Rw5G031510

hydroxyproline O-arabinosyltransferase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002578
Physical Location & Seq
Reverse (-)
51993601 .. 51998967
5367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G031510.1

Sequence Viewer

Length: 942 bp
ATGATCGGGAGAAAAAGTACTGGACGCGTATCACCAATACTTTTGGTGCTTTTGGCACTTGGGTTTTCCTATGCTACATATAACTTGCTAAGCATAGTAATACACAACAAAGCTTCCTACTCGGCGCTTTTGCTGGCAGATGAATCGGAATTATTAAAAGAACCAGTTATTTGGAGGGCCGAAAACGCAAGGAGAGCAGGAAATTTGAACTCAAAGTTTCATGTTGCGCTAACAGCCACTGATGCTCCCTATAGCCAATGGCAATCTCGAATTATGTATTACTGGTACAAAAAGGTACAAGGCATGCCTGGATCAGATATGGGAAATTTCACTCGAGTTTTACATTCCGGAAATGCTGACAATTTGATGGATGAGATTCCAACTGTTGTTGTTGATCCACTCCCAGAAGGCTTGGATCAGGGCTATATTGTCCTAAATAGACCATGGGCTTTTGTGCAATGGCTGGAGAAAGCAACAATTGAGGAAGAATACATTCTAATGGCCGAACCTGACCATATATTTGTAAATCCTTTGCCCAACTTGGCACATGGAAATAGTCCAGCAGGATTTCCATTTTTCTACATTAAACCAGCTGAAAATGCAAGAATAATTAGGAAATTTTATCCCAAGGAAAAAGGTCCTGTGACTGATGTTGATCCCATTGGCAATTCTCCTGTAATCATAAAGAAGTCCTTGCTGGAAGAAATTGCTCCCACATGGGTGAACATTTCTTTGAGAATGAAGGATGACATAGAGACTGATAAGGCTTTTGGATGGGTGCTTGAGATGTATGCATATGCTGTAGCATCTGCATTGCATGGTGTGCAGCATGTTCTGCGTAAAGACTTTATGCTGCAGCCGCCCAGCCCGCCTAGGAGCCCGCCCAACCCGCCTAGCGCCTATGTTCCCAATAAACGAACTAAGAGCGTTCCTAATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
No domains found.

Protein Analysis

313

Amino Acids

35.2

Weight (kDa)

7.85

Isoelectric Point (pI)

