Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002578

Physical Location & Seq

Genomic Coordinates Forward (+)

4140831 .. 4146789

Gene Structure 5959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G038500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGATTGGGAGGAAGAACATGGGACGAGCTTCACCATTACTTCTGGTTCTTTTGGTTCTTGGGTTTTTCTTTGCCACTTATAATTTTTTAACTATAATAATCCCCTATAGATCTGTTGGGAAGTGGGTAGGTGATAATTCGAATGGTGGGTTACTGTCTGACCCCATTATTGGGATGCCTGAGAATGTGAAGAAATTCAAGAATTCCAAGTCACCATTCCATGTTGCCTTAACAGCCACTGATGCTCCTTACAGCAAATGGCAGTGTCGCATTATGTACTATTGGTATAAGAAGAATAAGGACTTGCCTGGATCGGAGATGGGAGGTTTTACCCGAATTTTGCATTCAGGAAATCCTGACAACTTGATGGATGAGATCCCAACTATGGTCGTTGATCCTCTTCCTGCAGGTCTTGATCGGGGATATATTGTCTTAAACAGACCATGGGCTTTTGTTCAATGGCTGGAAAAAGCTACAATTGAGGAAGAATATATTTTGATGGCAGAGCCTGATCACATTTTTATAAATCCTCTTCCTAATTTGGCTCATGGAGGATATCCAGCTGGCTTCCCATTTTTCTATATTAAACCTTTGCAGAATGAGAAGATCGTAAGAAAGTTTTATCCTGAGGAGAATGGCCCAGTCACAAATGTTGATCCAATTGGCAATTCTCCTGTAATTATCAGAAAGGATTTACTGGAAAAGATTGCTCCAACATGGATGAATGTTTCTTTGAGAATGAAAGAAGACGCAGAGACGGATAAAGCTTTCGGATGGGTGCTAGAAATGTATGCATATGCTGTAGCATCTGCTTTGCATGGAGTGCAGCATGTTCTTCGGAAGGACTTCATGCTGCAGCCCCCATGGGATTTGGAAATCGGTAAAAAGTTTATTATTCATTATACTTACGGGTGTGACTACAACTTAAAGGGTGAGCTAACTTACGGCAAAATCGGGGAGTGGAGATTCGACAAGAGATCATATCTACGTGGACCTCCACCGAGAAACCTTCCCTTACCCCCTCCCGGGGTTCCTAAGAGTGTGGTCACCCTTGTAAAGATGGTGAATGAAGCTACTGCTAACATACCTAATTGGGACACACAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0016740 GO:0016757 GO:0016763 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791 GO:1990585

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

41.9

Weight (kDa)

