Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0002578

Physical Location & Seq

Genomic Coordinates Reverse (-)

12398420 .. 12401441

Gene Structure 3022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g12050.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGATTGGGAGAAAAAGCATGGGACGTGCATCGCCAGTACTTTTGGTGCTTTTAGCACTTGGTTTTTTCTTTGCAACGTATAATTTGTTAACCATTATAGTACACAACAAAGCCTCCTACTCGGGCATTTTGGGGGAAGACCGGTTAGAAGATCCCGTGATTCAGAGGCCCTCGAAGGCGGAGAATCCAAAATTTCATGTTGTTGTTACAGCCACTGATGCTCCGTATAGCCAGTGGCAGTGTCGGATCATGTATTACTGGTATAACAAGGTAAAATATATGCCTGGATCAGATATGGGAAAGTTCACTCGAGTTTTGCATTCTGGAAGTGCTGACAATTTGACGGAGGAGATTCCAACAGTTGTGGTTGATCCTCTTCCGGAGGGCTTGGATCGGGGCTATATTGTCCTAAACAGACCATGGGCTTTTGTGCAATGGCTGGAGAAAGCAACAATCGAGGAAGAATACATTCTAATGGCTGAACCTGACCACATATTTGTAAATCCTTTGCCAAACTTAGCACGTGGAAACAATCCAGCAGGGTATCCATTTTTCTACATTAAACCAACCGAAAATGAGAAAATAATTAGGAAGTTTTATCCTGTGGAAAAAGGCCCTGTGACTGATGTTGATCCAATTGGCAATTCTCCTGTAATCATAAAGAAGTCCGTGCTGGAGGAAATCGCTCCCACATGGGTGAATGTGTCTTTGAGAATGAAAGATGACCTAGAGACTGATAAGGCTTTTGGATGGGTGCTTGAGATGTATGCATATGCTGTGGCATCTGCATTGCATGGCGTGCGGCATATTCTTCGTGAAGACTTTATGTTGCAGCCTCCATGGGATTTGAAAGTTGGGAAGAGGTTCATCATCCATTATACTTACGGATGCGACTATAATTTAAAAGGAGACCTGACTTATGGTAAGACTGGAGAATGGCGTTTTGACAAGAGAGCATATCTCAGTGGTCCTCCACCAAGAAACCTCTCTTTGCCCCCTCCAGGAGTTCCTGAAAGCGTGGTAAGGCTCGTGAAAATGGTTAACGAGGCTACTGCAAACATTCCTGGGTGGGACAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

360

Amino Acids

40.8

Weight (kDa)

