Rorug05G0262100

hydroxyproline O-arabinosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002578
Physical Location & Seq
Reverse (-)
29630169 .. 29634377
4209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0262100.1

Sequence Viewer

Length: 786 bp
ATGCGTGTCATTGATTGTGGCAGTGAGAAGATAGACAAGAGTTTTGTTGGCCATGGTGACTCGATAAACGAAATCAGGACTCAGCCATTGAAGTCATCACTTGTAGTGTCAGCAAGCAAAGATGAGTCAGTTCGACTATGGAATGTTCATACTGGAATATGTATTTTGATATTCGCTGGAGCAGGGGGTCATCGAAATGAAGTCTTGAGTGTGGACTTCCATCCATCTGACATTTATCGCATTGCAAGTTGTGGCATGGACAACACAATTAAGATATGGTCGATGAAAGAGTTCTGGACATATGTAGAGAAATCTTTCACATGGACAGATCTTCCATCAAAATTCCCTACAAAATACGTACAATTTCCTGTATTCCTAGCCTCCATTCACACAAACTATGTTGACTGTAATAGGTGGCTTGGAGATTTTATGCTCTCAAAGAGTGTTGACAGTGAAATTGTGCTATGGGAACCGAAAATGAAGGAGCAGTCTCCCGGGGAGGGCACTGTTGACATCCTTCAAAAGTACCCTGTTCCAGGGTGTGATATTTGGTTTATCAAGTTTTCCTGTGATTTCCATTATAATGCAGCTGCTATAGGGAATAGAGAAGGAAAGATATTCATTTGGGAACTACAATCGAGCCCCCCAGTCCTTATCGCAAAGTTGTCTCATCCTCAATCAAAATCTCCAATTAGACAAACTGCCATGTCCTTTGATGGAAGCACCATTCTCAGCTGCTGTGAGGACGGCACTATTTGGCGCTGGGATGTCATGGAAAATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.6

Weight (kDa)

5.81

Isoelectric Point (pI)