8.74

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25260 AT5G13500 AT5G13500 AT5G13500
fragaria_vesca	FvH4_7g03230
malus_domestica	MD02G1284100.v1.1 MD03G1165800.v1.1 MD07G1050100.v1.1
prunus_persica	Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.4G266100_v2.0.a1 Prupe.4G266100_v2.0.a1
pyrus_communis	pycom02g24210 pycom03g12050 pycom07g03590
rosa_chinensis	RchiOBHm_Chr1g0325271 RchiOBHm_Chr5g0050591
rosa_laevigata	RLG00000030148 RLG00000034710
rosa_multiflora	Rmu_sc0001654.1_g000029 Rmu_sc0001954.1_g000008 Rmu_sc0007742.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030260 Rroxscaffold_4G00324840
rosa_rugosa	Rorug01G0050900 Rorug01G0051000 Rorug01G0051100 Rorug05G0262100
rosa_samantha	Rh1AG066300 Rh1BG054400 Rh1CG067700 Rh1DG072500 Rh5AG334000 Rh5AG334100 Rh5BG343600 Rh5CG371200 Rh5DG356400
rosa_wichuraiana	Rw1G005540 Rw5G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	81, 524
Acc36I	ACCTGC	1 cut(s)	398
AclWI	GGATC	4 cut(s)	319, 370, 389, 650
AcsI	RAATTY	3 cut(s)	194, 202, 336
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	6 cut(s)	170, 171, 385, 1025, 1026, 1027
AgsI	TTSAA	2 cut(s)	199, 458
AjnI	CCWGG	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	4 cut(s)	200, 232, 652, 684
AluBI	AGCT	6 cut(s)	29, 473, 563, 767, 937, 1073
AluI	AGCT	6 cut(s)	29, 473, 563, 767, 937, 1073
Alw26I	GTCTC	1 cut(s)	749
AlwI	GGATC	4 cut(s)	319, 370, 389, 650
AlwNI	CAGNNNCTG	2 cut(s)	239, 509
Ama87I	CYCGRG	1 cut(s)	1025
AoxI	GGCC	1 cut(s)	637
ApeKI	GCWGC	3 cut(s)	826, 853, 856
ApoI	RAATTY	3 cut(s)	194, 202, 336
Asp700I	GAANNNNTTC	2 cut(s)	194, 845
AspS9I	GGNCC	2 cut(s)	638, 992
AsuC2I	CCSGG	2 cut(s)	1026, 1027
AsuHPI	GGTGA	6 cut(s)	24, 143, 204, 944, 1039, 1075
AsuII	TTCGAA	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	1025
AvaII	GGWCC	1 cut(s)	992
AxyI	CCTNAGG	1 cut(s)	627
BbsI	GAAGAC	1 cut(s)	753
BbvI	GCAGC	3 cut(s)	838, 840, 868
BccI	CCATC	5 cut(s)	313, 361, 493, 768, 1054
BceAI	ACGGC	1 cut(s)	961
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	1 cut(s)	309
BclI	TGATCA	1 cut(s)	511
BcnI	CCSGG	2 cut(s)	1026, 1027
BcoDI	GTCTC	1 cut(s)	749
BfaI	CTAG	1 cut(s)	782
BfmI	CTRYAG	4 cut(s)	106, 405, 801, 854
BfuAI	ACCTGC	1 cut(s)	398
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	3 cut(s)	827, 854, 857
BlsI	GCNGC	3 cut(s)	828, 855, 858
Bme1390I	CCNGG	3 cut(s)	309, 1026, 1027
Bme18I	GGWCC	1 cut(s)	992
BmeT110I	CYCGRG	1 cut(s)	1025
BmgT120I	GGNCC	2 cut(s)	638, 992
BmiI	GGNNCC	1 cut(s)	1032
BmrFI	CCNGG	3 cut(s)	309, 1026, 1027
BmrI	ACTGGG	1 cut(s)	635
BmsI	GCATC	3 cut(s)	165, 232, 815
BmuI	ACTGGG	1 cut(s)	635
BpiI	GAAGAC	1 cut(s)	753
Bpu14I	TTCGAA	1 cut(s)	140
BpuMI	CCSGG	2 cut(s)	1026, 1027
BsaAI	YACGTR	1 cut(s)	989
BsaJI	CCNNGG	4 cut(s)	443, 863, 1025, 1026
BsaXI	ACNNNNNCTCC	2 cut(s)	229, 259
Bsc4I	CCNNNNNNNGG	6 cut(s)	170, 171, 385, 1025, 1026, 1027
Bse1I	ACTGG	2 cut(s)	641, 702
Bse21I	CCTNAGG	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	309
BseDI	CCNNGG	4 cut(s)	443, 863, 1025, 1026
BseGI	GGATG	4 cut(s)	180, 376, 726, 779
BseLI	CCNNNNNNNGG	6 cut(s)	170, 171, 385, 1025, 1026, 1027
BseMII	CTCAG	2 cut(s)	171, 618
