Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001954.1

Orthogroup ID

OG0002578

Physical Location & Seq

Genomic Coordinates Reverse (-)

38737 .. 43285

Gene Structure 4549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001954.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atgatcgggagaaaaagtactggacgcgtatcaccaatacttttggtgcttttggcacttgggttttcctatgctacatataacttgctaagcatagtaatacacaacaaagcttcctactcggcgcttttgctggcagatgaatcggaattattaaaagaaccagttatttggagggccgaaaacacaaggagagcaggaaatttgaactcaaagtttcatgttgcgctaacagccactgatgctccctatagccaatggcaatctcgaattatgtattactggtacaaaaaggtacaaggcatgcctggatcagatatgggaaatttcactcgagttttacattccggaaatgctgacaatttgatggatgagattccaactgttgttgttgatccactcccagaaggcttggatcagggctatattgtcctaaatagaccatgggcttttgtgcaatggctggagaaagcaacaattgaggaagaatacattctaatggccgaacctgaccatatatttgtaaatcctttgcccaacttggcacatggaaatagtccagcaggatttccatttttctacattaaaccagctgaaaatgcaagaataattaggaaattttatcccaaggaaaaaggtcctgtgactgatgttgatcccattggcaattctcctgtaatcataaagaagtccttgctggaagaaattgctcccacatgggtgaacatttctttgagaatgaaggatgacgtagagactgataaggcttttggatgggtgcttgagatgtatgcatatgctgtagcatctgcattgcatggtgtgcagcatgttcttcgtaaagactttatgctgcagcctccatgggatttggaagttgggaagaggttcatcatccattatacatatggatgcgactacaatttaaagggggaactgacttatgggaaggttggagaatggcgttttgacaagagatcatatctcagtggtcctccaccaagaaacctctccttgccccctccaggagttcctgaaagtgtggtaaggcttgtgaagatggttaatgaggcaactgccaacattcctgggtgggacattgactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

368

Amino Acids

41.62

Weight (kDa)

6.27

Isoelectric Point (pI)

