Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011842

Physical Location & Seq

Genomic Coordinates Forward (+)

52146206 .. 52150923

Gene Structure 4718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG343500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGTTAAAAAAACTTGGCTCTGCATGTAGGTGGTTTGCCTCGGTGCCATCCTCAACACAGCCGAATCGCCTCTTTGTTCATTCGGGGACTTCTGCTGGTGCAACAAGCAACATTGCGTCACTTCTGGCCAAGGGTTACCCACAAAGAACCATCTTCGAGAACCTTGACGATGAAGGAATATCCTTTGGAATATACTACCAAAACATTCCGACCACATTGTTCTACCGTAATTTGAGGAAGCTCAAGTACTTGGGCAACTTCCACCTATATGACGCCTTCAAGGCCCATGCAAAGCAAGGGAAGCTGCCATCCTACACTGTTGTGGAGCAGAGATACTTTGATCTCAAGTTCGCACCCGCAAACGATGACCATCCATCGCATGATGTGTACCACGGCCAAATGTTCGTCAAGGAGGTCTACGAGATACTGAGGGCGAGTCCGCAATGGAACCAGACCTTGTTGGTCATCACATATGATGAACATGGTGGGTTCTACGATCATGTGCCTACTCCCGTTGATGGGGTTCCCAGCCCGGATGGGATTGTAGGGCCGGAGCCTTTCTTGTTTCAGTTCAATCGGTTGGGAGTTAGGGTTCCGACCATCTTGGTGTCGCCCTGGATAGAAAAGGGTACCGTTGTTCATGGGCCTAATGGATCACCATTTCCGAATTCGGAATTTGAACATTCGTCAATTCCAGCAACTGTTAAGAAGGTGTTCAACCTGTCTGCACCATTCCTAACAAAGAGGGATGAATGGGCTGGTACCTTTGAAGCCATTGTGCAAACAAGGACAGAACCCAGAACTGATTGTCCAGAGCAACTACCTGAACCAGTCCCAACCAGAAACAGCACGGCAAAGGAAGACGCCAAGCTTAGTGAATTTCAGCAGGAGGTACTGCAACTTGCAGCCGTGCTAAAAGGAGATAACCTATTTACAAGTTACCCAGAAAAGACGGGGAAGAAGATGACTGTCAAGGAAGGGAAGGAATACACTGAAGATGCACTTAAACGATTCTTCGAGGCAGGGCTTTATGCTAAGAGAATGGGAGTCAATGAAGAACAAATTGTCCAGATGAGGCCCTCCCTTACAACAAGATCATCCAAAACTTCACCAGAACACCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019637 GO:0042578 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046434 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00562 ko00564 ko00565 ko01100 ko01110 ko02024 ko04919 map00562 map00564 map00565 map01100 map01110 map02024 map04919

Pfam Domains

Protein Families

Phosphoesterase

Protein Analysis

374

Amino Acids

42.14

Weight (kDa)

7.19

Isoelectric Point (pI)