BseNI	ACTGG	2 cut(s)	641, 702
BseRI	GAGGAG	1 cut(s)	644
BseXI	GCAGC	3 cut(s)	838, 840, 868
BsgI	GTGCAG	1 cut(s)	845
BshFI	GGCC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	1025
BsiSI	CCGG	1 cut(s)	1026
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	6 cut(s)	170, 171, 385, 1025, 1026, 1027
BsmAI	GTCTC	1 cut(s)	749
BsmBI	CGTCTC	1 cut(s)	749
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	1 cut(s)	639
BsoBI	CYCGRG	1 cut(s)	1025
Bsp119I	TTCGAA	1 cut(s)	140
Bsp143I	GATC	9 cut(s)	110, 311, 375, 394, 415, 511, 606, 655, 977
Bsp19I	CCATGG	2 cut(s)	443, 863
BspANI	GGCC	1 cut(s)	639
BspCNI	CTCAG	2 cut(s)	172, 619
BspLI	GGNNCC	1 cut(s)	1032
BspMAI	CTGCAG	2 cut(s)	409, 858
BspMI	ACCTGC	1 cut(s)	398
BspPI	GGATC	4 cut(s)	319, 370, 389, 650
BspT104I	TTCGAA	1 cut(s)	140
BsrI	ACTGG	2 cut(s)	641, 702
BssECI	CCNNGG	4 cut(s)	443, 863, 1025, 1026
BssMI	GATC	9 cut(s)	110, 311, 375, 394, 415, 511, 606, 655, 977
BssT1I	CCWWGG	2 cut(s)	443, 863
Bst2UI	CCWGG	1 cut(s)	309
Bst4CI	ACNGT	1 cut(s)	156
Bst6I	CTCTTC	2 cut(s)	405, 537
BstAPI	GCANNNNNTGC	1 cut(s)	823
BstBAI	YACGTR	1 cut(s)	989
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	565
BstDEI	CTNAG	3 cut(s)	180, 627, 1035
BstDSI	CCRYGG	2 cut(s)	443, 863
BstEII	GGTNACC	1 cut(s)	1045
BstF5I	GGATG	4 cut(s)	180, 376, 726, 779
BstKTI	GATC	9 cut(s)	113, 314, 378, 397, 418, 514, 609, 658, 980
BstMAI	GTCTC	1 cut(s)	749
BstMBI	GATC	9 cut(s)	110, 311, 375, 394, 415, 511, 606, 655, 977
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 242, 823
BstNI	CCWGG	1 cut(s)	309
BstNSI	RCATGY	1 cut(s)	833
BstPI	GGTNACC	1 cut(s)	1045
BstSCI	CCNGG	3 cut(s)	307, 1024, 1025
BstSFI	CTRYAG	4 cut(s)	106, 405, 801, 854
BstV1I	GCAGC	3 cut(s)	838, 840, 868
BstV2I	GAAGAC	1 cut(s)	753
BstX2I	RGATCY	2 cut(s)	110, 375
BstYI	RGATCY	2 cut(s)	110, 375
Bsu36I	CCTNAGG	1 cut(s)	627
BsuRI	GGCC	1 cut(s)	639
BtgI	CCRYGG	2 cut(s)	443, 863
BtsCI	GGATG	4 cut(s)	180, 376, 726, 779
BtsI	GCAGTG	1 cut(s)	269
BtsIMutI	CAGTG	2 cut(s)	237, 269
BveI	ACCTGC	1 cut(s)	398
Cac8I	GCNNGC	1 cut(s)	565
CaiI	CAGNNNCTG	2 cut(s)	239, 509
Cfr13I	GGNCC	2 cut(s)	638, 992
Cfr9I	CCCGGG	1 cut(s)	1025
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	9 cut(s)	19, 221, 444, 548, 717, 818, 830, 850, 864
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	3 cut(s)	180, 627, 1035
DpnI	GATC	9 cut(s)	112, 313, 377, 396, 417, 513, 608, 657, 979
DpnII	GATC	9 cut(s)	110, 311, 375, 394, 415, 511, 606, 655, 977
Eam1104I	CTCTTC	2 cut(s)	405, 537
EarI	CTCTTC	2 cut(s)	405, 537
Eco130I	CCWWGG	2 cut(s)	443, 863
Eco32I	GATATC	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	992
Eco81I	CCTNAGG	1 cut(s)	627
Eco88I	CYCGRG	1 cut(s)	1025
Eco91I	GGTNACC	1 cut(s)	1045
EcoO65I	GGTNACC	1 cut(s)	1045
EcoRI	GAATTC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	307
EcoRV	GATATC	1 cut(s)	557
EcoT14I	CCWWGG	2 cut(s)	443, 863
EcoT22I	ATGCAT	1 cut(s)	796
ErhI	CCWWGG	2 cut(s)	443, 863
Esp3I	CGTCTC	1 cut(s)	749
FaeI	CATG	9 cut(s)	22, 224, 447, 551, 720, 821, 833, 853, 867
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	9 cut(s)	18, 220, 443, 547, 716, 817, 829, 849, 863
FauNDI	CATATG	1 cut(s)	796