46.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25260 AT5G13500 AT5G13500 AT5G13500
fragaria_vesca	FvH4_7g03230
malus_domestica	MD02G1284100.v1.1 MD03G1165800.v1.1 MD07G1050100.v1.1
prunus_persica	Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.4G266100_v2.0.a1 Prupe.4G266100_v2.0.a1
pyrus_communis	pycom02g24210 pycom03g12050 pycom07g03590
rosa_chinensis	RchiOBHm_Chr1g0325271 RchiOBHm_Chr5g0050591
rosa_laevigata	RLG00000030148 RLG00000034710
rosa_multiflora	Rmu_sc0001654.1_g000029 Rmu_sc0001954.1_g000008 Rmu_sc0007742.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030260 Rroxscaffold_4G00324840
rosa_rugosa	Rorug01G0050900 Rorug01G0051000 Rorug01G0051100 Rorug05G0262100
rosa_samantha	Rh1AG066300 Rh1BG054400 Rh1CG067700 Rh1DG072500 Rh5AG334000 Rh5AG334100 Rh5BG343600 Rh5CG371200 Rh5DG356400
rosa_wichuraiana	Rw1G005540 Rw5G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	27
AccIII	TCCGGA	1 cut(s)	347
AclWI	GGATC	4 cut(s)	319, 389, 423, 650
AcoI	YGGCCR	1 cut(s)	501
AcsI	RAATTY	3 cut(s)	202, 325, 617
AfaI	GTAC	3 cut(s)	19, 287, 297
AfiI	CCNNNNNNNGG	1 cut(s)	1025
AflIII	ACRYGT	1 cut(s)	25
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	3 cut(s)	307, 1024, 1087
AleI	CACNNNNGTG	1 cut(s)	719
AluBI	AGCT	2 cut(s)	113, 593
AluI	AGCT	2 cut(s)	113, 593
Alw26I	GTCTC	1 cut(s)	749
AlwI	GGATC	4 cut(s)	319, 389, 423, 650
AlwNI	CAGNNNCTG	1 cut(s)	239
Ama87I	CYCGRG	1 cut(s)	333
Aor13HI	TCCGGA	1 cut(s)	347
AoxI	GGCC	2 cut(s)	177, 501
ApeKI	GCWGC	3 cut(s)	826, 853, 856
ApoI	RAATTY	3 cut(s)	202, 325, 617
ArsI	GACNNNNNNTTYG	2 cut(s)	503, 535
Asp700I	GAANNNNTTC	2 cut(s)	492, 887
AspLEI	GCGC	2 cut(s)	127, 229
AspS9I	GGNCC	3 cut(s)	177, 638, 992
AsuHPI	GGTGA	2 cut(s)	24, 733
AvaI	CYCGRG	1 cut(s)	333
AvaII	GGWCC	2 cut(s)	638, 992
BbvI	GCAGC	3 cut(s)	838, 840, 868
BccI	CCATC	3 cut(s)	361, 768, 1054
BcgI	CGANNNNNNTGC	4 cut(s)	126, 160, 818, 852
BciT130I	CCWGG	3 cut(s)	309, 1026, 1089
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	1 cut(s)	1105
BfmI	CTRYAG	3 cut(s)	250, 801, 854
BfoI	RGCGCY	1 cut(s)	128
BisI	GCNGC	3 cut(s)	827, 854, 857
BlpI	GCTNAGC	1 cut(s)	89
BlsI	GCNGC	3 cut(s)	828, 855, 858
BmcAI	AGTACT	1 cut(s)	19
Bme1390I	CCNGG	3 cut(s)	309, 1026, 1089
Bme18I	GGWCC	2 cut(s)	638, 992
BmeT110I	CYCGRG	1 cut(s)	333
BmgT120I	GGNCC	3 cut(s)	177, 638, 992
BmrFI	CCNGG	3 cut(s)	309, 1026, 1089
BmsI	GCATC	3 cut(s)	232, 815, 902
BpmI	CTGGAG	2 cut(s)	485, 1008
Bpu1102I	GCTNAGC	1 cut(s)	89
BpuEI	CTTGAG	1 cut(s)	803
BsaBI	GATNNNNATC	1 cut(s)	654
BsaJI	CCNNGG	4 cut(s)	443, 627, 863, 1088
BsaWI	WCCGGW	1 cut(s)	347
BsaXI	ACNNNNNCTCC	3 cut(s)	31, 229, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	1025
Bse1I	ACTGG	3 cut(s)	25, 164, 287
Bse3DI	GCAATG	2 cut(s)	464, 812
Bse8I	GATNNNNATC	1 cut(s)	654
BseAI	TCCGGA	1 cut(s)	347
BseBI	CCWGG	3 cut(s)	309, 1026, 1089
BseDI	CCNNGG	4 cut(s)	443, 627, 863, 1088
BseGI	GGATG	5 cut(s)	376, 751, 779, 894, 917
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	1 cut(s)	1025
BseMI	GCAATG	2 cut(s)	464, 812
BseMII	CTCAG	1 cut(s)	1000
BseNI	ACTGG	3 cut(s)	25, 164, 287
BseXI	GCAGC	3 cut(s)	838, 840, 868
BsgI	GTGCAG	1 cut(s)	845
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	179, 503
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	1025
BsmAI	GTCTC	1 cut(s)	749
BsnI	GGCC	2 cut(s)	179, 503
BsoBI	CYCGRG	1 cut(s)	333
Bsp13I	TCCGGA	1 cut(s)	347
Bsp143I	GATC	6 cut(s)	3, 311, 394, 415, 655, 977
