Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0002578

Physical Location & Seq

Genomic Coordinates Forward (+)

11142119 .. 11147385

Gene Structure 5267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG066300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGATTGGGAGGAAGAACATGGGGCGCGCTTCACCATTACTTCTGGTTCTCTTGGCTTTTGGGTTCTTCTTTGCCACTTACAATCTTTTGACGATGATACTCCACTATAGATCTGTTGGGAAGTGGGTAGGTGGTAATACTAACAGTCGTTTACTGGCTGACCCCATTGTCGAGATGCCTGAGAATGTGAAAGTCAAAGGTTCCAAAGCACCATTCCATGTTGCCTTAACAGCAACGGATGCTCCTTATAGTAAATGGCAGTGTCGCATTATGTATTATTGGTATAAGAAGAAGAAGGACATGCCTGGATCAGAAATGGGAGGATTTACTCGAATTTTGCATTCGGGAAGACCTGACAACTTGATGGATGAGATTCCCACTATGGTGGTTGATCCTCTGCCTGCCGGTCTTGATCGGGGATATATTGTCTTAAATAGGCCATGGGCTTTTGTGCAATGGCTGGAAAAGGCTACAATTGAGGAAGAATATGTGTTGATGGCAGAGCCTGATCATATATTTATAAATCCTCTTCCTAATTTGGCCCATGGAGGATATCCTGCTGCCTTCCCCTTTTTCTACATTAAACCTACACAGAATGAGAAGATCATAAGAAAGTTTTACCCCAAAGAGAATGGCCTGGTCACAAATATTGATCCAATTGGAAATTCTCCAGTAATTATCAAGAAGTTGCCATTGTCATTATACAGGGACTTCTCAGTGACTCTTAATGATTTGTATGTAGAATATTTTGTTTGTGGAAATGATGAATTAATAGATATAATCTTTCAGGATATGCTGGAAAAGATTGCTCCGACATGGATGAATATTTCTTTGAGCATGAAAGAAGACACAGAGACTGATAAAGCTTTTGGATGGGTGCTAGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0016740 GO:0016757 GO:0016763 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791 GO:1990585

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

296

Amino Acids

33.9

Weight (kDa)

