Rh1BG333000

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0019315
Physical Location & Seq
Reverse (-)
46866650 .. 46867388
739 bp
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UTR
Exon/CDS
Intron
Rh1BG333000.1

Sequence Viewer

Length: 258 bp
ATGAAGGATCAGTGGAGGTTCAATCGGTTTAGAGACCCTTTGGGGGTTGTGGGTGTGGTGGTTGTGTGGTTGCTGTTTCAGAATCTGAGCTTGTGTTGGGCTTTGAATGATGAAGGTTTGGCGCTTTTGAGGTTTAGAGAGAGAGTAGTGAGTGACCCATTTGGTGCTTTGTCGAACTGGAATGATGAAGATGGAGAGATTGACCCTTGCTCTTGGTTTGGGGTTGAATGCTCAGAGGGAAAAGTTGTGGTCTTGTAA

Protein Analysis

85

Amino Acids

9.76

Weight (kDa)

4.46

Isoelectric Point (pI)

23.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 35 - 78 3.4e-13 Leucine rich repeat N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0019315)

Species Orthologous Gene IDs
pyrus_communis pycom03g04990
rosa_chinensis RchiOBHm_Chr4g0424991 RchiOBHm_Chr7g0197371
rosa_roxburghii Rroxscaffold_1G00042530 Rroxscaffold_2G00117410 Rroxscaffold_5G00341270
rosa_samantha Rh1BG333000 Rh1DG364200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 15
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 3 cut(s) 22, 106, 227
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 27
AlwI GGATC 1 cut(s) 15
AlwNI CAGNNNCTG 1 cut(s) 85
AspLEI GCGC 1 cut(s) 124
BccI CCATC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 27
BfoI RGCGCY 1 cut(s) 125
BsaI GGTCTC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 182
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 2 cut(s) 77, 246
BseNI ACTGG 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 43
BsmAI GTCTC 1 cut(s) 27
BsmI GAATGC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 7
BspCNI CTCAG 2 cut(s) 78, 245
BspPI GGATC 1 cut(s) 15
BspTNI GGTCTC 1 cut(s) 27
BsrI ACTGG 1 cut(s) 182
BssMI GATC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 86, 232
BstH2I RGCGCY 1 cut(s) 125
BstHHI GCGC 1 cut(s) 124
BstKTI GATC 1 cut(s) 10
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 1 cut(s) 7
BtsIMutI CAGTG 1 cut(s) 17
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 1 cut(s) 124
CviJI RGCY 2 cut(s) 90, 101
CviKI_1 RGCY 2 cut(s) 90, 101
DdeI CTNAG 2 cut(s) 86, 232
DpnI GATC 1 cut(s) 9
DpnII GATC 1 cut(s) 7
Eco31I GGTCTC 1 cut(s) 27
GlaI GCGC 1 cut(s) 123
HaeII RGCGCY 1 cut(s) 125
HhaI GCGC 1 cut(s) 124
Hin6I GCGC 1 cut(s) 122
HinP1I GCGC 1 cut(s) 122
HinfI GANTC 1 cut(s) 82
Hpy188I TCNGA 3 cut(s) 81, 87, 235
HpyAV CCTTC 1 cut(s) 107
HpyF3I CTNAG 2 cut(s) 86, 232
HspAI GCGC 1 cut(s) 122
Kzo9I GATC 1 cut(s) 7
LpnPI CCDG 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 152
MalI GATC 1 cut(s) 9
MboI GATC 1 cut(s) 7
MboII GAAGA 1 cut(s) 200
MnlI CCTC 3 cut(s) 9, 123, 229
Mva1269I GAATGC 1 cut(s) 233
NdeII GATC 1 cut(s) 7
NmuCI GTSAC 1 cut(s) 152
PctI GAATGC 1 cut(s) 233
PfeI GAWTC 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 85
Sau3AI GATC 1 cut(s) 7
SetI ASST 4 cut(s) 20, 92, 118, 134
SgeI CNNG 4 cut(s) 103, 190, 219, 225
TaqI TCGA 1 cut(s) 173
TfiI GAWTC 1 cut(s) 82
TscAI CASTG 1 cut(s) 17
TseFI GTSAC 1 cut(s) 152
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 3 cut(s) 17, 126, 201
TspRI CASTG 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.