48.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 2 - 98 3.8e-06 CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 2 - 102 4.1e-07 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR5 PF25175 3 - 97 3.6e-15 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 3 - 94 1.5e-12 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 3 - 98 7.8e-12 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 9 - 55 2.3e-07 THOC3 beta-propeller domain
Beta-prop_WDR3_2nd PF25172 32 - 98 2.2e-06 WDR3 second beta-propeller domain
WD40 PF00400 63 - 94 1.2e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 2 cut(s) 341, 778
AfaI GTAC 2 cut(s) 360, 527
AfiI CCNNNNNNNGG 2 cut(s) 500, 536
AgsI TTSAA 2 cut(s) 91, 521
AjnI CCWGG 1 cut(s) 535
AluBI AGCT 2 cut(s) 590, 735
AluI AGCT 2 cut(s) 590, 735
Alw26I GTCTC 2 cut(s) 495, 672
AlwNI CAGNNNCTG 1 cut(s) 738
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 3 cut(s) 587, 590, 735
ApoI RAATTY 2 cut(s) 341, 778
ArsI GACNNNNNNTTYG 2 cut(s) 26, 58
Asp700I GAANNNNTTC 2 cut(s) 290, 314
AspLEI GCGC 1 cut(s) 762
AsuC2I CCSGG 2 cut(s) 495, 496
AsuHPI GGTGA 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 494
BaeGI GKGCMC 1 cut(s) 506
BalI TGGCCA 1 cut(s) 51
BanII GRGCYC 1 cut(s) 644
BbvI GCAGC 3 cut(s) 577, 599, 722
BccI CCATC 4 cut(s) 228, 232, 343, 710
BceAI ACGGC 1 cut(s) 763
BciT130I CCWGG 1 cut(s) 537
BcnI CCSGG 2 cut(s) 495, 496
BcoDI GTCTC 2 cut(s) 495, 672
BfaI CTAG 1 cut(s) 377
BfmI CTRYAG 1 cut(s) 594
BfoI RGCGCY 1 cut(s) 763
BglII AGATCT 1 cut(s) 328
BisI GCNGC 3 cut(s) 588, 591, 736
BlsI GCNGC 3 cut(s) 589, 592, 737
Bme1390I CCNGG 3 cut(s) 495, 496, 537
BmeT110I CYCGRG 1 cut(s) 494
BmiI GGNNCC 1 cut(s) 471
BmrFI CCNGG 3 cut(s) 495, 496, 537
BmrI ACTGGG 1 cut(s) 641
BmuI ACTGGG 1 cut(s) 641
BpmI CTGGAG 1 cut(s) 198
BpuEI CTTGAG 1 cut(s) 226
BpuMI CCSGG 2 cut(s) 495, 496
BsaAI YACGTR 1 cut(s) 358
BsaJI CCNNGG 4 cut(s) 52, 494, 495, 536
Bsc4I CCNNNNNNNGG 2 cut(s) 500, 536
Bse1I ACTGG 2 cut(s) 157, 647
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 537
BseDI CCNNGG 4 cut(s) 52, 494, 495, 536
BseGI GGATG 4 cut(s) 220, 513, 670, 772
BseLI CCNNNNNNNGG 2 cut(s) 500, 536
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 2 cut(s) 95, 745
BseNI ACTGG 2 cut(s) 157, 647
BseSI GKGCMC 1 cut(s) 506
BseXI GCAGC 3 cut(s) 577, 599, 722
BseYI CCCAGC 1 cut(s) 762
BshFI GGCC 1 cut(s) 51
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 1 cut(s) 495
BslI CCNNNNNNNGG 2 cut(s) 500, 536
BsmAI GTCTC 2 cut(s) 495, 672
BsnI GGCC 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 494
Bsp1286I GDGCHC 2 cut(s) 506, 644
Bsp143I GATC 1 cut(s) 328
Bsp19I CCATGG 1 cut(s) 52
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 2 cut(s) 94, 744
BspLI GGNNCC 1 cut(s) 471
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 2 cut(s) 157, 647
BssECI CCNNGG 4 cut(s) 52, 494, 495, 536
BssMI GATC 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 537
Bst4CI ACNGT 3 cut(s) 407, 452, 508
BstBAI YACGTR 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 115
BstDEI CTNAG 2 cut(s) 81, 731
BstDSI CCRYGG 1 cut(s) 52
BstENI CCTNNNNNAGG 1 cut(s) 534
BstF5I GGATG 4 cut(s) 220, 513, 670, 772
BstH2I RGCGCY 1 cut(s) 763
BstHHI GCGC 1 cut(s) 762
BstKTI GATC 1 cut(s) 331
BstMAI GTCTC 2 cut(s) 495, 672
BstMBI GATC 1 cut(s) 328
BstNI CCWGG 1 cut(s) 537
BstSCI CCNGG 3 cut(s) 493, 494, 535
BstSFI CTRYAG 1 cut(s) 594
BstSLI GKGCMC 1 cut(s) 506
BstSNI TACGTA 1 cut(s) 358
BstV1I GCAGC 3 cut(s) 577, 599, 722
BstX2I RGATCY 1 cut(s) 328
BstYI RGATCY 1 cut(s) 328
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 52
BtsCI GGATG 4 cut(s) 220, 513, 670, 772
BtsI GCAGTG 1 cut(s) 28
BtsIMutI CAGTG 3 cut(s) 28, 457, 504
Cac8I GCNNGC 1 cut(s) 115
CaiI CAGNNNCTG 1 cut(s) 738
CfoI GCGC 1 cut(s) 762
Cfr9I CCCGGG 1 cut(s) 494
Csp6I GTAC 2 cut(s) 359, 526
CviAII CATG 5 cut(s) 53, 256, 321, 706, 772
CviJI RGCY 7 cut(s) 51, 85, 380, 418, 590, 642, 735
CviKI_1 RGCY 7 cut(s) 51, 85, 380, 418, 590, 642, 735
CviQI GTAC 2 cut(s) 359, 526
DdeI CTNAG 2 cut(s) 81, 731
DpnI GATC 1 cut(s) 330
