Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002578

Physical Location & Seq

Genomic Coordinates Forward (+)

34081944 .. 34086275

Gene Structure 4332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1284100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGATTGGGAGGAAGAACATGGGACGAGCTTCACCATTACTTCTCGTTCTTTTGACTCTTGGGTTTTCCTTTGCTACTTATAATTTGTTAACTATGATAATTCATCATAGATCGGTTGGGAAGAGGGTAGGTGATAATACGAATAGTGGGTTACTATCTGACCCGATTGTTGAGATGCCGGAGAATGTGAAGAAGTTCAAGAATACCAAGGCACCATTCCATGTTGCCTTAACAGCCACCGATGCCCCTTATAGCAAATGGCAGTGTCGCATTATGTACTATTGGTATAAGAAGAAGAAGGACTTGCCTGGATCAGATATGGGAGGATTTACTCGAATTTTGCATTCAGGAAATCCTGACAATTTGATGGATGAGATTCCAACTTTGGTGGTTGATCCTCTTCCTGCTGGCCTTGATCGGGGATACATTGTCTTAAATAGACCATGGGCTTTTGTGCAATGGCTGGAAAAGGCTACAATTGAGGAAGAATATATTTTGATGGCGGAGCCCGATCACATTTTTATAAATCCTCTTCCTAATTTGGCACATGGAGGATATCCAGCTGCCTACCCATTTTTCTACATTAAACCTTCTCAGAATGAGAAGATCATAAGAAAGTTTTATCCTGAGGAGAATGGTCCGGTCACGAATATTGATCCAATTGGAAATTCTCCTGTAATTATTAAGAAGGATTTGCTGGAAAAGATTGCTCCTACATGGATGAATGTTTCTTTAAGGATGAAAGAAGACACAGAGACGGATAAAGCTTTTGGATGGGTGCTAGAAATGTATGCTTATGCTGTGGCATCTGCTTTGCATGGTGTGCAGCATGTTCTTCGGAAGGACTTCATGCTGCAGCCCCCATGGGATTTGGAACTTAGTAAAAAGTTTATTATTCATTATACTTACGGATGTGACTACAACTTAAAGGGTGAGCTAACATATGGCAAAATCGGGGAATGGAGATTTGACAAGAGATCGTATCTACGTGGACCTCCACCAAGAAACCTTCCCTTGCCTCCTCCTGGGGTTCCTGAGAGTGTGGTCACCCTTGTAAAGATGGTGAATGAAGCTACGGCTAGCATTCCAAATTGGGACACACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0016740 GO:0016757 GO:0016763 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791 GO:1990585

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

41.93

Weight (kDa)

8.55

Isoelectric Point (pI)

