pycom03g12040

Phosphoesterase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0011842
Physical Location & Seq
Forward (+)
12391488 .. 12393788
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g12040.2

Sequence Viewer

Length: 924 bp
ATGGCCACCGCCGCCTCCACAACCACCATTTCAATCCTCCTTCTGCTGCTCATAGGACTCAACAGTCCAGTCCATGCTAATCCCATCAAAACCATAGTTGTTATAGTGATGGAGAACAGGTCATTCGACCACATGCTGGGGTGGATGAAGAAAATCAACCCTGAAATCAACGGCGTGGATGGCTCCGAGGCCAACCCTCTCTCCACCACCGACCCTAACTCCAAGCGCTTCTTCTTCAACAACGAGTCTCACTATGTGGACCCTGATCGATCTGGCCACTCCTTCCAAGCCATCCGAGAGCAGATATTCGGGTCGGATAACACGTCGGCCGACCCTCCACCCATGAATGGCTTTGCTCAGCAGGCATACTCCATGGACAACACCACCGCCCTGTCTCAGGATGTTATGAATGGATTCAACCCTGACATGGTTGCTGTCTACAAAACTCTTGTTTCTGAATTTGCTGTCTTTGACAGGTGGTTCGCCTCAGTGCCATCCTCAACACAGCCAAATCGGCTCTACGTACATTCAGGGACATCAGCTGGTGCAACAAGCAACATCCCAGCCCTTCTCGCCAAAGGGTACCCTCAAAGAACCATCTTCGAGAACCTCGACGACGCTGGAATATCCTTTGGAATATACTACCAAAACATCCCATCGACATTGTTCTATAGGAACCTGAGGAAGCTCAAGTACATAGGTAAGTTCCATTTGTACGACACCTTCAAAAGCCATGCAAAGGAAGGGAAACTGCCGGCGTACACCGTCATAGAACAGAGGTACTTCGATGTCAAGAGTGCACCAGCAAATGATGATCATCCCTCCCATGACGTGTACCACGGCCAGATGTTTGTGAAGGAGGTGTATGAGACACTGAGAGCAAGTCCTGGGTGGAACAACACCCTGATGATCGATCACGTATGA

Protein Analysis

308

Amino Acids

34.36

Weight (kDa)

