FatI	CATG	3 cut(s)	108, 211, 494
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	2 cut(s)	97, 503
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	2 cut(s)	194, 565
HgaI	GACGC	1 cut(s)	49
Hin1I	GRCGYC	1 cut(s)	41
Hin1II	CATG	3 cut(s)	112, 215, 498
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	2 cut(s)	194, 565
HphI	GGTGA	2 cut(s)	212, 799
Hpy188I	TCNGA	3 cut(s)	169, 775, 822
Hpy188III	TCNNGA	4 cut(s)	254, 471, 763, 931
HpyAV	CCTTC	1 cut(s)	928
HpyCH4III	ACNGT	2 cut(s)	349, 701
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	1 cut(s)	248
HpyF3I	CTNAG	3 cut(s)	557, 727, 748
HpySE526I	ACGT	1 cut(s)	223
Hsp92I	GRCGYC	1 cut(s)	41
Hsp92II	CATG	3 cut(s)	112, 215, 498
KpnI	GGTACC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	4, 584
LguI	GCTCTTC	1 cut(s)	325
LmnI	GCTCC	6 cut(s)	126, 256, 361, 504, 566, 573
LpnPI	CCDG	9 cut(s)	26, 143, 207, 255, 267, 578, 595, 769, 827
Lsp1109I	GCAGC	1 cut(s)	260
LweI	GCATC	4 cut(s)	75, 525, 742, 894
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	2 cut(s)	349, 643
MalI	GATC	2 cut(s)	6, 586
MboI	GATC	2 cut(s)	4, 584
MboII	GAAGA	4 cut(s)	342, 401, 422, 695
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	1 cut(s)	584
MluCI	AATT	6 cut(s)	45, 149, 366, 670, 738, 781
MlyI	GAGTC	1 cut(s)	106
MseI	TTAA	3 cut(s)	147, 369, 632
MslI	CAYNNNNRTG	2 cut(s)	224, 899
MspI	CCGG	2 cut(s)	194, 565
MspR9I	CCNGG	2 cut(s)	194, 565
MunI	CAATTG	1 cut(s)	45
Mva1269I	GAATGC	1 cut(s)	728
NciI	CCSGG	2 cut(s)	194, 565
NcoI	CCATGG	1 cut(s)	494
NdeII	GATC	2 cut(s)	4, 584
NlaIII	CATG	3 cut(s)	112, 215, 498
NlaIV	GGNNCC	4 cut(s)	11, 128, 500, 569
NmuCI	GTSAC	2 cut(s)	349, 643
OliI	CACNNNNGTG	1 cut(s)	224
PciSI	GCTCTTC	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	2 cut(s)	453, 478
PctI	GAATGC	1 cut(s)	728
PflMI	CCANNNNNTGG	2 cut(s)	19, 659
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	1 cut(s)	106
PmaCI	CACGTG	1 cut(s)	224
PmlI	CACGTG	1 cut(s)	224
PpsI	GAGTC	1 cut(s)	106
Ppu21I	YACGTR	1 cut(s)	224
PspCI	CACGTG	1 cut(s)	224
PspN4I	GGNNCC	4 cut(s)	11, 128, 500, 569
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	584
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
RseI	CAYNNNNRTG	2 cut(s)	224, 899
SapI	GCTCTTC	1 cut(s)	325
SaqAI	TTAA	3 cut(s)	147, 369, 632
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	2 cut(s)	4, 584
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	2 cut(s)	194, 565
SfaNI	GCATC	4 cut(s)	75, 525, 742, 894
SfcI	CTRYAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	2 cut(s)	224, 899
Sse9I	AATT	6 cut(s)	45, 149, 366, 670, 738, 781
SsiI	CCGC	1 cut(s)	514
SspMI	CTAG	1 cut(s)	572
StyD4I	CCNGG	2 cut(s)	192, 563
StyI	CCWWGG	2 cut(s)	76, 494
TaaI	ACNGT	2 cut(s)	349, 701
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	6 cut(s)	284, 447, 456, 472, 481, 668
TasI	AATT	6 cut(s)	45, 149, 366, 670, 738, 781
Tru1I	TTAA	3 cut(s)	147, 369, 632
Tru9I	TTAA	3 cut(s)	147, 369, 632
TscAI	CASTG	1 cut(s)	128
TseFI	GTSAC	2 cut(s)	349, 643
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	2 cut(s)	349, 643
TspDTI	ATGAA	1 cut(s)	696
TspGWI	ACGGA	2 cut(s)	577, 702
TspRI	CASTG	1 cut(s)	128
Van91I	CCANNNNNTGG	2 cut(s)	19, 659
XapI	RAATTY	2 cut(s)	149, 781
XcmI	CCANNNNNNNNNTGG	1 cut(s)	226
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.