pycom03g07510

Outer envelope pore protein 16

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012343
Physical Location & Seq
Forward (+)
5972188 .. 5974715
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 492 bp
ATGGTTTCGTTGTTTAGAACGTCTTTAGAAGGGGAGAGAGAGGAGAAGAAAATGCCGAGAAGCAGTTTCGCGGGGTCGCTAACAGGGCCGAAGGTCGACGTGATGATCGACTTGGGCAACCCCTTCTTCAACCACACCGTCGATGGCTTCTTGAAGATCGGAACCGTCGCTGCTACCAGAGTTGTTGCAGAGGATGCTTTCTCGGCGGTCAAGAAAGGGAGAATTTCAAGTCACGATTTTGAGCACACTTTGAAGAAGATGTGTAAAGAAGGTGCATATTGGGGAACCATTGCTGGAGTGTACGTGGGAGCAGAGTATGGTATTGAGAGGGTCCGTGGACACAGAGACTGGAAGAATGCCATGCTCGGTGGTGCATTGACAGGGGCTCTAGTATCTGCTGCCAGCCACAAGAACACGGATAAAGTTCTGGTGGATGCAATTACGGGAGGTGCCATTGCAACCGCTGCGGAATTCATTAACTATCTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005744 GO:0005773 GO:0006605 GO:0006626 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006865 GO:0006886 GO:0006950 GO:0006996 GO:0007005 GO:0008104 GO:0008150 GO:0008509 GO:0008514 GO:0009266 GO:0009409 GO:0009507 GO:0009513 GO:0009526 GO:0009527 GO:0009536 GO:0009611 GO:0009628 GO:0009707 GO:0009719 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0015031 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015833 GO:0015849 GO:0016020 GO:0016021 GO:0016043 GO:0017038 GO:0019866 GO:0019867 GO:0019904 GO:0022857 GO:0030150 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031968 GO:0031969 GO:0031975 GO:0032592 GO:0032991 GO:0033036 GO:0033365 GO:0034220 GO:0034284 GO:0034285 GO:0034425 GO:0034426 GO:0034613 GO:0042170 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044743 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046942 GO:0046943 GO:0046983 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070585 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0071840 GO:0072594 GO:0072596 GO:0072598 GO:0072655 GO:0098573 GO:0098588 GO:0098656 GO:0098796 GO:0098798 GO:0098800 GO:0098805 GO:1901700 GO:1903825 GO:1905039 GO:1990542
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tim17

Protein Analysis

164

Amino Acids

17.53

Weight (kDa)

8.67

Isoelectric Point (pI)

