Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002578

Physical Location & Seq

Genomic Coordinates Reverse (-)

19875069 .. 19880645

Gene Structure 5577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G266100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGATTGGGAGAAAAGGCATGGGGCGTGCATCACCAATACTTTTGGTGCTTTTGGCACTTGGGTTTTTCTTTGCATCTTATAATTTGTTAACTGTGGTAATACACAACAAGGCTTCATACTCGGGCCTTTGGGGGGCAGATCGGTTGATAGAGCCCGTGATTCAGAGGCATGGGAACGCGAAGAATTCGAAATATCATGTTGCTCTTACAGCAACTGATGCTCCCTATAGCCAATGGCAGTGTCGGATTATGTATTACTGGTACAAGAAGGTAAAAGACATGCCTGGATCAGATATGGGAAAGTTCACACGAGTTTTGCATTCTGGAAATGCTGACAATTTGATGGAGGAGATTCCAACAGTTGTGGTTGATCCTCTTCCAGGGGGCTTGGATCGGGGCTATATTGTCCTAAATAGACCATGGGCTTTTGTGCAATGGCTAGAGAAAACAACAGTCGAGGAAGAATACATTCTAATGGCCGAACCTGACCACATATTTGTAAATCCCTTGCCAAACTTGGCACATGGAAACAGTCCAGCAGGGTATCCATTTTTCTACATTATACCAGCTGAAAATGAGAAAATAATTAGGAAATTTTATCCTGAGGAAAAAGGTCCTGTGACTGATATTGATCCAATTGGCAATTCTCCTGTAATCATAAAGAAGTCCTTGCTGGAGGAAATTGCTCCCACATGGGTGAATGTTTCTTTGAGAATGAAAGATGACCCAGAGACTGATAAGGCCTTTGGATGGGTGCTTGAGATGTATGCATATGCTGTAGCATCTGCATTGCATGGAGTGCGGCATATTCTTCGTAAAGACTTCATGCTGCAGCCTCCATGGGATTTGGAAGTTGGAAAGACGTTCATCATCCATTTTACTTACGGATGCGACTATAATTTAAAGGGTGAACTGACTTATGGCAAGATTGGAGAATGGCGTTTTGACAAGAGATCATATCTTAGTGGTCCTCCACCAAGAAACCTCTCGTTGCCCCCTCCAGGAGTTCCTGAAAGTGTGATAAGGCTCGTGAAAATGGTTAATGAGGCTACAGCAAACATTCCTGGGTGGAACACATTAACTAGTGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

364

Amino Acids

41.03

Weight (kDa)