6.24

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HPAT	PF23452	72 - 231	1.8e-68	Hydroxyproline O-arabinosyltransferase family
HPAT	PF23452	260 - 296	1.2e-09	Hydroxyproline O-arabinosyltransferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25260 AT5G13500 AT5G13500 AT5G13500
fragaria_vesca	FvH4_7g03230
malus_domestica	MD02G1284100.v1.1 MD03G1165800.v1.1 MD07G1050100.v1.1
prunus_persica	Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.4G266100_v2.0.a1 Prupe.4G266100_v2.0.a1
pyrus_communis	pycom02g24210 pycom03g12050 pycom07g03590
rosa_chinensis	RchiOBHm_Chr1g0325271 RchiOBHm_Chr5g0050591
rosa_laevigata	RLG00000030148 RLG00000034710
rosa_multiflora	Rmu_sc0001654.1_g000029 Rmu_sc0001954.1_g000008 Rmu_sc0007742.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030260 Rroxscaffold_4G00324840
rosa_rugosa	Rorug01G0050900 Rorug01G0051000 Rorug01G0051100 Rorug05G0262100
rosa_samantha	Rh1AG066300 Rh1BG054400 Rh1CG067700 Rh1DG072500 Rh5AG334000 Rh5AG334100 Rh5BG343600 Rh5CG371200 Rh5DG356400
rosa_wichuraiana	Rw1G005540 Rw5G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	521
AasI	GACNNNNNNGTC	1 cut(s)	167
AccII	CGCG	1 cut(s)	27
AclWI	GGATC	3 cut(s)	316, 386, 647
AcsI	RAATTY	2 cut(s)	333, 664
AjnI	CCWGG	2 cut(s)	304, 636
AjuI	GAANNNNNNNTTGG	4 cut(s)	197, 229, 649, 681
AleI	CACNNNNGTG	1 cut(s)	383
AluBI	AGCT	1 cut(s)	866
AluI	AGCT	1 cut(s)	866
Alw26I	GTCTC	1 cut(s)	848
AlwI	GGATC	3 cut(s)	316, 386, 647
AlwNI	CAGNNNCTG	2 cut(s)	506, 857
AoxI	GGCC	3 cut(s)	437, 540, 634
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	2 cut(s)	333, 664
AseI	ATTAAT	1 cut(s)	770
AspLEI	GCGC	2 cut(s)	27, 29
AspS9I	GGNCC	1 cut(s)	541
AsuHPI	GGTGA	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	355, 852
BbvI	GCAGC	1 cut(s)	547
BccI	CCATC	3 cut(s)	358, 490, 867
BciT130I	CCWGG	2 cut(s)	306, 638
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	848
BfaI	CTAG	1 cut(s)	881
BfmI	CTRYAG	1 cut(s)	106
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	562
Bme1390I	CCNGG	2 cut(s)	306, 638
BmgT120I	GGNCC	1 cut(s)	541
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	2 cut(s)	306, 638
BmsI	GCATC	2 cut(s)	165, 229
BpiI	GAAGAC	2 cut(s)	355, 852
BpmI	CTGGAG	1 cut(s)	654
BsaJI	CCNNGG	2 cut(s)	440, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	2 cut(s)	159, 671
Bse3DI	GCAATG	1 cut(s)	461
BseBI	CCWGG	2 cut(s)	306, 638
BseDI	CCNNGG	2 cut(s)	440, 544
BseGI	GGATG	4 cut(s)	244, 373, 825, 878
BseMI	GCAATG	1 cut(s)	461
BseMII	CTCAG	2 cut(s)	171, 729
BseNI	ACTGG	2 cut(s)	159, 671
BsePI	GCGCGC	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	547
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	3 cut(s)	439, 542, 636
BsiSI	CCGG	1 cut(s)	405
BslFI	GGGAC	1 cut(s)	722
BsmAI	GTCTC	1 cut(s)	848
BsmFI	GGGAC	1 cut(s)	722
BsmI	GAATGC	1 cut(s)	340
BsnI	GGCC	3 cut(s)	439, 542, 636
Bsp143I	GATC	7 cut(s)	110, 308, 391, 412, 508, 603, 652
Bsp19I	CCATGG	2 cut(s)	440, 544
BspANI	GGCC	3 cut(s)	439, 542, 636
BspCNI	CTCAG	2 cut(s)	172, 728
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	202
BspPI	GGATC	3 cut(s)	316, 386, 647
BsrDI	GCAATG	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	404
BsrI	ACTGG	2 cut(s)	159, 671
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	2 cut(s)	440, 544
BssHII	GCGCGC	1 cut(s)	25
BssMI	GATC	7 cut(s)	110, 308, 391, 412, 508, 603, 652
BssT1I	CCWWGG	2 cut(s)	440, 544
Bst2UI	CCWGG	2 cut(s)	306, 638
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	27, 402
BstDEI	CTNAG	2 cut(s)	180, 715
BstDSI	CCRYGG	2 cut(s)	440, 544
BstF5I	GGATG	4 cut(s)	244, 373, 825, 878
BstFNI	CGCG	1 cut(s)	27
BstHHI	GCGC	2 cut(s)	27, 29
BstKTI	GATC	7 cut(s)	113, 311, 394, 415, 511, 606, 655
BstMAI	GTCTC	1 cut(s)	848
BstMBI	GATC	7 cut(s)	110, 308, 391, 412, 508, 603, 652
BstMWI	GCNNNNNNNGC	2 cut(s)	230, 239
BstNI	CCWGG	2 cut(s)	306, 638
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	2 cut(s)	304, 636
BstSFI	CTRYAG	1 cut(s)	106
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	1 cut(s)	547
BstV2I	GAAGAC	2 cut(s)	355, 852
BstX2I	RGATCY	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	110
BsuRI	GGCC	3 cut(s)	439, 542, 636
BtgI	CCRYGG	2 cut(s)	440, 544
BtsCI	GGATG	4 cut(s)	244, 373, 825, 878
BtsI	GCAGTG	1 cut(s)	266
BtsIMutI	CAGTG	2 cut(s)	266, 723
Cac8I	GCNNGC	2 cut(s)	27, 402
CaiI	CAGNNNCTG	2 cut(s)	506, 857
CfoI	GCGC	2 cut(s)	27, 29