6.11

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011842)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26870
fragaria_vesca FvH4_3g27850
malus_domestica MD03G1165700.v1.1 MD11G1185000.v1.1
prunus_persica Prupe.4G266000_v2.0.a1
pyrus_communis pycom03g12040 pycom12g08790
rosa_chinensis RchiOBHm_Chr5g0050581
rosa_laevigata RLG00000034707 RLG00000034708 RLG00000034709
rosa_multiflora Rmu_sc0001954.1_g000003
rosa_roxburghii Rroxscaffold_1G00030270
rosa_rugosa Rorug05G0262100
rosa_samantha Rh5AG333700 Rh5BG343500 Rh5CG371100 Rh5DG356300
rosa_wichuraiana Rw5G031500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 63
Acc65I GGTACC 1 cut(s) 582
AccB1I GGYRCC 1 cut(s) 582
AccB7I CCANNNNNTGG 1 cut(s) 136
AccI GTMKAC 1 cut(s) 438
AciI CCGC 3 cut(s) 9, 12, 387
AcoI YGGCCR 4 cut(s) 3, 274, 327, 841
AcsI RAATTY 1 cut(s) 458
AdeI CACNNNGTG 1 cut(s) 256
AfaI GTAC 7 cut(s) 525, 584, 695, 716, 761, 782, 836
AfeI AGCGCT 1 cut(s) 227
AfiI CCNNNNNNNGG 5 cut(s) 136, 347, 397, 427, 739
AflIII ACRYGT 2 cut(s) 321, 831
AgsI TTSAA 4 cut(s) 33, 238, 418, 727
AjiI CACGTC 2 cut(s) 324, 832
AjnI CCWGG 1 cut(s) 886
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AluBI AGCT 2 cut(s) 542, 688
AluI AGCT 2 cut(s) 542, 688
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 3 cut(s) 252, 399, 863
Alw44I GTGCAC 1 cut(s) 798
Aor51HI AGCGCT 1 cut(s) 227
AoxI GGCC 5 cut(s) 3, 189, 274, 327, 841
ApaLI GTGCAC 1 cut(s) 798
ApeKI GCWGC 1 cut(s) 46
ApoI RAATTY 1 cut(s) 458
ArsI GACNNNNNNTTYG 2 cut(s) 464, 496
Asp700I GAANNNNTTC 1 cut(s) 413
Asp718I GGTACC 1 cut(s) 582
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 1 cut(s) 259
AvaII GGWCC 1 cut(s) 259
AxyI CCTNAGG 1 cut(s) 680
BaeGI GKGCMC 1 cut(s) 802
BalI TGGCCA 2 cut(s) 5, 276
BanI GGYRCC 1 cut(s) 582
BarI GAAGNNNNNNTAC 4 cut(s) 677, 707, 709, 739
Bbv12I GWGCWC 1 cut(s) 802
BbvI GCAGC 1 cut(s) 33
BccI CCATC 7 cut(s) 92, 103, 173, 299, 502, 605, 664
BceAI ACGGC 2 cut(s) 187, 856
BciT130I CCWGG 1 cut(s) 888
BclI TGATCA 1 cut(s) 814
BcoDI GTCTC 3 cut(s) 252, 399, 863
BfmI CTRYAG 1 cut(s) 670
BfoI RGCGCY 1 cut(s) 229
BglI GCCNNNNNGGC 1 cut(s) 514
BisI GCNGC 2 cut(s) 12, 47
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 2 cut(s) 13, 48
Bme1390I CCNGG 1 cut(s) 888
Bme18I GGWCC 1 cut(s) 259
BmgBI CACGTC 2 cut(s) 324, 832
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 4 cut(s) 184, 261, 584, 677
BmrFI CCNGG 1 cut(s) 888
Bpu1102I GCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 674
Bsa29I ATCGAT 2 cut(s) 268, 912
BsaAI YACGTR 2 cut(s) 523, 919
BsaBI GATNNNNATC 1 cut(s) 816