7.13

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25260 AT5G13500 AT5G13500 AT5G13500
fragaria_vesca	FvH4_7g03230
malus_domestica	MD02G1284100.v1.1 MD03G1165800.v1.1 MD07G1050100.v1.1
prunus_persica	Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.4G266100_v2.0.a1 Prupe.4G266100_v2.0.a1
pyrus_communis	pycom02g24210 pycom03g12050 pycom07g03590
rosa_chinensis	RchiOBHm_Chr1g0325271 RchiOBHm_Chr5g0050591
rosa_laevigata	RLG00000030148 RLG00000034710
rosa_multiflora	Rmu_sc0001654.1_g000029 Rmu_sc0001954.1_g000008 Rmu_sc0007742.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030260 Rroxscaffold_4G00324840
rosa_rugosa	Rorug01G0050900 Rorug01G0051000 Rorug01G0051100 Rorug05G0262100
rosa_samantha	Rh1AG066300 Rh1BG054400 Rh1CG067700 Rh1DG072500 Rh5AG334000 Rh5AG334100 Rh5BG343600 Rh5CG371200 Rh5DG356400
rosa_wichuraiana	Rw1G005540 Rw5G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
AccII	CGCG	1 cut(s)	179
AciI	CCGC	1 cut(s)	802
AclWI	GGATC	4 cut(s)	295, 365, 399, 626
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	2 cut(s)	184, 593
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	4 cut(s)	133, 380, 750, 1001
AhlI	ACTAGT	1 cut(s)	1082
AjnI	CCWGG	4 cut(s)	283, 379, 1000, 1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	628, 660
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	1 cut(s)	569
AluI	AGCT	1 cut(s)	569
Alw26I	GTCTC	1 cut(s)	725
AlwI	GGATC	4 cut(s)	295, 365, 399, 626
AlwNI	CAGNNNCTG	2 cut(s)	215, 734
Ama87I	CYCGRG	1 cut(s)	121
AoxI	GGCC	3 cut(s)	124, 477, 741
ApeKI	GCWGC	2 cut(s)	829, 832
ApoI	RAATTY	2 cut(s)	184, 593
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
Asp700I	GAANNNNTTC	1 cut(s)	468
AspS9I	GGNCC	3 cut(s)	124, 614, 968
AsuHPI	GGTGA	3 cut(s)	24, 709, 920
AsuII	TTCGAA	1 cut(s)	188
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	2 cut(s)	614, 968
AxyI	CCTNAGG	1 cut(s)	603
BanII	GRGCYC	1 cut(s)	156
BauI	CACGAG	2 cut(s)	309, 1028
BbvI	GCAGC	2 cut(s)	816, 844
BccI	CCATC	2 cut(s)	337, 744
BcgI	CGANNNNNNTGC	2 cut(s)	794, 828
BciT130I	CCWGG	4 cut(s)	285, 381, 1002, 1065
BciVI	GTATCC	1 cut(s)	555
BcoDI	GTCTC	1 cut(s)	725
BcuI	ACTAGT	1 cut(s)	1082
BfaI	CTAG	2 cut(s)	440, 1083
BfmI	CTRYAG	4 cut(s)	226, 777, 830, 1050
BfuI	GTATCC	1 cut(s)	555
BisI	GCNGC	3 cut(s)	803, 830, 833
BlsI	GCNGC	3 cut(s)	804, 831, 834
Bme1390I	CCNGG	4 cut(s)	285, 381, 1002, 1065
Bme18I	GGWCC	2 cut(s)	614, 968
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	124, 614, 968
BmrFI	CCNGG	4 cut(s)	285, 381, 1002, 1065
BmsI	GCATC	5 cut(s)	38, 83, 208, 791, 878
BpmI	CTGGAG	2 cut(s)	695, 984
Bpu14I	TTCGAA	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	779
BsaBI	GATNNNNATC	1 cut(s)	630
BsaJI	CCNNGG	4 cut(s)	380, 419, 839, 1064
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 380, 750, 1001
Bse1I	ACTGG	1 cut(s)	263
Bse21I	CCTNAGG	1 cut(s)	603
Bse3DI	GCAATG	2 cut(s)	440, 788
Bse8I	GATNNNNATC	1 cut(s)	630
BseBI	CCWGG	4 cut(s)	285, 381, 1002, 1065
BseDI	CCNNGG	4 cut(s)	380, 419, 839, 1064
BseGI	GGATG	3 cut(s)	755, 870, 893
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	4 cut(s)	133, 380, 750, 1001
BseMI	GCAATG	2 cut(s)	440, 788
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	1 cut(s)	263
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	816, 844
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	3 cut(s)	126, 479, 743
BsiHKCI	CYCGRG	1 cut(s)	121
BslI	CCNNNNNNNGG	4 cut(s)	133, 380, 750, 1001