Cfr10I	RCCGGY	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	541
CviAII	CATG	7 cut(s)	19, 218, 301, 441, 545, 816, 838
DdeI	CTNAG	2 cut(s)	180, 715
DpnI	GATC	7 cut(s)	112, 310, 393, 414, 510, 605, 654
DpnII	GATC	7 cut(s)	110, 308, 391, 412, 508, 603, 652
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
Eam1104I	CTCTTC	1 cut(s)	534
EarI	CTCTTC	1 cut(s)	534
Eco130I	CCWWGG	2 cut(s)	440, 544
Eco32I	GATATC	1 cut(s)	554
EcoRII	CCWGG	2 cut(s)	304, 636
EcoRV	GATATC	1 cut(s)	554
EcoT14I	CCWWGG	2 cut(s)	440, 544
ErhI	CCWWGG	2 cut(s)	440, 544
FaeI	CATG	7 cut(s)	22, 221, 304, 444, 548, 819, 841
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	7 cut(s)	18, 217, 300, 440, 544, 815, 837
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	561
FokI	GGATG	4 cut(s)	251, 380, 832, 885
Fsp4HI	GCNGC	1 cut(s)	561
FspBI	CTAG	1 cut(s)	881
GlaI	GCGC	2 cut(s)	26, 28
GluI	GCNGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	654
HaeIII	GGCC	3 cut(s)	439, 542, 636
HapII	CCGG	1 cut(s)	405
HhaI	GCGC	2 cut(s)	27, 29
Hin1II	CATG	7 cut(s)	22, 221, 304, 444, 548, 819, 841
Hin6I	GCGC	2 cut(s)	25, 27
HinP1I	GCGC	2 cut(s)	25, 27
HindIII	AAGCTT	1 cut(s)	864
HinfI	GANTC	2 cut(s)	373, 721
HpaII	CCGG	1 cut(s)	405
HphI	GGTGA	1 cut(s)	24
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	313, 813
Hpy188III	TCNNGA	5 cut(s)	172, 345, 410, 682, 788
Hpy8I	GTNNAC	1 cut(s)	152
HpyAV	CCTTC	2 cut(s)	289, 574
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	2 cut(s)	340, 454
HpyF10VI	GCNNNNNNNGC	2 cut(s)	230, 239
HpyF3I	CTNAG	2 cut(s)	180, 715
Hsp92II	CATG	7 cut(s)	22, 221, 304, 444, 548, 819, 841
HspAI	GCGC	2 cut(s)	25, 27
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	7 cut(s)	110, 308, 391, 412, 508, 603, 652
LmnI	GCTCC	2 cut(s)	247, 814
Lsp1109I	GCAGC	1 cut(s)	547
LweI	GCATC	2 cut(s)	165, 229
MaeI	CTAG	1 cut(s)	881
MaeIII	GTNAC	2 cut(s)	640, 718
MalI	GATC	7 cut(s)	112, 310, 393, 414, 510, 605, 654
MboI	GATC	7 cut(s)	110, 308, 391, 412, 508, 603, 652
MboII	GAAGA	9 cut(s)	25, 58, 301, 304, 360, 494, 521, 613, 857
MfeI	CAATTG	2 cut(s)	474, 657
MflI	RGATCY	1 cut(s)	110
MluCI	AATT	7 cut(s)	333, 474, 535, 657, 664, 675, 767
MlyI	GAGTC	1 cut(s)	715
MmeI	TCCRAC	1 cut(s)	836
MnlI	CCTC	6 cut(s)	3, 314, 405, 472, 537, 542
MseI	TTAA	5 cut(s)	227, 431, 582, 726, 770
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	2 cut(s)	306, 638
MunI	CAATTG	2 cut(s)	474, 657
Mva1269I	GAATGC	1 cut(s)	340
MvaI	CCWGG	2 cut(s)	306, 638
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	230, 239
NcoI	CCATGG	2 cut(s)	440, 544
NdeII	GATC	7 cut(s)	110, 308, 391, 412, 508, 603, 652
NlaIII	CATG	7 cut(s)	22, 221, 304, 444, 548, 819, 841
NlaIV	GGNNCC	1 cut(s)	202
NmuCI	GTSAC	2 cut(s)	640, 718
NspI	RCATGY	1 cut(s)	304
OliI	CACNNNNGTG	1 cut(s)	383
PauI	GCGCGC	1 cut(s)	25
PctI	GAATGC	1 cut(s)	340
PfeI	GAWTC	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	562
PleI	GAGTC	1 cut(s)	715
PpsI	GAGTC	1 cut(s)	715
PshBI	ATTAAT	1 cut(s)	770
PsiI	TTATAA	1 cut(s)	521
Psp6I	CCWGG	2 cut(s)	304, 636
PspGI	CCWGG	2 cut(s)	304, 636
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	541
PstNI	CAGNNNCTG	2 cut(s)	506, 857
PsuI	RGATCY	1 cut(s)	110
PteI	GCGCGC	1 cut(s)	25
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	5 cut(s)	227, 431, 582, 726, 770
SatI	GCNGC	1 cut(s)	561
Sau3AI	GATC	7 cut(s)	110, 308, 391, 412, 508, 603, 652
Sau96I	GGNCC	1 cut(s)	541
SchI	GAGTC	1 cut(s)	715
ScrFI	CCNGG	2 cut(s)	306, 638
SetI	ASST	5 cut(s)	133, 202, 355, 589, 868
SfaNI	GCATC	2 cut(s)	165, 229
SfcI	CTRYAG	1 cut(s)	106
SmiMI	CAYNNNNRTG	1 cut(s)	383
Sse9I	AATT	7 cut(s)	333, 474, 535, 657, 664, 675, 767
SspI	AATATT	3 cut(s)	649, 746, 826
SspMI	CTAG	1 cut(s)	881
StyD4I	CCNGG	2 cut(s)	304, 636
StyI	CCWWGG	2 cut(s)	440, 544
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	2 cut(s)	171, 331
TasI	AATT	7 cut(s)	333, 474, 535, 657, 664, 675, 767
TfiI	GAWTC	1 cut(s)	373
Tru1I	TTAA	5 cut(s)	227, 431, 582, 726, 770
Tru9I	TTAA	5 cut(s)	227, 431, 582, 726, 770
TscAI	CASTG	2 cut(s)	266, 723
TseFI	GTSAC	2 cut(s)	640, 718
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	2 cut(s)	640, 718
TspDTI	ATGAA	3 cut(s)	780, 836, 854
TspGWI	ACGGA	1 cut(s)	251
TspRI	CASTG	2 cut(s)	266, 723
VspI	ATTAAT	1 cut(s)	770
XapI	RAATTY	2 cut(s)	333, 664
XceI	RCATGY	1 cut(s)	304
XspI	CTAG	1 cut(s)	881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.