6.68

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25260 AT5G13500 AT5G13500 AT5G13500
fragaria_vesca	FvH4_7g03230
malus_domestica	MD02G1284100.v1.1 MD03G1165800.v1.1 MD07G1050100.v1.1
prunus_persica	Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.4G266100_v2.0.a1 Prupe.4G266100_v2.0.a1
pyrus_communis	pycom02g24210 pycom03g12050 pycom07g03590
rosa_chinensis	RchiOBHm_Chr1g0325271 RchiOBHm_Chr5g0050591
rosa_laevigata	RLG00000030148 RLG00000034710
rosa_multiflora	Rmu_sc0001654.1_g000029 Rmu_sc0001954.1_g000008 Rmu_sc0007742.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030260 Rroxscaffold_4G00324840
rosa_rugosa	Rorug01G0050900 Rorug01G0051000 Rorug01G0051100 Rorug05G0262100
rosa_samantha	Rh1AG066300 Rh1BG054400 Rh1CG067700 Rh1DG072500 Rh5AG334000 Rh5AG334100 Rh5BG343600 Rh5CG371200 Rh5DG356400
rosa_wichuraiana	Rw1G005540 Rw5G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	379
AciI	CCGC	2 cut(s)	179, 802
AclWI	GGATC	6 cut(s)	146, 254, 295, 365, 399, 626
AcsI	RAATTY	1 cut(s)	191
AcvI	CACGTG	1 cut(s)	524
AfaI	GTAC	2 cut(s)	39, 102
AfiI	CCNNNNNNNGG	1 cut(s)	1001
AgeI	ACCGGT	1 cut(s)	141
AgsI	TTSAA	1 cut(s)	850
AjiI	CACGTC	1 cut(s)	26
AjnI	CCWGG	3 cut(s)	283, 1000, 1063
AjuI	GAANNNNNNNTTGG	2 cut(s)	628, 660
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	1 cut(s)	1077
AluI	AGCT	1 cut(s)	1077
Alw26I	GTCTC	2 cut(s)	725, 903
AlwI	GGATC	6 cut(s)	146, 254, 295, 365, 399, 626
AlwNI	CAGNNNCTG	1 cut(s)	215
Ama87I	CYCGRG	2 cut(s)	121, 309
Aor13HI	TCCGGA	1 cut(s)	379
AoxI	GGCC	2 cut(s)	167, 613
ApeKI	GCWGC	1 cut(s)	832
ApoI	RAATTY	1 cut(s)	191
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AsiGI	ACCGGT	1 cut(s)	141
Asp700I	GAANNNNTTC	2 cut(s)	468, 863
AspS9I	GGNCC	3 cut(s)	168, 614, 968
AsuHPI	GGTGA	1 cut(s)	709
AvaI	CYCGRG	2 cut(s)	121, 309
AvaII	GGWCC	1 cut(s)	968
BauI	CACGAG	1 cut(s)	1028
BbrPI	CACGTG	1 cut(s)	524
BbsI	GAAGAC	2 cut(s)	144, 825
BbvI	GCAGC	1 cut(s)	844
BccI	CCATC	1 cut(s)	744
BcgI	CGANNNNNNTGC	4 cut(s)	794, 828, 1034, 1068
BciT130I	CCWGG	3 cut(s)	285, 1002, 1065
BciVI	GTATCC	1 cut(s)	555
BcoDI	GTCTC	2 cut(s)	725, 903
BfaI	CTAG	1 cut(s)	728
BfuI	GTATCC	1 cut(s)	555
BisI	GCNGC	2 cut(s)	803, 833
BlsI	GCNGC	2 cut(s)	804, 834
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	3 cut(s)	285, 1002, 1065
Bme18I	GGWCC	1 cut(s)	968
BmeT110I	CYCGRG	2 cut(s)	121, 309
BmgBI	CACGTC	1 cut(s)	26
BmgT120I	GGNCC	3 cut(s)	168, 614, 968
BmrFI	CCNGG	3 cut(s)	285, 1002, 1065
BmsI	GCATC	4 cut(s)	38, 208, 791, 878
BpiI	GAAGAC	2 cut(s)	144, 825
BplI	GAGNNNNNCTC	2 cut(s)	945, 977
BpmI	CTGGAG	4 cut(s)	461, 695, 951, 984