41.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HPAT	PF23452	73 - 366	3.5e-129	Hydroxyproline O-arabinosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25260 AT5G13500 AT5G13500 AT5G13500
fragaria_vesca	FvH4_7g03230
malus_domestica	MD02G1284100.v1.1 MD03G1165800.v1.1 MD07G1050100.v1.1
prunus_persica	Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.4G266100_v2.0.a1 Prupe.4G266100_v2.0.a1
pyrus_communis	pycom02g24210 pycom03g12050 pycom07g03590
rosa_chinensis	RchiOBHm_Chr1g0325271 RchiOBHm_Chr5g0050591
rosa_laevigata	RLG00000030148 RLG00000034710
rosa_multiflora	Rmu_sc0001654.1_g000029 Rmu_sc0001954.1_g000008 Rmu_sc0007742.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030260 Rroxscaffold_4G00324840
rosa_rugosa	Rorug01G0050900 Rorug01G0051000 Rorug01G0051100 Rorug05G0262100
rosa_samantha	Rh1AG066300 Rh1BG054400 Rh1CG067700 Rh1DG072500 Rh5AG334000 Rh5AG334100 Rh5BG343600 Rh5CG371200 Rh5DG356400
rosa_wichuraiana	Rw1G005540 Rw5G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	81, 524
AccB1I	GGYRCC	1 cut(s)	211
AciI	CCGC	1 cut(s)	503
AclWI	GGATC	3 cut(s)	319, 389, 650
AcsI	RAATTY	2 cut(s)	336, 667
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	2 cut(s)	418, 1025
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	2 cut(s)	307, 1024
AjuI	GAANNNNNNNTTGG	4 cut(s)	200, 232, 652, 684
AluBI	AGCT	5 cut(s)	29, 563, 767, 937, 1073
AluI	AGCT	5 cut(s)	29, 563, 767, 937, 1073
Alw26I	GTCTC	1 cut(s)	749
AlwI	GGATC	3 cut(s)	319, 389, 650
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	4 cut(s)	563, 826, 853, 856
ApoI	RAATTY	2 cut(s)	336, 667
Asp700I	GAANNNNTTC	2 cut(s)	194, 845
AspS9I	GGNCC	2 cut(s)	638, 992
AsuHPI	GGTGA	5 cut(s)	24, 143, 944, 1039, 1075
AsuNHI	GCTAGC	1 cut(s)	1079
AvaII	GGWCC	2 cut(s)	638, 992
AxyI	CCTNAGG	1 cut(s)	627
BanI	GGYRCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	510
BbsI	GAAGAC	1 cut(s)	753
BbvI	GCAGC	4 cut(s)	550, 838, 840, 868
BccI	CCATC	4 cut(s)	361, 493, 768, 1054
BceAI	ACGGC	1 cut(s)	1092
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	2 cut(s)	309, 1026
BciVI	GTATCC	1 cut(s)	416
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	2 cut(s)	782, 1080
BfmI	CTRYAG	1 cut(s)	854
BfuI	GTATCC	1 cut(s)	416
BisI	GCNGC	4 cut(s)	564, 827, 854, 857
BlsI	GCNGC	4 cut(s)	565, 828, 855, 858
Bme1390I	CCNGG	2 cut(s)	309, 1026
Bme18I	GGWCC	2 cut(s)	638, 992
BmgT120I	GGNCC	2 cut(s)	638, 992
BmiI	GGNNCC	3 cut(s)	213, 507, 1032
BmrFI	CCNGG	2 cut(s)	309, 1026
BmsI	GCATC	3 cut(s)	165, 232, 815
BmtI	GCTAGC	1 cut(s)	1083
BpiI	GAAGAC	1 cut(s)	753
BsaAI	YACGTR	1 cut(s)	989
BsaJI	CCNNGG	4 cut(s)	207, 443, 863, 1025
BsaWI	WCCGGW	1 cut(s)	640
Bsc4I	CCNNNNNNNGG	2 cut(s)	418, 1025
Bse21I	CCTNAGG	1 cut(s)	627
Bse3DI	GCAATG	1 cut(s)	464
BseBI	CCWGG	2 cut(s)	309, 1026
BseDI	CCNNGG	4 cut(s)	207, 443, 863, 1025
BseGI	GGATG	5 cut(s)	376, 726, 744, 779, 917
BseLI	CCNNNNNNNGG	2 cut(s)	418, 1025
BseMI	GCAATG	1 cut(s)	464
BseMII	CTCAG	3 cut(s)	608, 618, 1026
BseRI	GAGGAG	2 cut(s)	644, 1011
BseXI	GCAGC	4 cut(s)	550, 838, 840, 868
BsgI	GTGCAG	1 cut(s)	845
BshFI	GGCC	1 cut(s)	411
BshNI	GGYRCC	1 cut(s)	211
BsiSI	CCGG	2 cut(s)	179, 641
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	418, 1025
BsmAI	GTCTC	1 cut(s)	749
BsmBI	CGTCTC	1 cut(s)	749
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	2 cut(s)	343, 1083