BsaJI CCNNGG 4 cut(s) 186, 372, 838, 887
BsaXI ACNNNNNCTCC 6 cut(s) 104, 134, 185, 203, 215, 233
Bsc4I CCNNNNNNNGG 5 cut(s) 136, 347, 397, 427, 739
Bse118I RCCGGY 1 cut(s) 754
Bse1I ACTGG 1 cut(s) 68
Bse21I CCTNAGG 1 cut(s) 680
Bse8I GATNNNNATC 1 cut(s) 816
BseBI CCWGG 1 cut(s) 888
BseCI ATCGAT 2 cut(s) 268, 912
BseDI CCNNGG 4 cut(s) 186, 372, 838, 887
BseGI GGATG 8 cut(s) 150, 184, 291, 406, 494, 558, 651, 817
BseJI GATNNNNATC 1 cut(s) 816
BseLI CCNNNNNNNGG 5 cut(s) 136, 347, 397, 427, 739
BseMII CTCAG 5 cut(s) 371, 410, 501, 671, 866
BseNI ACTGG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 802
BseX3I CGGCCG 1 cut(s) 327
BseXI GCAGC 1 cut(s) 33
BseYI CCCAGC 2 cut(s) 136, 562
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 5 cut(s) 5, 191, 276, 329, 843
BshNI GGYRCC 1 cut(s) 582
BshVI ATCGAT 2 cut(s) 268, 912
BsiEI CGRYCG 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 802
BsiSI CCGG 1 cut(s) 755
BslFI GGGAC 1 cut(s) 547
BslI CCNNNNNNNGG 5 cut(s) 136, 347, 397, 427, 739
BsmAI GTCTC 3 cut(s) 252, 399, 863
BsmFI GGGAC 1 cut(s) 547
BsnI GGCC 5 cut(s) 5, 191, 276, 329, 843
Bsp1286I GDGCHC 1 cut(s) 802
Bsp143I GATC 5 cut(s) 265, 269, 814, 909, 913
Bsp1720I GCTNAGC 1 cut(s) 357
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 3 cut(s) 9, 12, 387
BspANI GGCC 5 cut(s) 5, 191, 276, 329, 843
BspCNI CTCAG 5 cut(s) 370, 409, 500, 672, 867
BspDI ATCGAT 2 cut(s) 268, 912
BspLI GGNNCC 4 cut(s) 184, 261, 584, 677
BspT107I GGYRCC 1 cut(s) 582
BsrFI RCCGGY 1 cut(s) 754
BsrI ACTGG 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 754
BssECI CCNNGG 4 cut(s) 186, 372, 838, 887
BssMI GATC 5 cut(s) 265, 269, 814, 909, 913
BssT1I CCWWGG 1 cut(s) 372
Bst2UI CCWGG 1 cut(s) 888
Bst4CI ACNGT 2 cut(s) 65, 766
BstBAI YACGTR 2 cut(s) 523, 919
BstC8I GCNNGC 2 cut(s) 363, 756
BstDEI CTNAG 5 cut(s) 357, 396, 487, 680, 875
BstDSI CCRYGG 2 cut(s) 372, 838
BstENI CCTNNNNNAGG 1 cut(s) 395
BstF5I GGATG 8 cut(s) 150, 184, 291, 406, 494, 558, 651, 817
BstH2I RGCGCY 1 cut(s) 229
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 5 cut(s) 268, 272, 817, 912, 916
BstMAI GTCTC 3 cut(s) 252, 399, 863
BstMBI GATC 5 cut(s) 265, 269, 814, 909, 913
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 5 cut(s) 11, 180, 362, 514, 572
BstNI CCWGG 1 cut(s) 888
BstNSI RCATGY 1 cut(s) 136
BstSCI CCNGG 1 cut(s) 886
BstSFI CTRYAG 1 cut(s) 670
BstSLI GKGCMC 1 cut(s) 802
BstSNI TACGTA 1 cut(s) 523
BstV1I GCAGC 1 cut(s) 33
BstZI CGGCCG 1 cut(s) 327
Bsu15I ATCGAT 2 cut(s) 268, 912
Bsu36I CCTNAGG 1 cut(s) 680
BsuRI GGCC 5 cut(s) 5, 191, 276, 329, 843
BsuTUI ATCGAT 2 cut(s) 268, 912