BpuEI	CTTGAG	1 cut(s)	779
BsaAI	YACGTR	1 cut(s)	524
BsaBI	GATNNNNATC	1 cut(s)	630
BsaI	GGTCTC	1 cut(s)	903
BsaJI	CCNNGG	3 cut(s)	419, 839, 1064
BsaWI	WCCGGW	2 cut(s)	141, 379
BsaXI	ACNNNNNCTCC	4 cut(s)	98, 128, 205, 235
Bsc4I	CCNNNNNNNGG	1 cut(s)	1001
Bse118I	RCCGGY	1 cut(s)	141
Bse1I	ACTGG	4 cut(s)	35, 232, 263, 934
Bse3DI	GCAATG	2 cut(s)	440, 788
Bse8I	GATNNNNATC	1 cut(s)	630
BseAI	TCCGGA	1 cut(s)	379
BseBI	CCWGG	3 cut(s)	285, 1002, 1065
BseDI	CCNNGG	3 cut(s)	419, 839, 1064
BseGI	GGATG	3 cut(s)	755, 870, 893
BseJI	GATNNNNATC	1 cut(s)	630
BseLI	CCNNNNNNNGG	1 cut(s)	1001
BseMI	GCAATG	2 cut(s)	440, 788
BseMII	CTCAG	1 cut(s)	976
BseNI	ACTGG	4 cut(s)	35, 232, 263, 934
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	1 cut(s)	844
BshFI	GGCC	2 cut(s)	169, 615
BshTI	ACCGGT	1 cut(s)	141
BsiHKCI	CYCGRG	2 cut(s)	121, 309
BsiSI	CCGG	2 cut(s)	142, 380
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	1001
BsmAI	GTCTC	2 cut(s)	725, 903
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	169, 615
Bso31I	GGTCTC	1 cut(s)	903
BsoBI	CYCGRG	2 cut(s)	121, 309
Bsp13I	TCCGGA	1 cut(s)	379
Bsp143I	GATC	6 cut(s)	151, 246, 287, 370, 391, 631
Bsp19I	CCATGG	2 cut(s)	419, 839
BspACI	CCGC	2 cut(s)	179, 802
BspANI	GGCC	2 cut(s)	169, 615
BspCNI	CTCAG	1 cut(s)	975
BspEI	TCCGGA	1 cut(s)	379
BspPI	GGATC	6 cut(s)	146, 254, 295, 365, 399, 626
BspTNI	GGTCTC	1 cut(s)	903
BsrDI	GCAATG	2 cut(s)	440, 788
BsrFI	RCCGGY	1 cut(s)	141
BsrI	ACTGG	4 cut(s)	35, 232, 263, 934
BssAI	RCCGGY	1 cut(s)	141
BssECI	CCNNGG	3 cut(s)	419, 839, 1064
BssMI	GATC	6 cut(s)	151, 246, 287, 370, 391, 631
BssSI	CACGAG	1 cut(s)	1028
BssT1I	CCWWGG	2 cut(s)	419, 839
Bst2BI	CACGAG	1 cut(s)	1028
Bst2UI	CCWGG	3 cut(s)	285, 1002, 1065
Bst4CI	ACNGT	1 cut(s)	361
Bst6I	CTCTTC	2 cut(s)	381, 854
BstAPI	GCANNNNNTGC	1 cut(s)	799
BstBAI	YACGTR	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	800
BstDEI	CTNAG	2 cut(s)	517, 962
BstDSI	CCRYGG	2 cut(s)	419, 839
BstF5I	GGATG	3 cut(s)	755, 870, 893
BstKTI	GATC	6 cut(s)	154, 249, 290, 373, 394, 634
BstMAI	GTCTC	2 cut(s)	725, 903
BstMBI	GATC	6 cut(s)	151, 246, 287, 370, 391, 631
BstMWI	GCNNNNNNNGC	2 cut(s)	218, 799
BstNI	CCWGG	3 cut(s)	285, 1002, 1065
BstSCI	CCNGG	3 cut(s)	283, 1000, 1063
BstV1I	GCAGC	1 cut(s)	844
BstV2I	GAAGAC	2 cut(s)	144, 825
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	555
BsuRI	GGCC	2 cut(s)	169, 615
BtgI	CCRYGG	2 cut(s)	419, 839
BtgZI	GCGATG	1 cut(s)	15
BtrI	CACGTC	1 cut(s)	26
BtsCI	GGATG	3 cut(s)	755, 870, 893
BtsI	GCAGTG	1 cut(s)	245
BtsIMutI	CAGTG	4 cut(s)	213, 239, 245, 970
Cac8I	GCNNGC	1 cut(s)	800