12.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 54 - 153 1.3e-12 Tim17/Tim22/Tim23/Pmp24 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012343)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28900
fragaria_vesca FvH4_3g36080
malus_domestica MD03G1093500.v1.1 MD11G1108300.v1.1 MD11G1108500.v1.1 MD11G1108700.v1.1
prunus_persica Prupe.6G077600_v2.0.a1
pyrus_communis pycom03g07510 pycom11g08950 pycom11g08990
rosa_chinensis RchiOBHm_Chr5g0064511
rosa_laevigata RLG00000035730
rosa_multiflora Rmu_sc0003352.1_g000002
rosa_roxburghii Rroxscaffold_1G00016510
rosa_rugosa Rorug05G0365700 Rorug05G0365800
rosa_samantha Rh5AG423700 Rh5DG452400
rosa_wichuraiana Rw5G039830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccI GTMKAC 1 cut(s) 96
AccII CGCG 1 cut(s) 71
AciI CCGC 4 cut(s) 71, 206, 462, 467
AcsI RAATTY 2 cut(s) 222, 470
AfaI GTAC 1 cut(s) 302
AgsI TTSAA 4 cut(s) 130, 154, 228, 253
AjiI CACGTC 1 cut(s) 100
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 339
AlwNI CAGNNNCTG 1 cut(s) 348
AoxI GGCC 1 cut(s) 86
ApeKI GCWGC 3 cut(s) 170, 398, 464
ApoI RAATTY 2 cut(s) 222, 470
AspS9I GGNCC 2 cut(s) 86, 331
AsuHPI GGTGA 1 cut(s) 478
AvaII GGWCC 1 cut(s) 331
BanI GGYRCC 1 cut(s) 449
BanII GRGCYC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 246
BbvI GCAGC 3 cut(s) 157, 385, 451
BccI CCATC 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 389
BisI GCNGC 3 cut(s) 171, 399, 465
BlsI GCNGC 3 cut(s) 172, 400, 466
Bme18I GGWCC 1 cut(s) 331
BmgBI CACGTC 1 cut(s) 100
BmgT120I GGNCC 2 cut(s) 86, 331
BmiI GGNNCC 4 cut(s) 163, 286, 332, 451
BmsI GCATC 2 cut(s) 184, 424
BpmI CTGGAG 1 cut(s) 315
BsaAI YACGTR 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 334
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bse1I ACTGG 1 cut(s) 353
Bse3DI GCAATG 2 cut(s) 288, 453
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 2 cut(s) 199, 439
BseMI GCAATG 2 cut(s) 288, 453
BseNI ACTGG 1 cut(s) 353
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 3 cut(s) 157, 385, 451
Bsh1236I CGCG 1 cut(s) 71
BshFI GGCC 1 cut(s) 88
BshNI GGYRCC 1 cut(s) 449
BsiHKAI GWGCWC 1 cut(s) 246
BsmAI GTCTC 1 cut(s) 339
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 1 cut(s) 88
Bsp1286I GDGCHC 2 cut(s) 246, 388
Bsp143I GATC 2 cut(s) 105, 156
BspACI CCGC 4 cut(s) 71, 206, 462, 467
BspANI GGCC 1 cut(s) 88
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 4 cut(s) 163, 286, 332, 451
BspT107I GGYRCC 1 cut(s) 449
BsrDI GCAATG 2 cut(s) 288, 453
BsrI ACTGG 1 cut(s) 353
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 2 cut(s) 105, 156
Bst4CI ACNGT 2 cut(s) 139, 166
BstAPI GCANNNNNTGC 2 cut(s) 194, 464
BstBAI YACGTR 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 403
BstDSI CCRYGG 1 cut(s) 334
BstF5I GGATG 2 cut(s) 199, 439
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 2 cut(s) 108, 159
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 2 cut(s) 105, 156
BstMWI GCNNNNNNNGC 4 cut(s) 85, 194, 203, 464
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 3 cut(s) 157, 385, 451
BsuRI GGCC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 334
BtrI CACGTC 1 cut(s) 100
BtsCI GGATG 2 cut(s) 199, 439
Cac8I GCNNGC 1 cut(s) 403