54.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HPAT PF23452 73 - 290 4.6e-94 Hydroxyproline O-arabinosyltransferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 27
AccIII TCCGGA 1 cut(s) 347
AciI CCGC 4 cut(s) 860, 869, 881, 890
AclWI GGATC 4 cut(s) 319, 389, 423, 650
AcoI YGGCCR 1 cut(s) 501
AcsI RAATTY 3 cut(s) 202, 325, 617
AfaI GTAC 3 cut(s) 19, 287, 297
AflIII ACRYGT 1 cut(s) 25
AgsI TTSAA 1 cut(s) 208
AjnI CCWGG 1 cut(s) 307
AleI CACNNNNGTG 1 cut(s) 719
AluBI AGCT 2 cut(s) 113, 593
AluI AGCT 2 cut(s) 113, 593
Alw26I GTCTC 1 cut(s) 749
AlwI GGATC 4 cut(s) 319, 389, 423, 650
AlwNI CAGNNNCTG 1 cut(s) 239
Ama87I CYCGRG 1 cut(s) 333
Aor13HI TCCGGA 1 cut(s) 347
AoxI GGCC 2 cut(s) 177, 501
ApeKI GCWGC 3 cut(s) 826, 853, 856
ApoI RAATTY 3 cut(s) 202, 325, 617
ArsI GACNNNNNNTTYG 2 cut(s) 503, 535
Asp700I GAANNNNTTC 1 cut(s) 492
AspA2I CCTAGG 1 cut(s) 872
AspLEI GCGC 3 cut(s) 127, 229, 899
AspS9I GGNCC 2 cut(s) 177, 638
AsuHPI GGTGA 2 cut(s) 24, 733
AvaI CYCGRG 1 cut(s) 333
AvaII GGWCC 1 cut(s) 638
AvrII CCTAGG 1 cut(s) 872
BanII GRGCYC 1 cut(s) 881
BbvI GCAGC 3 cut(s) 838, 840, 868
BccI CCATC 2 cut(s) 361, 768
BcgI CGANNNNNNTGC 2 cut(s) 126, 160
BciT130I CCWGG 1 cut(s) 309
BcoDI GTCTC 1 cut(s) 749
BfaI CTAG 2 cut(s) 873, 894
BfmI CTRYAG 3 cut(s) 250, 801, 854
BfoI RGCGCY 2 cut(s) 128, 900
BisI GCNGC 4 cut(s) 827, 854, 857, 860
BlnI CCTAGG 1 cut(s) 872
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 4 cut(s) 828, 855, 858, 861
BmcAI AGTACT 1 cut(s) 19
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 638
BmeT110I CYCGRG 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 177, 638
BmiI GGNNCC 1 cut(s) 878
BmrFI CCNGG 1 cut(s) 309
BmsI GCATC 2 cut(s) 232, 815
BpmI CTGGAG 1 cut(s) 485
Bpu1102I GCTNAGC 1 cut(s) 89
BpuEI CTTGAG 1 cut(s) 803
BsaBI GATNNNNATC 1 cut(s) 654
BsaJI CCNNGG 3 cut(s) 443, 627, 872
BsaWI WCCGGW 1 cut(s) 347
BsaXI ACNNNNNCTCC 3 cut(s) 31, 229, 259
Bse1I ACTGG 3 cut(s) 25, 164, 287
Bse3DI GCAATG 2 cut(s) 464, 812
Bse8I GATNNNNATC 1 cut(s) 654
BseAI TCCGGA 1 cut(s) 347
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 3 cut(s) 443, 627, 872
BseGI GGATG 3 cut(s) 376, 751, 779
BseJI GATNNNNATC 1 cut(s) 654
BseMI GCAATG 2 cut(s) 464, 812
BseNI ACTGG 3 cut(s) 25, 164, 287
BseXI GCAGC 3 cut(s) 838, 840, 868
BseYI CCCAGC 1 cut(s) 863
BsgI GTGCAG 1 cut(s) 845
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 2 cut(s) 179, 503
BsiHKCI CYCGRG 1 cut(s) 333
BsiSI CCGG 1 cut(s) 348
BsmAI GTCTC 1 cut(s) 749
BsnI GGCC 2 cut(s) 179, 503
BsoBI CYCGRG 1 cut(s) 333
Bsp1286I GDGCHC 1 cut(s) 881
Bsp13I TCCGGA 1 cut(s) 347
Bsp143I GATC 5 cut(s) 3, 311, 394, 415, 655
Bsp1720I GCTNAGC 1 cut(s) 89
Bsp19I CCATGG 1 cut(s) 443
BspACI CCGC 4 cut(s) 860, 869, 881, 890
BspANI GGCC 2 cut(s) 179, 503
BspEI TCCGGA 1 cut(s) 347
BspFNI CGCG 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 878
BspMAI CTGCAG 1 cut(s) 858
BspPI GGATC 4 cut(s) 319, 389, 423, 650
BsrDI GCAATG 2 cut(s) 464, 812