49.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphoesterase	PF04185	10 - 241	4.4e-74	Phosphoesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26870
fragaria_vesca	FvH4_3g27850
malus_domestica	MD03G1165700.v1.1 MD11G1185000.v1.1
prunus_persica	Prupe.4G266000_v2.0.a1
pyrus_communis	pycom03g12040 pycom12g08790
rosa_chinensis	RchiOBHm_Chr5g0050581
rosa_laevigata	RLG00000034707 RLG00000034708 RLG00000034709
rosa_multiflora	Rmu_sc0001954.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030270
rosa_rugosa	Rorug05G0262100
rosa_samantha	Rh5AG333700 Rh5BG343500 Rh5CG371100 Rh5DG356300
rosa_wichuraiana	Rw5G031500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	629, 761
AccB1I	GGYRCC	3 cut(s)	43, 629, 761
AccI	GTMKAC	1 cut(s)	417
AciI	CCGC	2 cut(s)	357, 440
AclWI	GGATC	1 cut(s)	661
AcoI	YGGCCR	2 cut(s)	126, 394
AcsI	RAATTY	3 cut(s)	667, 674, 878
AcuI	CTGAAG	1 cut(s)	1014
AcyI	GRCGYC	2 cut(s)	273, 864
AfaI	GTAC	5 cut(s)	248, 389, 631, 763, 894
AfiI	CCNNNNNNNGG	2 cut(s)	518, 519
AgsI	TTSAA	5 cut(s)	280, 574, 680, 718, 770
AjnI	CCWGG	1 cut(s)	614
AleI	CACNNNNGTG	1 cut(s)	320
AloI	GAACNNNNNNTCC	6 cut(s)	576, 608, 793, 825, 1050, 1082
AluBI	AGCT	3 cut(s)	241, 304, 871
AluI	AGCT	3 cut(s)	241, 304, 871
AlwI	GGATC	1 cut(s)	661
AlwNI	CAGNNNCTG	1 cut(s)	701
AoxI	GGCC	6 cut(s)	126, 282, 394, 548, 644, 1076
ApeKI	GCWGC	2 cut(s)	304, 905
ApoI	RAATTY	3 cut(s)	667, 674, 878
Asp700I	GAANNNNTTC	1 cut(s)	713
Asp718I	GGTACC	2 cut(s)	629, 761
AspS9I	GGNCC	4 cut(s)	283, 548, 644, 1077
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	2 cut(s)	648, 1101
BaeI	ACNNNNGTAYC	2 cut(s)	621, 654
BalI	TGGCCA	1 cut(s)	128
BanI	GGYRCC	3 cut(s)	43, 629, 761
BarI	GAAGNNNNNNTAC	2 cut(s)	230, 262
BbsI	GAAGAC	1 cut(s)	867
BbvI	GCAGC	2 cut(s)	291, 917
BccI	CCATC	8 cut(s)	55, 158, 316, 378, 382, 512, 530, 608
BceAI	ACGGC	3 cut(s)	409, 867, 893
BciT130I	CCWGG	1 cut(s)	616
BcnI	CCSGG	1 cut(s)	533
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	2 cut(s)	305, 906
BlsI	GCNGC	2 cut(s)	306, 907
BmcAI	AGTACT	1 cut(s)	248
Bme1390I	CCNGG	2 cut(s)	533, 616
BmgT120I	GGNCC	4 cut(s)	283, 548, 644, 1077
BmiI	GGNNCC	7 cut(s)	45, 449, 525, 555, 594, 631, 763
BmrFI	CCNGG	2 cut(s)	533, 616
BmsI	GCATC	1 cut(s)	988
BpiI	GAAGAC	1 cut(s)	867
BpuEI	CTTGAG	2 cut(s)	227, 329
BpuMI	CCSGG	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	369
BsaHI	GRCGYC	2 cut(s)	273, 864
BsaJI	CCNNGG	4 cut(s)	39, 129, 391, 614
BsaXI	ACNNNNNCTCC	2 cut(s)	576, 606
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 519
Bse1I	ACTGG	1 cut(s)	830
Bse3DI	GCAATG	2 cut(s)	111, 449
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	616
BseDI	CCNNGG	4 cut(s)	39, 129, 391, 614
BseGI	GGATG	6 cut(s)	47, 308, 370, 541, 754, 1097
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	518, 519
BseMI	GCAATG	2 cut(s)	111, 449
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	1 cut(s)	830
BseXI	GCAGC	2 cut(s)	291, 917
BseYI	CCCAGC	1 cut(s)	527
BsgI	GTGCAG	1 cut(s)	711
BshFI	GGCC	6 cut(s)	128, 284, 396, 550, 646, 1078
BshNI	GGYRCC	3 cut(s)	43, 629, 761