BsnI	GGCC	1 cut(s)	411
Bsp1286I	GDGCHC	1 cut(s)	510
Bsp143I	GATC	8 cut(s)	110, 311, 394, 415, 511, 606, 655, 977
Bsp19I	CCATGG	2 cut(s)	443, 863
BspACI	CCGC	1 cut(s)	503
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	3 cut(s)	607, 619, 1027
BspLI	GGNNCC	3 cut(s)	213, 507, 1032
BspMAI	CTGCAG	1 cut(s)	858
BspOI	GCTAGC	1 cut(s)	1083
BspPI	GGATC	3 cut(s)	319, 389, 650
BspT107I	GGYRCC	1 cut(s)	211
BsrDI	GCAATG	1 cut(s)	464
BssECI	CCNNGG	4 cut(s)	207, 443, 863, 1025
BssMI	GATC	8 cut(s)	110, 311, 394, 415, 511, 606, 655, 977
BssT1I	CCWWGG	3 cut(s)	207, 443, 863
Bst2UI	CCWGG	2 cut(s)	309, 1026
Bst6I	CTCTTC	3 cut(s)	116, 405, 537
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstBAI	YACGTR	1 cut(s)	989
BstC8I	GCNNGC	2 cut(s)	409, 1081
BstDEI	CTNAG	4 cut(s)	594, 627, 878, 1035
BstDSI	CCRYGG	2 cut(s)	443, 863
BstEII	GGTNACC	1 cut(s)	1045
BstF5I	GGATG	5 cut(s)	376, 726, 744, 779, 917
BstKTI	GATC	8 cut(s)	113, 314, 397, 418, 514, 609, 658, 980
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	8 cut(s)	110, 311, 394, 415, 511, 606, 655, 977
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 242, 823
BstNI	CCWGG	2 cut(s)	309, 1026
BstNSI	RCATGY	1 cut(s)	833
BstPI	GGTNACC	1 cut(s)	1045
BstSCI	CCNGG	2 cut(s)	307, 1024
BstSFI	CTRYAG	1 cut(s)	854
BstV1I	GCAGC	4 cut(s)	550, 838, 840, 868
BstV2I	GAAGAC	1 cut(s)	753
Bsu36I	CCTNAGG	1 cut(s)	627
BsuI	GTATCC	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	411
BtgI	CCRYGG	2 cut(s)	443, 863
BtsCI	GGATG	5 cut(s)	376, 726, 744, 779, 917
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	409, 1081
Cfr13I	GGNCC	2 cut(s)	638, 992
Csp6I	GTAC	1 cut(s)	277
CspCI	CAANNNNNGTGG	2 cut(s)	369, 404
CviAII	CATG	9 cut(s)	19, 221, 444, 548, 717, 818, 830, 850, 864
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	4 cut(s)	594, 627, 878, 1035
DpnI	GATC	8 cut(s)	112, 313, 396, 417, 513, 608, 657, 979
DpnII	GATC	8 cut(s)	110, 311, 394, 415, 511, 606, 655, 977
Eam1104I	CTCTTC	3 cut(s)	116, 405, 537
EarI	CTCTTC	3 cut(s)	116, 405, 537
EciI	GGCGGA	1 cut(s)	518
Eco130I	CCWWGG	3 cut(s)	207, 443, 863
Eco24I	GRGCYC	1 cut(s)	510
Eco32I	GATATC	1 cut(s)	557
Eco47I	GGWCC	2 cut(s)	638, 992
Eco81I	CCTNAGG	1 cut(s)	627
Eco91I	GGTNACC	1 cut(s)	1045
EcoO65I	GGTNACC	1 cut(s)	1045
EcoRII	CCWGG	2 cut(s)	307, 1024
EcoRV	GATATC	1 cut(s)	557
EcoT14I	CCWWGG	3 cut(s)	207, 443, 863
EcoT38I	GRGCYC	1 cut(s)	510
ErhI	CCWWGG	3 cut(s)	207, 443, 863
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	9 cut(s)	22, 224, 447, 551, 720, 821, 833, 853, 867
FalI	AAGNNNNNCTT	2 cut(s)	287, 319
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	9 cut(s)	18, 220, 443, 547, 716, 817, 829, 849, 863
FauNDI	CATATG	1 cut(s)	943
Fnu4HI	GCNGC	4 cut(s)	564, 827, 854, 857
FokI	GGATG	5 cut(s)	383, 733, 751, 786, 924
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	4 cut(s)	564, 827, 854, 857
FspBI	CTAG	2 cut(s)	782, 1080
GluI	GCNGC	4 cut(s)	564, 827, 854, 857
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	2 cut(s)	179, 641
Hin1II	CATG	9 cut(s)	22, 224, 447, 551, 720, 821, 833, 853, 867
HincII	GTYRAC	1 cut(s)	90
HindII	GTYRAC	1 cut(s)	90
HindIII	AAGCTT	1 cut(s)	765
HinfI	GANTC	2 cut(s)	55, 376
HpaI	GTTAAC	1 cut(s)	90
HpaII	CCGG	2 cut(s)	179, 641
HphI	GGTGA	5 cut(s)	24, 143, 944, 1039, 1075