BsrI ACTGG 3 cut(s) 25, 164, 287
BssECI CCNNGG 3 cut(s) 443, 627, 872
BssMI GATC 5 cut(s) 3, 311, 394, 415, 655
BssT1I CCWWGG 3 cut(s) 443, 627, 872
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 385
BstAPI GCANNNNNTGC 2 cut(s) 823, 835
BstC8I GCNNGC 4 cut(s) 135, 305, 869, 881
BstDEI CTNAG 2 cut(s) 89, 921
BstDSI CCRYGG 1 cut(s) 443
BstF5I GGATG 3 cut(s) 376, 751, 779
BstFNI CGCG 1 cut(s) 27
BstH2I RGCGCY 2 cut(s) 128, 900
BstHHI GCGC 3 cut(s) 127, 229, 899
BstKTI GATC 5 cut(s) 6, 314, 397, 418, 658
BstMAI GTCTC 1 cut(s) 749
BstMBI GATC 5 cut(s) 3, 311, 394, 415, 655
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 2 cut(s) 307, 833
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 3 cut(s) 250, 801, 854
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 3 cut(s) 838, 840, 868
BstXI CCANNNNNNTGG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 179, 503
BtgI CCRYGG 1 cut(s) 443
BtsCI GGATG 3 cut(s) 376, 751, 779
BtsIMutI CAGTG 1 cut(s) 237
Cac8I GCNNGC 4 cut(s) 135, 305, 869, 881
CaiI CAGNNNCTG 1 cut(s) 239
CfoI GCGC 3 cut(s) 127, 229, 899
Cfr13I GGNCC 2 cut(s) 177, 638
CseI GACGC 1 cut(s) 33
Csp6I GTAC 3 cut(s) 18, 286, 296
CviAII CATG 7 cut(s) 221, 304, 444, 548, 717, 818, 830
CviQI GTAC 3 cut(s) 18, 286, 296
DdeI CTNAG 2 cut(s) 89, 921
DpnI GATC 5 cut(s) 5, 313, 396, 417, 657
DpnII GATC 5 cut(s) 3, 311, 394, 415, 655
EaeI YGGCCR 1 cut(s) 501
Eco130I CCWWGG 3 cut(s) 443, 627, 872
Eco24I GRGCYC 1 cut(s) 881
Eco47I GGWCC 1 cut(s) 638
Eco88I CYCGRG 1 cut(s) 333
EcoO109I RGGNCCY 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 3 cut(s) 443, 627, 872
EcoT22I ATGCAT 1 cut(s) 796
EcoT38I GRGCYC 1 cut(s) 881
ErhI CCWWGG 3 cut(s) 443, 627, 872
FaeI CATG 7 cut(s) 224, 307, 447, 551, 720, 821, 833
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FatI CATG 7 cut(s) 220, 303, 443, 547, 716, 817, 829
FauI CCCGC 3 cut(s) 876, 888, 897
FauNDI CATATG 1 cut(s) 796
Fnu4HI GCNGC 4 cut(s) 827, 854, 857, 860
FokI GGATG 3 cut(s) 383, 758, 786
FriOI GRGCYC 1 cut(s) 881
Fsp4HI GCNGC 4 cut(s) 827, 854, 857, 860
FspBI CTAG 2 cut(s) 873, 894
GlaI GCGC 3 cut(s) 126, 228, 898
GluI GCNGC 4 cut(s) 827, 854, 857, 860
GsaI CCCAGC 1 cut(s) 867
GsuI CTGGAG 1 cut(s) 485
HaeII RGCGCY 2 cut(s) 128, 900
HaeIII GGCC 2 cut(s) 179, 503
HapII CCGG 1 cut(s) 348
HgaI GACGC 1 cut(s) 33
HhaI GCGC 3 cut(s) 127, 229, 899
Hin1II CATG 7 cut(s) 224, 307, 447, 551, 720, 821, 833
Hin6I GCGC 3 cut(s) 125, 227, 897
HinP1I GCGC 3 cut(s) 125, 227, 897
HindIII AAGCTT 1 cut(s) 111
HinfI GANTC 2 cut(s) 143, 376
HpaII CCGG 1 cut(s) 348
HphI GGTGA 2 cut(s) 24, 733
Hpy166II GTNNAC 1 cut(s) 724
Hpy188I TCNGA 2 cut(s) 148, 316
Hpy188III TCNNGA 3 cut(s) 7, 267, 348
Hpy8I GTNNAC 1 cut(s) 724
HpyAV CCTTC 2 cut(s) 401, 736
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4V TGCA 7 cut(s) 457, 602, 794, 812, 817, 826, 856
HpyF3I CTNAG 2 cut(s) 89, 921
Hsp92II CATG 7 cut(s) 224, 307, 447, 551, 720, 821, 833
HspAI GCGC 3 cut(s) 125, 227, 897
Kpn2I TCCGGA 1 cut(s) 347