BsiSI	CCGG	2 cut(s)	533, 551
BslFI	GGGAC	2 cut(s)	100, 818
BslI	CCNNNNNNNGG	2 cut(s)	518, 519
BsmFI	GGGAC	2 cut(s)	100, 818
BsnI	GGCC	6 cut(s)	128, 284, 396, 550, 646, 1078
Bsp143I	GATC	4 cut(s)	340, 496, 653, 1094
BspACI	CCGC	2 cut(s)	357, 440
BspANI	GGCC	6 cut(s)	128, 284, 396, 550, 646, 1078
BspCNI	CTCAG	1 cut(s)	420
BspLI	GGNNCC	7 cut(s)	45, 449, 525, 555, 594, 631, 763
BspPI	GGATC	1 cut(s)	661
BspT107I	GGYRCC	3 cut(s)	43, 629, 761
BsrDI	GCAATG	2 cut(s)	111, 449
BsrI	ACTGG	1 cut(s)	830
BssECI	CCNNGG	4 cut(s)	39, 129, 391, 614
BssMI	GATC	4 cut(s)	340, 496, 653, 1094
BssNI	GRCGYC	2 cut(s)	273, 864
BssT1I	CCWWGG	1 cut(s)	129
Bst2UI	CCWGG	1 cut(s)	616
Bst4CI	ACNGT	5 cut(s)	227, 319, 634, 703, 970
BstACI	GRCGYC	2 cut(s)	273, 864
BstDEI	CTNAG	3 cut(s)	428, 872, 1035
BstDSI	CCRYGG	1 cut(s)	391
BstEII	GGTNACC	1 cut(s)	134
BstF5I	GGATG	6 cut(s)	47, 308, 370, 541, 754, 1097
BstKTI	GATC	4 cut(s)	343, 499, 656, 1097
BstMBI	GATC	4 cut(s)	340, 496, 653, 1094
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 301
BstNI	CCWGG	1 cut(s)	616
BstNSI	RCATGY	1 cut(s)	27
BstPI	GGTNACC	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	531, 614
BstV1I	GCAGC	2 cut(s)	291, 917
BstV2I	GAAGAC	1 cut(s)	867
BsuRI	GGCC	6 cut(s)	128, 284, 396, 550, 646, 1078
BtgI	CCRYGG	1 cut(s)	391
BtgZI	GCGATG	1 cut(s)	360
BtsCI	GGATG	6 cut(s)	47, 308, 370, 541, 754, 1097
BtsIMutI	CAGTG	2 cut(s)	315, 990
CaiI	CAGNNNCTG	1 cut(s)	701
Cfr13I	GGNCC	4 cut(s)	283, 548, 644, 1077
CseI	GACGC	3 cut(s)	105, 281, 872
Csp6I	GTAC	5 cut(s)	247, 388, 630, 762, 893
CviAII	CATG	6 cut(s)	24, 287, 380, 482, 500, 641
CviQI	GTAC	5 cut(s)	247, 388, 630, 762, 893
DdeI	CTNAG	3 cut(s)	428, 872, 1035
DpnI	GATC	4 cut(s)	342, 498, 655, 1096
DpnII	GATC	4 cut(s)	340, 496, 653, 1094
EaeI	YGGCCR	2 cut(s)	126, 394
Eco130I	CCWWGG	1 cut(s)	129
Eco57I	CTGAAG	1 cut(s)	1014
Eco91I	GGTNACC	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	1077
EcoO65I	GGTNACC	1 cut(s)	134
EcoRI	GAATTC	1 cut(s)	667
EcoRII	CCWGG	1 cut(s)	614
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	6 cut(s)	27, 290, 383, 485, 503, 644
FalI	AAGNNNNNCTT	2 cut(s)	987, 1019
FaqI	GGGAC	2 cut(s)	100, 818
FatI	CATG	6 cut(s)	23, 286, 379, 481, 499, 640
FauI	CCCGC	1 cut(s)	364
FauNDI	CATATG	1 cut(s)	472
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	2 cut(s)	305, 906
FokI	GGATG	6 cut(s)	34, 295, 357, 548, 761, 1084
Fsp4HI	GCNGC	2 cut(s)	305, 906
GluI	GCNGC	2 cut(s)	305, 906
GsaI	CCCAGC	1 cut(s)	531
HaeIII	GGCC	6 cut(s)	128, 284, 396, 550, 646, 1078
HapII	CCGG	2 cut(s)	533, 551
HgaI	GACGC	3 cut(s)	105, 281, 872
Hin1I	GRCGYC	2 cut(s)	273, 864
Hin1II	CATG	6 cut(s)	27, 290, 383, 485, 503, 644
HindIII	AAGCTT	1 cut(s)	869
HinfI	GANTC	4 cut(s)	64, 436, 1011, 1047
HpaII	CCGG	2 cut(s)	533, 551
HphI	GGTGA	2 cut(s)	648, 1101
Hpy166II	GTNNAC	2 cut(s)	388, 418
Hpy188I	TCNGA	4 cut(s)	210, 597, 666, 673
Hpy188III	TCNNGA	3 cut(s)	157, 812, 1069
Hpy8I	GTNNAC	2 cut(s)	388, 418
HpyAV	CCTTC	5 cut(s)	167, 286, 703, 971, 976
HpyCH4III	ACNGT	5 cut(s)	227, 319, 634, 703, 970