Bsp1720I	GCTNAGC	1 cut(s)	89
Bsp19I	CCATGG	2 cut(s)	443, 863
BspANI	GGCC	2 cut(s)	179, 503
BspCNI	CTCAG	1 cut(s)	999
BspEI	TCCGGA	1 cut(s)	347
BspFNI	CGCG	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	858
BspPI	GGATC	4 cut(s)	319, 389, 423, 650
BsrDI	GCAATG	2 cut(s)	464, 812
BsrI	ACTGG	3 cut(s)	25, 164, 287
BssECI	CCNNGG	4 cut(s)	443, 627, 863, 1088
BssMI	GATC	6 cut(s)	3, 311, 394, 415, 655, 977
BssT1I	CCWWGG	3 cut(s)	443, 627, 863
Bst2UI	CCWGG	3 cut(s)	309, 1026, 1089
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	878
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstC8I	GCNNGC	2 cut(s)	135, 305
BstDEI	CTNAG	2 cut(s)	89, 986
BstDSI	CCRYGG	2 cut(s)	443, 863
BstF5I	GGATG	5 cut(s)	376, 751, 779, 894, 917
BstFNI	CGCG	1 cut(s)	27
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	2 cut(s)	127, 229
BstKTI	GATC	6 cut(s)	6, 314, 397, 418, 658, 980
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	6 cut(s)	3, 311, 394, 415, 655, 977
BstMWI	GCNNNNNNNGC	4 cut(s)	233, 242, 599, 823
BstNI	CCWGG	3 cut(s)	309, 1026, 1089
BstNSI	RCATGY	2 cut(s)	307, 833
BstSCI	CCNGG	3 cut(s)	307, 1024, 1087
BstSFI	CTRYAG	3 cut(s)	250, 801, 854
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	838, 840, 868
BstXI	CCANNNNNNTGG	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	179, 503
BtgI	CCRYGG	2 cut(s)	443, 863
BtsCI	GGATG	5 cut(s)	376, 751, 779, 894, 917
BtsIMutI	CAGTG	2 cut(s)	237, 994
Cac8I	GCNNGC	2 cut(s)	135, 305
CaiI	CAGNNNCTG	1 cut(s)	239
CfoI	GCGC	2 cut(s)	127, 229
Cfr13I	GGNCC	3 cut(s)	177, 638, 992
CseI	GACGC	1 cut(s)	33
Csp6I	GTAC	3 cut(s)	18, 286, 296
CviAII	CATG	8 cut(s)	221, 304, 444, 548, 717, 818, 830, 864
CviQI	GTAC	3 cut(s)	18, 286, 296
DdeI	CTNAG	2 cut(s)	89, 986
DpnI	GATC	6 cut(s)	5, 313, 396, 417, 657, 979
DpnII	GATC	6 cut(s)	3, 311, 394, 415, 655, 977
DraI	TTTAAA	1 cut(s)	927
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	878
EarI	CTCTTC	1 cut(s)	878
Eco130I	CCWWGG	3 cut(s)	443, 627, 863
Eco47I	GGWCC	2 cut(s)	638, 992
Eco88I	CYCGRG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	638
EcoRII	CCWGG	3 cut(s)	307, 1024, 1087
EcoT14I	CCWWGG	3 cut(s)	443, 627, 863
EcoT22I	ATGCAT	1 cut(s)	796
ErhI	CCWWGG	3 cut(s)	443, 627, 863
FaeI	CATG	8 cut(s)	224, 307, 447, 551, 720, 821, 833, 867
FalI	AAGNNNNNCTT	2 cut(s)	677, 709
FatI	CATG	8 cut(s)	220, 303, 443, 547, 716, 817, 829, 863
FauNDI	CATATG	2 cut(s)	796, 907
Fnu4HI	GCNGC	3 cut(s)	827, 854, 857
FokI	GGATG	5 cut(s)	383, 758, 786, 881, 924
Fsp4HI	GCNGC	3 cut(s)	827, 854, 857
FspBI	CTAG	1 cut(s)	1105
GlaI	GCGC	2 cut(s)	126, 228
GluI	GCNGC	3 cut(s)	827, 854, 857
GsuI	CTGGAG	2 cut(s)	485, 1008
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	2 cut(s)	179, 503
HapII	CCGG	1 cut(s)	348
HgaI	GACGC	1 cut(s)	33
HhaI	GCGC	2 cut(s)	127, 229
Hin1II	CATG	8 cut(s)	224, 307, 447, 551, 720, 821, 833, 867
Hin6I	GCGC	2 cut(s)	125, 227
HinP1I	GCGC	2 cut(s)	125, 227
HindIII	AAGCTT	1 cut(s)	111
HinfI	GANTC	2 cut(s)	143, 376
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	2 cut(s)	24, 733
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	2 cut(s)	148, 316
Hpy188III	TCNNGA	4 cut(s)	7, 267, 348, 1034
Hpy8I	GTNNAC	1 cut(s)	724
HpyAV	CCTTC	3 cut(s)	401, 736, 943
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	750
HpyCH4V	TGCA	7 cut(s)	457, 602, 794, 812, 817, 826, 856
HpyF10VI	GCNNNNNNNGC	4 cut(s)	233, 242, 599, 823
HpyF3I	CTNAG	2 cut(s)	89, 986