Kzo9I GATC 5 cut(s) 3, 311, 394, 415, 655
LmnI GCTCC 3 cut(s) 250, 715, 876
Lsp1109I GCAGC 3 cut(s) 838, 840, 868
LweI GCATC 2 cut(s) 232, 815
MaeI CTAG 2 cut(s) 873, 894
MaeIII GTNAC 1 cut(s) 643
MalI GATC 5 cut(s) 5, 313, 396, 417, 657
MboI GATC 5 cut(s) 3, 311, 394, 415, 655
MboII GAAGA 2 cut(s) 497, 713
MfeI CAATTG 1 cut(s) 477
MhlI GDGCHC 1 cut(s) 881
MluI ACGCGT 1 cut(s) 25
MmeI TCCRAC 1 cut(s) 404
MnlI CCTC 2 cut(s) 168, 475
Mph1103I ATGCAT 1 cut(s) 796
MroI TCCGGA 1 cut(s) 347
MroXI GAANNNNTTC 1 cut(s) 492
MseI TTAA 2 cut(s) 155, 585
MslI CAYNNNNRTG 2 cut(s) 497, 719
MspA1I CMGCKG 1 cut(s) 593
MspI CCGG 1 cut(s) 348
MspR9I CCNGG 1 cut(s) 309
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 27
NcoI CCATGG 1 cut(s) 443
NdeI CATATG 1 cut(s) 796
NdeII GATC 5 cut(s) 3, 311, 394, 415, 655
NlaIII CATG 7 cut(s) 224, 307, 447, 551, 720, 821, 833
NlaIV GGNNCC 1 cut(s) 878
NmeAIII GCCGAG 1 cut(s) 101
NmuCI GTSAC 1 cut(s) 643
NsiI ATGCAT 1 cut(s) 796
NspI RCATGY 2 cut(s) 307, 833
OliI CACNNNNGTG 1 cut(s) 719
PaeI GCATGC 1 cut(s) 307
PaeR7I CTCGAG 1 cut(s) 333
PdmI GAANNNNTTC 1 cut(s) 492
PfeI GAWTC 2 cut(s) 143, 376
PkrI GCNGC 4 cut(s) 828, 855, 858, 861
PpuMI RGGWCCY 1 cut(s) 638
Psp5II RGGWCCY 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 863
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 1 cut(s) 878
PspPI GGNCC 2 cut(s) 177, 638
PspPPI RGGWCCY 1 cut(s) 638
PspXI VCTCGAGB 1 cut(s) 333
PstI CTGCAG 1 cut(s) 858
PstNI CAGNNNCTG 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 3 cut(s) 19, 287, 297
RsaNI GTAC 3 cut(s) 18, 286, 296
RseI CAYNNNNRTG 2 cut(s) 497, 719
SaqAI TTAA 2 cut(s) 155, 585
SatI GCNGC 4 cut(s) 827, 854, 857, 860
Sau3AI GATC 5 cut(s) 3, 311, 394, 415, 655
Sau96I GGNCC 2 cut(s) 177, 638
ScaI AGTACT 1 cut(s) 19
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 881
SetI ASST 5 cut(s) 115, 297, 511, 595, 640
SfaNI GCATC 2 cut(s) 232, 815
SfcI CTRYAG 3 cut(s) 250, 801, 854
Sfr274I CTCGAG 1 cut(s) 333
SinI GGWCC 1 cut(s) 638
SlaI CTCGAG 1 cut(s) 333
SmiMI CAYNNNNRTG 2 cut(s) 497, 719
SmlI CTYRAG 2 cut(s) 333, 782
SmoI CTYRAG 2 cut(s) 333, 782
SphI GCATGC 1 cut(s) 307
SsiI CCGC 4 cut(s) 860, 869, 881, 890
SspMI CTAG 2 cut(s) 873, 894
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 3 cut(s) 443, 627, 872
TaaI ACNGT 1 cut(s) 385
TaqI TCGA 2 cut(s) 268, 334
TatI WGTACW 1 cut(s) 17
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 2 cut(s) 143, 376
Tru1I TTAA 2 cut(s) 155, 585
Tru9I TTAA 2 cut(s) 155, 585
TscAI CASTG 1 cut(s) 244
TseFI GTSAC 1 cut(s) 643
TseI GCWGC 3 cut(s) 826, 853, 856
Tsp45I GTSAC 1 cut(s) 643
TspDTI ATGAA 3 cut(s) 156, 209, 755
TspRI CASTG 1 cut(s) 244
VpaK11BI GGWCC 1 cut(s) 638
XapI RAATTY 3 cut(s) 202, 325, 617
XceI RCATGY 2 cut(s) 307, 833
XhoI CTCGAG 1 cut(s) 333
XmaJI CCTAGG 1 cut(s) 872
XmnI GAANNNNTTC 1 cut(s) 492
XspI CTAG 2 cut(s) 873, 894
ZrmI AGTACT 1 cut(s) 19
Zsp2I ATGCAT 1 cut(s) 796
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.