CaiI CAGNNNCTG 1 cut(s) 348
Cfr13I GGNCC 2 cut(s) 86, 331
Csp6I GTAC 1 cut(s) 301
CviAII CATG 1 cut(s) 361
CviJI RGCY 4 cut(s) 88, 147, 386, 405
CviKI_1 RGCY 4 cut(s) 88, 147, 386, 405
CviQI GTAC 1 cut(s) 301
DpnI GATC 2 cut(s) 107, 158
DpnII GATC 2 cut(s) 105, 156
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 331
EcoRI GAATTC 1 cut(s) 470
EcoT38I GRGCYC 1 cut(s) 388
FaeI CATG 1 cut(s) 364
FaiI YATR 3 cut(s) 277, 318, 362
FatI CATG 1 cut(s) 360
FauI CCCGC 1 cut(s) 64
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 3 cut(s) 171, 399, 465
FokI GGATG 2 cut(s) 206, 446
FriOI GRGCYC 1 cut(s) 388
Fsp4HI GCNGC 3 cut(s) 171, 399, 465
FspBI CTAG 1 cut(s) 389
GluI GCNGC 3 cut(s) 171, 399, 465
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 88
Hin1II CATG 1 cut(s) 364
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HphI GGTGA 1 cut(s) 478
Hpy166II GTNNAC 3 cut(s) 97, 301, 338
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 3 cut(s) 151, 211, 233
Hpy8I GTNNAC 3 cut(s) 97, 301, 338
Hpy99I CGWCG 3 cut(s) 101, 143, 170
HpyAV CCTTC 4 cut(s) 23, 85, 133, 263
HpyCH4III ACNGT 2 cut(s) 139, 166
HpyCH4IV ACGT 3 cut(s) 20, 99, 303
HpyCH4V TGCA 5 cut(s) 188, 275, 374, 437, 458
HpyF10VI GCNNNNNNNGC 4 cut(s) 85, 194, 203, 464
HpySE526I ACGT 3 cut(s) 20, 99, 303
Hsp92II CATG 1 cut(s) 364
Kzo9I GATC 2 cut(s) 105, 156
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 7 cut(s) 69, 190, 279, 334, 366, 413, 415
Lsp1109I GCAGC 3 cut(s) 157, 385, 451
LweI GCATC 2 cut(s) 184, 424
MaeI CTAG 1 cut(s) 389
MaeII ACGT 3 cut(s) 20, 99, 303
MaeIII GTNAC 1 cut(s) 230
MalI GATC 2 cut(s) 107, 158
MboI GATC 2 cut(s) 105, 156
MboII GAAGA 6 cut(s) 58, 118, 166, 265, 268, 364
MhlI GDGCHC 2 cut(s) 246, 388
MluCI AATT 3 cut(s) 222, 438, 470
MnlI CCTC 4 cut(s) 34, 184, 321, 440
MseI TTAA 1 cut(s) 477
MspA1I CMGCKG 1 cut(s) 464
Mva1269I GAATGC 1 cut(s) 361
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 4 cut(s) 85, 194, 203, 464
NdeII GATC 2 cut(s) 105, 156
NlaIII CATG 1 cut(s) 364
NlaIV GGNNCC 4 cut(s) 163, 286, 332, 451
NmeAIII GCCGAG 2 cut(s) 81, 182
NmuCI GTSAC 1 cut(s) 230
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 361
PkrI GCNGC 3 cut(s) 172, 400, 466
Ppu21I YACGTR 1 cut(s) 304
PspN4I GGNNCC 4 cut(s) 163, 286, 332, 451
PspPI GGNCC 2 cut(s) 86, 331
PstNI CAGNNNCTG 1 cut(s) 348
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 477
SatI GCNGC 3 cut(s) 171, 399, 465
Sau3AI GATC 2 cut(s) 105, 156
Sau96I GGNCC 2 cut(s) 86, 331
SduI GDGCHC 2 cut(s) 246, 388
SetI ASST 7 cut(s) 23, 96, 102, 274, 306, 451, 491
SfaNI GCATC 2 cut(s) 184, 424
SinI GGWCC 1 cut(s) 331
Sse9I AATT 3 cut(s) 222, 438, 470
SsiI CCGC 4 cut(s) 71, 206, 462, 467
SspMI CTAG 1 cut(s) 389
TaaI ACNGT 2 cut(s) 139, 166
TaiI ACGT 3 cut(s) 23, 102, 306
TaqI TCGA 3 cut(s) 96, 108, 141
TasI AATT 3 cut(s) 222, 438, 470
Tru1I TTAA 1 cut(s) 477
Tru9I TTAA 1 cut(s) 477
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 3 cut(s) 170, 398, 464
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 1 cut(s) 463
TspGWI ACGGA 2 cut(s) 323, 431
VpaK11BI GGWCC 1 cut(s) 331
XapI RAATTY 2 cut(s) 222, 470
XcmI CCANNNNNNNNNTGG 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.