DpnII GATC 1 cut(s) 328
EaeI YGGCCR 1 cut(s) 49
Eco105I TACGTA 1 cut(s) 358
Eco130I CCWWGG 1 cut(s) 52
Eco24I GRGCYC 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 494
EcoNI CCTNNNNNAGG 1 cut(s) 534
EcoRII CCWGG 1 cut(s) 535
EcoT14I CCWWGG 1 cut(s) 52
EcoT38I GRGCYC 1 cut(s) 644
ErhI CCWWGG 1 cut(s) 52
FaeI CATG 5 cut(s) 56, 259, 324, 709, 775
FatI CATG 5 cut(s) 52, 255, 320, 705, 771
FauNDI CATATG 1 cut(s) 301
Fnu4HI GCNGC 3 cut(s) 588, 591, 736
FokI GGATG 4 cut(s) 207, 500, 657, 779
FriOI GRGCYC 1 cut(s) 644
Fsp4HI GCNGC 3 cut(s) 588, 591, 736
FspBI CTAG 1 cut(s) 377
GlaI GCGC 1 cut(s) 761
GluI GCNGC 3 cut(s) 588, 591, 736
GsaI CCCAGC 1 cut(s) 766
GsuI CTGGAG 1 cut(s) 198
HaeII RGCGCY 1 cut(s) 763
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 495
HhaI GCGC 1 cut(s) 762
Hin1II CATG 5 cut(s) 56, 259, 324, 709, 775
Hin6I GCGC 1 cut(s) 760
HinP1I GCGC 1 cut(s) 760
HincII GTYRAC 3 cut(s) 403, 448, 511
HindII GTYRAC 3 cut(s) 403, 448, 511
HinfI GANTC 3 cut(s) 59, 79, 125
HpaII CCGG 1 cut(s) 495
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 4 cut(s) 214, 403, 448, 511
Hpy188I TCNGA 1 cut(s) 229
Hpy188III TCNNGA 3 cut(s) 76, 205, 295
Hpy8I GTNNAC 4 cut(s) 214, 403, 448, 511
HpyAV CCTTC 3 cut(s) 475, 527, 602
HpyCH4III ACNGT 3 cut(s) 407, 452, 508
HpyCH4IV ACGT 1 cut(s) 357
HpyCH4V TGCA 2 cut(s) 245, 587
HpyF3I CTNAG 2 cut(s) 81, 731
HpySE526I ACGT 1 cut(s) 357
Hsp92II CATG 5 cut(s) 56, 259, 324, 709, 775
HspAI GCGC 1 cut(s) 760
Kzo9I GATC 1 cut(s) 328
LmnI GCTCC 2 cut(s) 179, 484
Lsp1109I GCAGC 3 cut(s) 577, 599, 722
MaeI CTAG 1 cut(s) 377
MaeII ACGT 1 cut(s) 357
MaeIII GTNAC 1 cut(s) 56
MalI GATC 1 cut(s) 330
MboI GATC 1 cut(s) 328
MboII GAAGA 2 cut(s) 40, 323
MflI RGATCY 1 cut(s) 328
MhlI GDGCHC 2 cut(s) 506, 644
MlsI TGGCCA 1 cut(s) 51
MluCI AATT 6 cut(s) 267, 341, 362, 456, 690, 778
MluNI TGGCCA 1 cut(s) 51
MlyI GAGTC 3 cut(s) 53, 73, 134
MnlI CCTC 4 cut(s) 391, 493, 684, 736
Mox20I TGGCCA 1 cut(s) 51
MroXI GAANNNNTTC 2 cut(s) 290, 314
MscI TGGCCA 1 cut(s) 51
MseI TTAA 2 cut(s) 270, 784
MslI CAYNNNNRTG 2 cut(s) 195, 582
Msp20I TGGCCA 1 cut(s) 51
MspA1I CMGCKG 2 cut(s) 590, 735
MspI CCGG 1 cut(s) 495
MspR9I CCNGG 3 cut(s) 495, 496, 537
MvaI CCWGG 1 cut(s) 537
NciI CCSGG 2 cut(s) 495, 496
NcoI CCATGG 1 cut(s) 52
NdeI CATATG 1 cut(s) 301
NdeII GATC 1 cut(s) 328
NlaIII CATG 5 cut(s) 56, 259, 324, 709, 775
NlaIV GGNNCC 1 cut(s) 471
NmuCI GTSAC 1 cut(s) 56
PdmI GAANNNNTTC 2 cut(s) 290, 314
PkrI GCNGC 3 cut(s) 589, 592, 737
PleI GAGTC 3 cut(s) 53, 73, 133
PpsI GAGTC 3 cut(s) 53, 73, 133
Ppu21I YACGTR 1 cut(s) 358
PsiI TTATAA 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 535
PspFI CCCAGC 1 cut(s) 762
PspGI CCWGG 1 cut(s) 535
PspN4I GGNNCC 1 cut(s) 471
PstNI CAGNNNCTG 1 cut(s) 738
PsuI RGATCY 1 cut(s) 328
PvuII CAGCTG 2 cut(s) 590, 735
RsaI GTAC 2 cut(s) 360, 527
RsaNI GTAC 2 cut(s) 359, 526
RseI CAYNNNNRTG 2 cut(s) 195, 582
SaqAI TTAA 2 cut(s) 270, 784
SatI GCNGC 3 cut(s) 588, 591, 736
Sau3AI GATC 1 cut(s) 328
SchI GAGTC 3 cut(s) 53, 73, 134
ScrFI CCNGG 3 cut(s) 495, 496, 537
SduI GDGCHC 2 cut(s) 506, 644
SetI ASST 4 cut(s) 360, 416, 592, 737
SfcI CTRYAG 1 cut(s) 594
SmaI CCCGGG 1 cut(s) 496
SmiMI CAYNNNNRTG 2 cut(s) 195, 582
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
SnaBI TACGTA 1 cut(s) 358
Sse9I AATT 6 cut(s) 267, 341, 362, 456, 690, 778
SspMI CTAG 1 cut(s) 377
StyD4I CCNGG 3 cut(s) 493, 494, 535
StyI CCWWGG 1 cut(s) 52
TaaI ACNGT 3 cut(s) 407, 452, 508
TaiI ACGT 1 cut(s) 360
TaqI TCGA 5 cut(s) 62, 133, 193, 281, 638
TasI AATT 6 cut(s) 267, 341, 362, 456, 690, 778
Tru1I TTAA 2 cut(s) 270, 784
Tru9I TTAA 2 cut(s) 270, 784
TscAI CASTG 3 cut(s) 28, 457, 511
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 3 cut(s) 587, 590, 735
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 5 cut(s) 137, 213, 299, 494, 610
TspMI CCCGGG 1 cut(s) 494
TspRI CASTG 3 cut(s) 28, 457, 511
XagI CCTNNNNNAGG 1 cut(s) 534
XapI RAATTY 2 cut(s) 341, 778
XmaI CCCGGG 1 cut(s) 494
XmnI GAANNNNTTC 2 cut(s) 290, 314
XspI CTAG 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.