BsmAI	GTCTC	1 cut(s)	725
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	3 cut(s)	126, 479, 743
BsoBI	CYCGRG	1 cut(s)	121
Bsp119I	TTCGAA	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	6 cut(s)	139, 287, 370, 391, 631, 953
Bsp19I	CCATGG	2 cut(s)	419, 839
BspACI	CCGC	1 cut(s)	802
BspANI	GGCC	3 cut(s)	126, 479, 743
BspCNI	CTCAG	1 cut(s)	595
BspFNI	CGCG	1 cut(s)	179
BspMAI	CTGCAG	1 cut(s)	834
BspPI	GGATC	4 cut(s)	295, 365, 399, 626
BspT104I	TTCGAA	1 cut(s)	188
BsrDI	GCAATG	2 cut(s)	440, 788
BsrI	ACTGG	1 cut(s)	263
BssECI	CCNNGG	4 cut(s)	380, 419, 839, 1064
BssMI	GATC	6 cut(s)	139, 287, 370, 391, 631, 953
BssSI	CACGAG	2 cut(s)	309, 1028
BssT1I	CCWWGG	2 cut(s)	419, 839
Bst2BI	CACGAG	2 cut(s)	309, 1028
Bst2UI	CCWGG	4 cut(s)	285, 381, 1002, 1065
Bst4CI	ACNGT	4 cut(s)	94, 361, 454, 533
Bst6I	CTCTTC	1 cut(s)	381
BstAPI	GCANNNNNTGC	2 cut(s)	218, 799
BstBI	TTCGAA	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	603, 962
BstDSI	CCRYGG	2 cut(s)	419, 839
BstENI	CCTNNNNNAGG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	755, 870, 893
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	6 cut(s)	142, 290, 373, 394, 634, 956
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	6 cut(s)	139, 287, 370, 391, 631, 953
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 218, 799
BstNI	CCWGG	4 cut(s)	285, 381, 1002, 1065
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	4 cut(s)	283, 379, 1000, 1063
BstSFI	CTRYAG	4 cut(s)	226, 777, 830, 1050
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	816, 844
Bsu36I	CCTNAGG	1 cut(s)	603
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	126, 479, 743
BtgI	CCRYGG	2 cut(s)	419, 839
BtsCI	GGATG	3 cut(s)	755, 870, 893
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	2 cut(s)	215, 734
Cfr13I	GGNCC	3 cut(s)	124, 614, 968
Csp6I	GTAC	1 cut(s)	262
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	2 cut(s)	603, 962
DpnI	GATC	6 cut(s)	141, 289, 372, 393, 633, 955
DpnII	GATC	6 cut(s)	139, 287, 370, 391, 631, 953
DraI	TTTAAA	1 cut(s)	903
EaeI	YGGCCR	1 cut(s)	477
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco130I	CCWWGG	2 cut(s)	419, 839
Eco147I	AGGCCT	1 cut(s)	743
Eco24I	GRGCYC	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	614, 968
Eco81I	CCTNAGG	1 cut(s)	603
Eco88I	CYCGRG	1 cut(s)	121
EcoNI	CCTNNNNNAGG	1 cut(s)	378
EcoO109I	RGGNCCY	1 cut(s)	614
EcoRI	GAATTC	1 cut(s)	184
EcoRII	CCWGG	4 cut(s)	283, 379, 1000, 1063
EcoT14I	CCWWGG	2 cut(s)	419, 839
EcoT22I	ATGCAT	1 cut(s)	772
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	2 cut(s)	419, 839
FalI	AAGNNNNNCTT	2 cut(s)	653, 685
FauNDI	CATATG	1 cut(s)	772
Fnu4HI	GCNGC	3 cut(s)	803, 830, 833
FokI	GGATG	3 cut(s)	762, 857, 900
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	803, 830, 833
FspBI	CTAG	2 cut(s)	440, 1083
GluI	GCNGC	3 cut(s)	803, 830, 833
GsuI	CTGGAG	2 cut(s)	695, 984
HaeIII	GGCC	3 cut(s)	126, 479, 743
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	160, 352
HpaI	GTTAAC	1 cut(s)	90
HphI	GGTGA	3 cut(s)	24, 709, 920
Hpy166II	GTNNAC	3 cut(s)	90, 306, 911
Hpy188I	TCNGA	3 cut(s)	165, 246, 292
Hpy188III	TCNNGA	4 cut(s)	324, 602, 1010, 1030
Hpy8I	GTNNAC	3 cut(s)	90, 306, 911
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	4 cut(s)	94, 361, 454, 533
HpyCH4IV	ACGT	1 cut(s)	863
HpyCH4V	TGCA	8 cut(s)	29, 74, 319, 433, 770, 788, 793, 832
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 218, 799