BtgI CCRYGG 2 cut(s) 372, 838
BtrI CACGTC 2 cut(s) 324, 832
BtsCI GGATG 8 cut(s) 150, 184, 291, 406, 494, 558, 651, 817
BtsIMutI CAGTG 2 cut(s) 495, 872
Cac8I GCNNGC 2 cut(s) 363, 756
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 754
Cfr13I GGNCC 1 cut(s) 259
ClaI ATCGAT 2 cut(s) 268, 912
CseI GACGC 1 cut(s) 626
Csp6I GTAC 7 cut(s) 524, 583, 694, 715, 760, 781, 835
CviAII CATG 7 cut(s) 74, 133, 343, 373, 427, 734, 827
CviQI GTAC 7 cut(s) 524, 583, 694, 715, 760, 781, 835
DdeI CTNAG 5 cut(s) 357, 396, 487, 680, 875
DpnI GATC 5 cut(s) 267, 271, 816, 911, 915
DpnII GATC 5 cut(s) 265, 269, 814, 909, 913
DraIII CACNNNGTG 1 cut(s) 256
DrdI GACNNNNNNGTC 1 cut(s) 63
DseDI GACNNNNNNGTC 1 cut(s) 63
EaeI YGGCCR 4 cut(s) 3, 274, 327, 841
EagI CGGCCG 1 cut(s) 327
EclXI CGGCCG 1 cut(s) 327
Eco105I TACGTA 1 cut(s) 523
Eco130I CCWWGG 1 cut(s) 372
Eco47I GGWCC 1 cut(s) 259
Eco47III AGCGCT 1 cut(s) 227
Eco52I CGGCCG 1 cut(s) 327
Eco81I CCTNAGG 1 cut(s) 680
EcoNI CCTNNNNNAGG 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 886
EcoT14I CCWWGG 1 cut(s) 372
ErhI CCWWGG 1 cut(s) 372
FaeI CATG 7 cut(s) 77, 136, 346, 376, 430, 737, 830
FalI AAGNNNNNCTT 2 cut(s) 215, 247
FaqI GGGAC 1 cut(s) 547
FatI CATG 7 cut(s) 73, 132, 342, 372, 426, 733, 826
FbaI TGATCA 1 cut(s) 814
FblI GTMKAC 1 cut(s) 438
Fnu4HI GCNGC 2 cut(s) 12, 47
FokI GGATG 8 cut(s) 157, 191, 278, 413, 481, 545, 638, 804
Fsp4HI GCNGC 2 cut(s) 12, 47
GlaI GCGC 1 cut(s) 227
GluI GCNGC 2 cut(s) 12, 47
GsaI CCCAGC 2 cut(s) 140, 566
HaeII RGCGCY 1 cut(s) 229
HaeIII GGCC 5 cut(s) 5, 191, 276, 329, 843
HapII CCGG 1 cut(s) 755
HgaI GACGC 1 cut(s) 626
HhaI GCGC 1 cut(s) 228
Hin1II CATG 7 cut(s) 77, 136, 346, 376, 430, 737, 830
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 3 cut(s) 57, 245, 414
HpaII CCGG 1 cut(s) 755
Hpy166II GTNNAC 5 cut(s) 259, 439, 762, 800, 835
Hpy188I TCNGA 4 cut(s) 187, 296, 316, 457
Hpy188III TCNNGA 3 cut(s) 398, 604, 793
Hpy8I GTNNAC 5 cut(s) 259, 439, 762, 800, 835
Hpy99I CGWCG 3 cut(s) 328, 617, 620
HpyAV CCTTC 6 cut(s) 50, 292, 578, 733, 737, 850
HpyCH4III ACNGT 2 cut(s) 65, 766
HpyCH4IV ACGT 4 cut(s) 323, 522, 831, 918
HpyCH4V TGCA 3 cut(s) 548, 737, 800
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 180, 362, 514, 572
HpyF3I CTNAG 5 cut(s) 357, 396, 487, 680, 875
HpySE526I ACGT 4 cut(s) 323, 522, 831, 918
Hsp92II CATG 7 cut(s) 77, 136, 346, 376, 430, 737, 830
HspAI GCGC 1 cut(s) 226
KpnI GGTACC 1 cut(s) 586
KroI GCCGGC 1 cut(s) 754
KroNI GCCGGC 1 cut(s) 756
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 5 cut(s) 265, 269, 814, 909, 913
LmnI GCTCC 1 cut(s) 188