CaiI	CAGNNNCTG	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	141
Cfr13I	GGNCC	3 cut(s)	168, 614, 968
Csp6I	GTAC	2 cut(s)	38, 101
CspAI	ACCGGT	1 cut(s)	141
CspCI	CAANNNNNGTGG	2 cut(s)	345, 380
CviAII	CATG	7 cut(s)	19, 197, 250, 420, 693, 794, 840
CviQI	GTAC	2 cut(s)	38, 101
DdeI	CTNAG	2 cut(s)	517, 962
DpnI	GATC	6 cut(s)	153, 248, 289, 372, 393, 633
DpnII	GATC	6 cut(s)	151, 246, 287, 370, 391, 631
DraI	TTTAAA	1 cut(s)	903
Eam1104I	CTCTTC	2 cut(s)	381, 854
EarI	CTCTTC	2 cut(s)	381, 854
EciI	GGCGGA	1 cut(s)	194
Eco130I	CCWWGG	2 cut(s)	419, 839
Eco31I	GGTCTC	1 cut(s)	903
Eco47I	GGWCC	1 cut(s)	968
Eco72I	CACGTG	1 cut(s)	524
Eco88I	CYCGRG	2 cut(s)	121, 309
EcoO109I	RGGNCCY	2 cut(s)	168, 614
EcoRII	CCWGG	3 cut(s)	283, 1000, 1063
EcoT14I	CCWWGG	2 cut(s)	419, 839
EcoT22I	ATGCAT	1 cut(s)	772
ErhI	CCWWGG	2 cut(s)	419, 839
FaeI	CATG	7 cut(s)	22, 200, 253, 423, 696, 797, 843
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	7 cut(s)	18, 196, 249, 419, 692, 793, 839
FauNDI	CATATG	1 cut(s)	772
Fnu4HI	GCNGC	2 cut(s)	803, 833
FokI	GGATG	3 cut(s)	762, 857, 900
Fsp4HI	GCNGC	2 cut(s)	803, 833
FspBI	CTAG	1 cut(s)	728
GluI	GCNGC	2 cut(s)	803, 833
GsuI	CTGGAG	4 cut(s)	461, 695, 951, 984
HaeIII	GGCC	2 cut(s)	169, 615
HapII	CCGG	2 cut(s)	142, 380
Hin1II	CATG	7 cut(s)	22, 200, 253, 423, 696, 797, 843
HincII	GTYRAC	2 cut(s)	90, 1042
HindII	GTYRAC	2 cut(s)	90, 1042
HinfI	GANTC	3 cut(s)	160, 184, 352
HpaI	GTTAAC	2 cut(s)	90, 1042
HpaII	CCGG	2 cut(s)	142, 380
HphI	GGTGA	1 cut(s)	709
Hpy166II	GTNNAC	4 cut(s)	90, 103, 306, 1042
Hpy188I	TCNGA	3 cut(s)	165, 246, 292
Hpy188III	TCNNGA	5 cut(s)	324, 380, 815, 1010, 1030
Hpy8I	GTNNAC	4 cut(s)	90, 103, 306, 1042
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	361
HpyCH4IV	ACGT	3 cut(s)	25, 77, 523
HpyCH4V	TGCA	9 cut(s)	29, 74, 319, 433, 770, 788, 793, 832, 1055
HpyF10VI	GCNNNNNNNGC	2 cut(s)	218, 799
HpyF3I	CTNAG	2 cut(s)	517, 962
HpySE526I	ACGT	3 cut(s)	25, 77, 523
Hsp92II	CATG	7 cut(s)	22, 200, 253, 423, 696, 797, 843
Kpn2I	TCCGGA	1 cut(s)	379
KspAI	GTTAAC	2 cut(s)	90, 1042
Kzo9I	GATC	6 cut(s)	151, 246, 287, 370, 391, 631
LmnI	GCTCC	2 cut(s)	226, 691
Lsp1109I	GCAGC	1 cut(s)	844
LweI	GCATC	4 cut(s)	38, 208, 791, 878
MaeI	CTAG	1 cut(s)	728
MaeII	ACGT	3 cut(s)	25, 77, 523
MaeIII	GTNAC	2 cut(s)	205, 619
MalI	GATC	6 cut(s)	153, 248, 289, 372, 393, 633
MboI	GATC	6 cut(s)	151, 246, 287, 370, 391, 631
MboII	GAAGA	7 cut(s)	149, 161, 368, 473, 803, 830, 871
MfeI	CAATTG	1 cut(s)	636
MflI	RGATCY	1 cut(s)	151
MluCI	AATT	7 cut(s)	82, 191, 337, 585, 636, 643, 898
MmeI	TCCRAC	2 cut(s)	224, 380