HpySE526I	ACGT	1 cut(s)	750
Hsp92II	CATG	8 cut(s)	224, 307, 447, 551, 720, 821, 833, 867
HspAI	GCGC	2 cut(s)	125, 227
Kpn2I	TCCGGA	1 cut(s)	347
Kzo9I	GATC	6 cut(s)	3, 311, 394, 415, 655, 977
LmnI	GCTCC	2 cut(s)	250, 715
Lsp1109I	GCAGC	3 cut(s)	838, 840, 868
LweI	GCATC	3 cut(s)	232, 815, 902
MaeI	CTAG	1 cut(s)	1105
MaeII	ACGT	1 cut(s)	750
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	6 cut(s)	5, 313, 396, 417, 657, 979
MboI	GATC	6 cut(s)	3, 311, 394, 415, 655, 977
MboII	GAAGA	5 cut(s)	497, 713, 827, 895, 1069
MfeI	CAATTG	1 cut(s)	477
MluI	ACGCGT	1 cut(s)	25
MmeI	TCCRAC	2 cut(s)	404, 934
MnlI	CCTC	8 cut(s)	168, 475, 870, 879, 1005, 1019, 1032, 1063
Mph1103I	ATGCAT	1 cut(s)	796
MroI	TCCGGA	1 cut(s)	347
MroXI	GAANNNNTTC	2 cut(s)	492, 887
MseI	TTAA	4 cut(s)	155, 585, 926, 1065
MslI	CAYNNNNRTG	3 cut(s)	497, 719, 910
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	3 cut(s)	309, 1026, 1089
MunI	CAATTG	1 cut(s)	477
MvaI	CCWGG	3 cut(s)	309, 1026, 1089
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	4 cut(s)	233, 242, 599, 823
NcoI	CCATGG	2 cut(s)	443, 863
NdeI	CATATG	2 cut(s)	796, 907
NdeII	GATC	6 cut(s)	3, 311, 394, 415, 655, 977
NlaIII	CATG	8 cut(s)	224, 307, 447, 551, 720, 821, 833, 867
NmeAIII	GCCGAG	1 cut(s)	101
NmuCI	GTSAC	1 cut(s)	643
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	2 cut(s)	307, 833
OliI	CACNNNNGTG	1 cut(s)	719
PaeI	GCATGC	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	333
PdmI	GAANNNNTTC	2 cut(s)	492, 887
PfeI	GAWTC	2 cut(s)	143, 376
PfoI	TCCNGGA	1 cut(s)	1024
PkrI	GCNGC	3 cut(s)	828, 855, 858
PpuMI	RGGWCCY	1 cut(s)	638
Psp5II	RGGWCCY	1 cut(s)	638
Psp6I	CCWGG	3 cut(s)	307, 1024, 1087
PspGI	CCWGG	3 cut(s)	307, 1024, 1087
PspPI	GGNCC	3 cut(s)	177, 638, 992
PspPPI	RGGWCCY	1 cut(s)	638
PspXI	VCTCGAGB	1 cut(s)	333
PstI	CTGCAG	1 cut(s)	858
PstNI	CAGNNNCTG	1 cut(s)	239
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	3 cut(s)	19, 287, 297
RsaNI	GTAC	3 cut(s)	18, 286, 296
RseI	CAYNNNNRTG	3 cut(s)	497, 719, 910
SaqAI	TTAA	4 cut(s)	155, 585, 926, 1065
SatI	GCNGC	3 cut(s)	827, 854, 857
Sau3AI	GATC	6 cut(s)	3, 311, 394, 415, 655, 977
Sau96I	GGNCC	3 cut(s)	177, 638, 992
ScaI	AGTACT	1 cut(s)	19
ScrFI	CCNGG	3 cut(s)	309, 1026, 1089
SetI	ASST	9 cut(s)	115, 297, 511, 595, 640, 753, 890, 954, 1011
SfaNI	GCATC	3 cut(s)	232, 815, 902
SfcI	CTRYAG	3 cut(s)	250, 801, 854
Sfr274I	CTCGAG	1 cut(s)	333
SinI	GGWCC	2 cut(s)	638, 992
SlaI	CTCGAG	1 cut(s)	333
SmiMI	CAYNNNNRTG	3 cut(s)	497, 719, 910
SmlI	CTYRAG	2 cut(s)	333, 782
SmoI	CTYRAG	2 cut(s)	333, 782
SphI	GCATGC	1 cut(s)	307
SspMI	CTAG	1 cut(s)	1105
StyD4I	CCNGG	3 cut(s)	307, 1024, 1087
StyI	CCWWGG	3 cut(s)	443, 627, 863
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	753
TaqI	TCGA	2 cut(s)	268, 334
TatI	WGTACW	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	143, 376
Tru1I	TTAA	4 cut(s)	155, 585, 926, 1065
Tru9I	TTAA	4 cut(s)	155, 585, 926, 1065
TscAI	CASTG	2 cut(s)	244, 994
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	3 cut(s)	826, 853, 856
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	4 cut(s)	156, 209, 755, 880
TspRI	CASTG	2 cut(s)	244, 994
VpaK11BI	GGWCC	2 cut(s)	638, 992
XapI	RAATTY	3 cut(s)	202, 325, 617
XceI	RCATGY	2 cut(s)	307, 833
XcmI	CCANNNNNNNNNTGG	1 cut(s)	905
XhoI	CTCGAG	1 cut(s)	333
XmnI	GAANNNNTTC	2 cut(s)	492, 887
XspI	CTAG	1 cut(s)	1105
ZrmI	AGTACT	1 cut(s)	19
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.