Hpy166II	GTNNAC	2 cut(s)	90, 992
Hpy188I	TCNGA	4 cut(s)	160, 316, 597, 840
Hpy188III	TCNNGA	6 cut(s)	199, 348, 356, 626, 646, 1034
Hpy8I	GTNNAC	2 cut(s)	90, 992
HpyAV	CCTTC	5 cut(s)	292, 600, 682, 835, 1019
HpyCH4IV	ACGT	1 cut(s)	988
HpyCH4V	TGCA	5 cut(s)	343, 457, 817, 826, 856
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 242, 823
HpyF3I	CTNAG	4 cut(s)	594, 627, 878, 1035
HpySE526I	ACGT	1 cut(s)	988
Hsp92II	CATG	9 cut(s)	22, 224, 447, 551, 720, 821, 833, 853, 867
KspAI	GTTAAC	1 cut(s)	90
Kzo9I	GATC	8 cut(s)	110, 311, 394, 415, 511, 606, 655, 977
LmnI	GCTCC	2 cut(s)	505, 715
Lsp1109I	GCAGC	4 cut(s)	550, 838, 840, 868
LweI	GCATC	3 cut(s)	165, 232, 815
MaeI	CTAG	2 cut(s)	782, 1080
MaeII	ACGT	1 cut(s)	988
MaeIII	GTNAC	4 cut(s)	150, 643, 914, 1045
MalI	GATC	8 cut(s)	112, 313, 396, 417, 513, 608, 657, 979
MboI	GATC	8 cut(s)	110, 311, 394, 415, 511, 606, 655, 977
MfeI	CAATTG	2 cut(s)	477, 660
MhlI	GDGCHC	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	404
MroXI	GAANNNNTTC	2 cut(s)	194, 845
MseI	TTAA	7 cut(s)	89, 230, 434, 585, 684, 734, 926
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	2 cut(s)	179, 641
MspR9I	CCNGG	2 cut(s)	309, 1026
MunI	CAATTG	2 cut(s)	477, 660
Mva1269I	GAATGC	2 cut(s)	343, 1083
MvaI	CCWGG	2 cut(s)	309, 1026
MwoI	GCNNNNNNNGC	3 cut(s)	233, 242, 823
NcoI	CCATGG	2 cut(s)	443, 863
NdeI	CATATG	1 cut(s)	943
NdeII	GATC	8 cut(s)	110, 311, 394, 415, 511, 606, 655, 977
NheI	GCTAGC	1 cut(s)	1079
NlaIII	CATG	9 cut(s)	22, 224, 447, 551, 720, 821, 833, 853, 867
NlaIV	GGNNCC	3 cut(s)	213, 507, 1032
NmuCI	GTSAC	3 cut(s)	643, 914, 1045
NspI	RCATGY	1 cut(s)	833
PctI	GAATGC	2 cut(s)	343, 1083
PdmI	GAANNNNTTC	2 cut(s)	194, 845
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	4 cut(s)	565, 828, 855, 858
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Ppu21I	YACGTR	1 cut(s)	989
PsiI	TTATAA	2 cut(s)	81, 524
Psp6I	CCWGG	2 cut(s)	307, 1024
PspEI	GGTNACC	1 cut(s)	1045
PspGI	CCWGG	2 cut(s)	307, 1024
PspN4I	GGNNCC	3 cut(s)	213, 507, 1032
PspPI	GGNCC	2 cut(s)	638, 992
PstI	CTGCAG	1 cut(s)	858
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	7 cut(s)	89, 230, 434, 585, 684, 734, 926
SatI	GCNGC	4 cut(s)	564, 827, 854, 857
Sau3AI	GATC	8 cut(s)	110, 311, 394, 415, 511, 606, 655, 977
Sau96I	GGNCC	2 cut(s)	638, 992
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	2 cut(s)	309, 1026
SduI	GDGCHC	1 cut(s)	510
SfaNI	GCATC	3 cut(s)	165, 232, 815
SfcI	CTRYAG	1 cut(s)	854
SinI	GGWCC	2 cut(s)	638, 992
SsiI	CCGC	1 cut(s)	503
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	2 cut(s)	782, 1080
StyD4I	CCNGG	2 cut(s)	307, 1024
StyI	CCWWGG	3 cut(s)	207, 443, 863
TaiI	ACGT	1 cut(s)	991
TaqI	TCGA	1 cut(s)	334
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	7 cut(s)	89, 230, 434, 585, 684, 734, 926
Tru9I	TTAA	7 cut(s)	89, 230, 434, 585, 684, 734, 926
TscAI	CASTG	1 cut(s)	269
TseFI	GTSAC	3 cut(s)	643, 914, 1045
TseI	GCWGC	4 cut(s)	563, 826, 853, 856
Tsp45I	GTSAC	3 cut(s)	643, 914, 1045
TspDTI	ATGAA	6 cut(s)	92, 737, 755, 838, 887, 1083
TspGWI	ACGGA	2 cut(s)	773, 924
TspRI	CASTG	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	638, 992
XapI	RAATTY	2 cut(s)	336, 667
XceI	RCATGY	1 cut(s)	833
XmnI	GAANNNNTTC	2 cut(s)	194, 845
XspI	CTAG	2 cut(s)	782, 1080

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.