Mph1103I	ATGCAT	1 cut(s)	772
MroI	TCCGGA	1 cut(s)	379
MroXI	GAANNNNTTC	2 cut(s)	468, 863
MseI	TTAA	4 cut(s)	89, 561, 902, 1041
MslI	CAYNNNNRTG	2 cut(s)	473, 695
MspI	CCGG	2 cut(s)	142, 380
MspR9I	CCNGG	3 cut(s)	285, 1002, 1065
MunI	CAATTG	1 cut(s)	636
Mva1269I	GAATGC	1 cut(s)	319
MvaI	CCWGG	3 cut(s)	285, 1002, 1065
MwoI	GCNNNNNNNGC	2 cut(s)	218, 799
NcoI	CCATGG	2 cut(s)	419, 839
NdeI	CATATG	1 cut(s)	772
NdeII	GATC	6 cut(s)	151, 246, 287, 370, 391, 631
NlaIII	CATG	7 cut(s)	22, 200, 253, 423, 696, 797, 843
NmuCI	GTSAC	1 cut(s)	619
NsiI	ATGCAT	1 cut(s)	772
OliI	CACNNNNGTG	1 cut(s)	695
PaeR7I	CTCGAG	1 cut(s)	309
PctI	GAATGC	1 cut(s)	319
PdmI	GAANNNNTTC	2 cut(s)	468, 863
PfeI	GAWTC	3 cut(s)	160, 184, 352
PfoI	TCCNGGA	1 cut(s)	1000
PinAI	ACCGGT	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	804, 834
PmaCI	CACGTG	1 cut(s)	524
PmlI	CACGTG	1 cut(s)	524
Ppu21I	YACGTR	1 cut(s)	524
Psp6I	CCWGG	3 cut(s)	283, 1000, 1063
PspCI	CACGTG	1 cut(s)	524
PspGI	CCWGG	3 cut(s)	283, 1000, 1063
PspPI	GGNCC	3 cut(s)	168, 614, 968
PspXI	VCTCGAGB	1 cut(s)	309
PstNI	CAGNNNCTG	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	2 cut(s)	39, 102
RsaNI	GTAC	2 cut(s)	38, 101
RseI	CAYNNNNRTG	2 cut(s)	473, 695
SaqAI	TTAA	4 cut(s)	89, 561, 902, 1041
SatI	GCNGC	2 cut(s)	803, 833
Sau3AI	GATC	6 cut(s)	151, 246, 287, 370, 391, 631
Sau96I	GGNCC	3 cut(s)	168, 614, 968
ScaI	AGTACT	1 cut(s)	39
ScrFI	CCNGG	3 cut(s)	285, 1002, 1065
SfaNI	GCATC	4 cut(s)	38, 208, 791, 878
Sfr274I	CTCGAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	968
SlaI	CTCGAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	2 cut(s)	473, 695
SmlI	CTYRAG	2 cut(s)	309, 758
SmoI	CTYRAG	2 cut(s)	309, 758
Sse9I	AATT	7 cut(s)	82, 191, 337, 585, 636, 643, 898
SsiI	CCGC	2 cut(s)	179, 802
SspMI	CTAG	1 cut(s)	728
StyD4I	CCNGG	3 cut(s)	283, 1000, 1063
StyI	CCWWGG	2 cut(s)	419, 839
TaaI	ACNGT	1 cut(s)	361
TaiI	ACGT	3 cut(s)	28, 80, 526
TaqI	TCGA	3 cut(s)	173, 310, 456
TasI	AATT	7 cut(s)	82, 191, 337, 585, 636, 643, 898
TatI	WGTACW	2 cut(s)	37, 100
TauI	GCSGC	1 cut(s)	805
TfiI	GAWTC	3 cut(s)	160, 184, 352
Tru1I	TTAA	4 cut(s)	89, 561, 902, 1041
Tru9I	TTAA	4 cut(s)	89, 561, 902, 1041
TscAI	CASTG	4 cut(s)	220, 239, 245, 970
TseFI	GTSAC	1 cut(s)	619
TseI	GCWGC	1 cut(s)	832
Tsp45I	GTSAC	1 cut(s)	619
TspDTI	ATGAA	3 cut(s)	185, 731, 856
TspGWI	ACGGA	4 cut(s)	213, 359, 658, 900
TspRI	CASTG	4 cut(s)	220, 239, 245, 970
VpaK11BI	GGWCC	1 cut(s)	968
XapI	RAATTY	1 cut(s)	191
XhoI	CTCGAG	1 cut(s)	309
XmnI	GAANNNNTTC	2 cut(s)	468, 863
XspI	CTAG	1 cut(s)	728
ZrmI	AGTACT	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.