HpyCH4V	TGCA	8 cut(s)	23, 101, 290, 728, 781, 898, 905, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 301
HpyF3I	CTNAG	3 cut(s)	428, 872, 1035
Hsp92I	GRCGYC	2 cut(s)	273, 864
Hsp92II	CATG	6 cut(s)	27, 290, 383, 485, 503, 644
KpnI	GGTACC	2 cut(s)	633, 765
Kzo9I	GATC	4 cut(s)	340, 496, 653, 1094
LmnI	GCTCC	2 cut(s)	325, 553
Lsp1109I	GCAGC	2 cut(s)	291, 917
LweI	GCATC	1 cut(s)	988
MaeIII	GTNAC	3 cut(s)	117, 134, 938
MalI	GATC	4 cut(s)	342, 498, 655, 1096
MboI	GATC	4 cut(s)	340, 496, 653, 1094
MboII	GAAGA	7 cut(s)	145, 872, 970, 973, 1006, 1007, 1067
MlsI	TGGCCA	1 cut(s)	128
MluCI	AATT	6 cut(s)	229, 667, 674, 690, 878, 1062
MluNI	TGGCCA	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	445, 1056
MmeI	TCCRAC	2 cut(s)	233, 620
Mox20I	TGGCCA	1 cut(s)	128
MroXI	GAANNNNTTC	1 cut(s)	713
MscI	TGGCCA	1 cut(s)	128
MseI	TTAA	3 cut(s)	5, 705, 1005
MslI	CAYNNNNRTG	4 cut(s)	28, 267, 320, 605
Msp20I	TGGCCA	1 cut(s)	128
MspI	CCGG	2 cut(s)	533, 551
MspR9I	CCNGG	2 cut(s)	533, 616
MvaI	CCWGG	1 cut(s)	616
MwoI	GCNNNNNNNGC	2 cut(s)	281, 301
NciI	CCSGG	1 cut(s)	533
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	4 cut(s)	340, 496, 653, 1094
NlaIII	CATG	6 cut(s)	27, 290, 383, 485, 503, 644
NlaIV	GGNNCC	7 cut(s)	45, 449, 525, 555, 594, 631, 763
NmuCI	GTSAC	1 cut(s)	117
NspI	RCATGY	1 cut(s)	27
OliI	CACNNNNGTG	1 cut(s)	320
PdmI	GAANNNNTTC	1 cut(s)	713
PfeI	GAWTC	2 cut(s)	64, 1011
PkrI	GCNGC	2 cut(s)	306, 907
PleI	GAGTC	2 cut(s)	444, 1055
PpsI	GAGTC	2 cut(s)	444, 1055
Psp6I	CCWGG	1 cut(s)	614
PspEI	GGTNACC	1 cut(s)	134
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	614
PspN4I	GGNNCC	7 cut(s)	45, 449, 525, 555, 594, 631, 763
PspPI	GGNCC	4 cut(s)	283, 548, 644, 1077
PstNI	CAGNNNCTG	1 cut(s)	701
RsaI	GTAC	5 cut(s)	248, 389, 631, 763, 894
RsaNI	GTAC	5 cut(s)	247, 388, 630, 762, 893
RseI	CAYNNNNRTG	4 cut(s)	28, 267, 320, 605
SaqAI	TTAA	3 cut(s)	5, 705, 1005
SatI	GCNGC	2 cut(s)	305, 906
Sau3AI	GATC	4 cut(s)	340, 496, 653, 1094
Sau96I	GGNCC	4 cut(s)	283, 548, 644, 1077
ScaI	AGTACT	1 cut(s)	248
SchI	GAGTC	2 cut(s)	445, 1056
ScrFI	CCNGG	2 cut(s)	533, 616
SfaNI	GCATC	1 cut(s)	988
SmiMI	CAYNNNNRTG	4 cut(s)	28, 267, 320, 605
SmlI	CTYRAG	2 cut(s)	242, 344
SmoI	CTYRAG	2 cut(s)	242, 344
Sse9I	AATT	6 cut(s)	229, 667, 674, 690, 878, 1062
SsiI	CCGC	2 cut(s)	357, 440
StyD4I	CCNGG	2 cut(s)	531, 614
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	5 cut(s)	227, 319, 634, 703, 970
TaqI	TCGA	2 cut(s)	156, 1017
TasI	AATT	6 cut(s)	229, 667, 674, 690, 878, 1062
TatI	WGTACW	1 cut(s)	246
TfiI	GAWTC	2 cut(s)	64, 1011
Tru1I	TTAA	3 cut(s)	5, 705, 1005
Tru9I	TTAA	3 cut(s)	5, 705, 1005
TscAI	CASTG	2 cut(s)	322, 997
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	2 cut(s)	304, 905
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	6 cut(s)	68, 186, 492, 629, 765, 1068
TspRI	CASTG	2 cut(s)	322, 997
XapI	RAATTY	3 cut(s)	667, 674, 878
XceI	RCATGY	1 cut(s)	27
XmiI	GTMKAC	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	713
ZrmI	AGTACT	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.