HpyF3I	CTNAG	2 cut(s)	603, 962
HpySE526I	ACGT	1 cut(s)	863
KspAI	GTTAAC	1 cut(s)	90
Kzo9I	GATC	6 cut(s)	139, 287, 370, 391, 631, 953
LmnI	GCTCC	2 cut(s)	226, 691
Lsp1109I	GCAGC	2 cut(s)	816, 844
LweI	GCATC	5 cut(s)	38, 83, 208, 791, 878
MaeI	CTAG	2 cut(s)	440, 1083
MaeII	ACGT	1 cut(s)	863
MaeIII	GTNAC	1 cut(s)	619
MalI	GATC	6 cut(s)	141, 289, 372, 393, 633, 955
MboI	GATC	6 cut(s)	139, 287, 370, 391, 631, 953
MboII	GAAGA	4 cut(s)	193, 368, 473, 803
MfeI	CAATTG	1 cut(s)	636
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	9 cut(s)	82, 184, 337, 585, 593, 636, 643, 681, 898
MmeI	TCCRAC	3 cut(s)	224, 380, 835
Mph1103I	ATGCAT	1 cut(s)	772
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	4 cut(s)	89, 902, 1041, 1079
MslI	CAYNNNNRTG	2 cut(s)	473, 695
MspA1I	CMGCKG	1 cut(s)	569
MspR9I	CCNGG	4 cut(s)	285, 381, 1002, 1065
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	4 cut(s)	285, 381, 1002, 1065
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	3 cut(s)	209, 218, 799
NcoI	CCATGG	2 cut(s)	419, 839
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	6 cut(s)	139, 287, 370, 391, 631, 953
NmuCI	GTSAC	1 cut(s)	619
NsiI	ATGCAT	1 cut(s)	772
NspI	RCATGY	1 cut(s)	283
NspV	TTCGAA	1 cut(s)	188
OliI	CACNNNNGTG	1 cut(s)	695
PceI	AGGCCT	1 cut(s)	743
PctI	GAATGC	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	160, 352
PfoI	TCCNGGA	1 cut(s)	1000
PkrI	GCNGC	3 cut(s)	804, 831, 834
PpuMI	RGGWCCY	1 cut(s)	614
PsiI	TTATAA	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	614
Psp6I	CCWGG	4 cut(s)	283, 379, 1000, 1063
PspGI	CCWGG	4 cut(s)	283, 379, 1000, 1063
PspPI	GGNCC	3 cut(s)	124, 614, 968
PspPPI	RGGWCCY	1 cut(s)	614
PstI	CTGCAG	1 cut(s)	834
PstNI	CAGNNNCTG	2 cut(s)	215, 734
PvuII	CAGCTG	1 cut(s)	569
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	2 cut(s)	473, 695
SaqAI	TTAA	4 cut(s)	89, 902, 1041, 1079
SatI	GCNGC	3 cut(s)	803, 830, 833
Sau3AI	GATC	6 cut(s)	139, 287, 370, 391, 631, 953
Sau96I	GGNCC	3 cut(s)	124, 614, 968
ScrFI	CCNGG	4 cut(s)	285, 381, 1002, 1065
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	6 cut(s)	273, 487, 571, 616, 866, 987
SfaNI	GCATC	5 cut(s)	38, 83, 208, 791, 878
SfcI	CTRYAG	4 cut(s)	226, 777, 830, 1050
SfuI	TTCGAA	1 cut(s)	188
SinI	GGWCC	2 cut(s)	614, 968
SmiMI	CAYNNNNRTG	2 cut(s)	473, 695
SmlI	CTYRAG	1 cut(s)	758
SmoI	CTYRAG	1 cut(s)	758
SpeI	ACTAGT	1 cut(s)	1082
Sse9I	AATT	9 cut(s)	82, 184, 337, 585, 593, 636, 643, 681, 898
SseBI	AGGCCT	1 cut(s)	743
SsiI	CCGC	1 cut(s)	802
SspMI	CTAG	2 cut(s)	440, 1083
StuI	AGGCCT	1 cut(s)	743
StyD4I	CCNGG	4 cut(s)	283, 379, 1000, 1063
StyI	CCWWGG	2 cut(s)	419, 839
TaaI	ACNGT	4 cut(s)	94, 361, 454, 533
TaiI	ACGT	1 cut(s)	866
TaqI	TCGA	2 cut(s)	188, 456
TasI	AATT	9 cut(s)	82, 184, 337, 585, 593, 636, 643, 681, 898
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	2 cut(s)	160, 352
Tru1I	TTAA	4 cut(s)	89, 902, 1041, 1079
Tru9I	TTAA	4 cut(s)	89, 902, 1041, 1079
TscAI	CASTG	1 cut(s)	245
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	2 cut(s)	829, 832
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	4 cut(s)	105, 731, 814, 856
TspGWI	ACGGA	1 cut(s)	900
TspRI	CASTG	1 cut(s)	245
VpaK11BI	GGWCC	2 cut(s)	614, 968
XagI	CCTNNNNNAGG	1 cut(s)	378
XapI	RAATTY	2 cut(s)	184, 593
XceI	RCATGY	1 cut(s)	283
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	2 cut(s)	440, 1083
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.