Lsp1109I GCAGC 1 cut(s) 33
MaeII ACGT 4 cut(s) 323, 522, 831, 918
MalI GATC 5 cut(s) 267, 271, 816, 911, 915
MboI GATC 5 cut(s) 265, 269, 814, 909, 913
MboII GAAGA 4 cut(s) 160, 223, 226, 592
MhlI GDGCHC 1 cut(s) 802
MlsI TGGCCA 2 cut(s) 5, 276
MluCI AATT 1 cut(s) 458
MluNI TGGCCA 2 cut(s) 5, 276
MlyI GAGTC 2 cut(s) 51, 254
MmeI TCCRAC 1 cut(s) 294
Mox20I TGGCCA 2 cut(s) 5, 276
MroNI GCCGGC 1 cut(s) 754
MroXI GAANNNNTTC 1 cut(s) 413
MscI TGGCCA 2 cut(s) 5, 276
MslI CAYNNNNRTG 1 cut(s) 905
Msp20I TGGCCA 2 cut(s) 5, 276
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 1 cut(s) 755
MspR9I CCNGG 1 cut(s) 888
MvaI CCWGG 1 cut(s) 888
MwoI GCNNNNNNNGC 5 cut(s) 11, 180, 362, 514, 572
NaeI GCCGGC 1 cut(s) 756
NcoI CCATGG 1 cut(s) 372
NdeII GATC 5 cut(s) 265, 269, 814, 909, 913
NgoMIV GCCGGC 1 cut(s) 754
NlaIII CATG 7 cut(s) 77, 136, 346, 376, 430, 737, 830
NlaIV GGNNCC 4 cut(s) 184, 261, 584, 677
NspI RCATGY 1 cut(s) 136
PcsI WCGNNNNNNNCGW 2 cut(s) 320, 609
PdiI GCCGGC 1 cut(s) 756
PdmI GAANNNNTTC 1 cut(s) 413
PfeI GAWTC 1 cut(s) 414
PflMI CCANNNNNTGG 1 cut(s) 136
PkrI GCNGC 2 cut(s) 13, 48
PleI GAGTC 2 cut(s) 51, 253
PpsI GAGTC 2 cut(s) 51, 253
Ppu21I YACGTR 2 cut(s) 523, 919
Psp6I CCWGG 1 cut(s) 886
PspFI CCCAGC 2 cut(s) 136, 562
PspGI CCWGG 1 cut(s) 886
PspN4I GGNNCC 4 cut(s) 184, 261, 584, 677
PspPI GGNCC 1 cut(s) 259
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 7 cut(s) 525, 584, 695, 716, 761, 782, 836
RsaNI GTAC 7 cut(s) 524, 583, 694, 715, 760, 781, 835
RseI CAYNNNNRTG 1 cut(s) 905
SatI GCNGC 2 cut(s) 12, 47
Sau3AI GATC 5 cut(s) 265, 269, 814, 909, 913
Sau96I GGNCC 1 cut(s) 259
SchI GAGTC 2 cut(s) 51, 254
ScrFI CCNGG 1 cut(s) 888
SduI GDGCHC 1 cut(s) 802
SfcI CTRYAG 1 cut(s) 670
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 905
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SnaBI TACGTA 1 cut(s) 523
Sse9I AATT 1 cut(s) 458
SsiI CCGC 3 cut(s) 9, 12, 387
StyD4I CCNGG 1 cut(s) 886
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 65, 766
TaiI ACGT 4 cut(s) 326, 525, 834, 921
TaqI TCGA 7 cut(s) 126, 268, 603, 612, 659, 786, 912
TasI AATT 1 cut(s) 458
TatI WGTACW 1 cut(s) 693
TauI GCSGC 1 cut(s) 14
TfiI GAWTC 1 cut(s) 414
TscAI CASTG 2 cut(s) 495, 879
TseI GCWGC 1 cut(s) 46
TspDTI ATGAA 3 cut(s) 161, 359, 422
TspRI CASTG 2 cut(s) 495, 879
Van91I CCANNNNNTGG 1 cut(s) 136
VneI GTGCAC 1 cut(s) 798
VpaK11BI GGWCC 1 cut(s) 259
XagI CCTNNNNNAGG 1 cut(s) 395
XapI RAATTY 1 cut(s) 458
XceI RCATGY 1 cut(s) 136
XmiI GTMKAC 1 cut(s) 438
XmnI GAANNNNTTC 1 cut(s) 413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.