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	827, 854, 857
FokI	GGATG	4 cut(s)	187, 383, 733, 786
Fsp4HI	GCNGC	3 cut(s)	827, 854, 857
FspBI	CTAG	1 cut(s)	782
GluI	GCNGC	3 cut(s)	827, 854, 857
HaeIII	GGCC	1 cut(s)	639
HapII	CCGG	1 cut(s)	1026
HgaI	GACGC	1 cut(s)	758
Hin1II	CATG	9 cut(s)	22, 224, 447, 551, 720, 821, 833, 853, 867
HindIII	AAGCTT	1 cut(s)	765
HinfI	GANTC	1 cut(s)	966
HpaII	CCGG	1 cut(s)	1026
HphI	GGTGA	6 cut(s)	24, 143, 204, 944, 1039, 1075
Hpy166II	GTNNAC	1 cut(s)	992
Hpy188I	TCNGA	5 cut(s)	160, 316, 686, 773, 840
Hpy188III	TCNNGA	5 cut(s)	199, 348, 356, 413, 626
Hpy8I	GTNNAC	1 cut(s)	992
HpyAV	CCTTC	2 cut(s)	835, 1019
HpyCH4III	ACNGT	1 cut(s)	156
HpyCH4IV	ACGT	1 cut(s)	988
HpyCH4V	TGCA	7 cut(s)	343, 407, 595, 794, 817, 826, 856
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 242, 823
HpyF3I	CTNAG	3 cut(s)	180, 627, 1035
HpySE526I	ACGT	1 cut(s)	988
Hsp92II	CATG	9 cut(s)	22, 224, 447, 551, 720, 821, 833, 853, 867
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	9 cut(s)	110, 311, 375, 394, 415, 511, 606, 655, 977
LmnI	GCTCC	2 cut(s)	250, 715
Lsp1109I	GCAGC	3 cut(s)	838, 840, 868
LweI	GCATC	3 cut(s)	165, 232, 815
MaeI	CTAG	1 cut(s)	782
MaeII	ACGT	1 cut(s)	988
MaeIII	GTNAC	5 cut(s)	150, 210, 643, 914, 1045
MalI	GATC	9 cut(s)	112, 313, 377, 396, 417, 513, 608, 657, 979
MboI	GATC	9 cut(s)	110, 311, 375, 394, 415, 511, 606, 655, 977
MboII	GAAGA	9 cut(s)	25, 202, 304, 392, 497, 524, 616, 758, 827
MfeI	CAATTG	2 cut(s)	477, 660
MflI	RGATCY	2 cut(s)	110, 375
MmeI	TCCRAC	1 cut(s)	737
MnlI	CCTC	9 cut(s)	3, 317, 408, 475, 540, 545, 622, 1005, 1032
Mph1103I	ATGCAT	1 cut(s)	796
MroXI	GAANNNNTTC	2 cut(s)	194, 845
MseI	TTAA	5 cut(s)	89, 230, 434, 585, 926
MspA1I	CMGCKG	1 cut(s)	563
MspI	CCGG	1 cut(s)	1026
MspR9I	CCNGG	3 cut(s)	309, 1026, 1027
MunI	CAATTG	2 cut(s)	477, 660
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	1 cut(s)	309
MwoI	GCNNNNNNNGC	3 cut(s)	233, 242, 823
NciI	CCSGG	2 cut(s)	1026, 1027
NcoI	CCATGG	2 cut(s)	443, 863
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	9 cut(s)	110, 311, 375, 394, 415, 511, 606, 655, 977
NlaIII	CATG	9 cut(s)	22, 224, 447, 551, 720, 821, 833, 853, 867
NlaIV	GGNNCC	1 cut(s)	1032
NmuCI	GTSAC	4 cut(s)	210, 643, 914, 1045
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	1 cut(s)	833
NspV	TTCGAA	1 cut(s)	140
PctI	GAATGC	1 cut(s)	343
PdmI	GAANNNNTTC	2 cut(s)	194, 845
PfeI	GAWTC	1 cut(s)	966
PkrI	GCNGC	3 cut(s)	828, 855, 858
Ppu21I	YACGTR	1 cut(s)	989
PsiI	TTATAA	2 cut(s)	81, 524
Psp6I	CCWGG	1 cut(s)	307
PspEI	GGTNACC	1 cut(s)	1045
PspGI	CCWGG	1 cut(s)	307
PspN4I	GGNNCC	1 cut(s)	1032
PspPI	GGNCC	2 cut(s)	638, 992
PstI	CTGCAG	2 cut(s)	409, 858
PstNI	CAGNNNCTG	2 cut(s)	239, 509
PsuI	RGATCY	2 cut(s)	110, 375
PvuII	CAGCTG	1 cut(s)	563
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	5 cut(s)	89, 230, 434, 585, 926
SatI	GCNGC	3 cut(s)	827, 854, 857
Sau3AI	GATC	9 cut(s)	110, 311, 375, 394, 415, 511, 606, 655, 977
Sau96I	GGNCC	2 cut(s)	638, 992
SbfI	CCTGCAGG	1 cut(s)	409
ScrFI	CCNGG	3 cut(s)	309, 1026, 1027
SdaI	CCTGCAGG	1 cut(s)	409
SfaNI	GCATC	3 cut(s)	165, 232, 815
SfcI	CTRYAG	4 cut(s)	106, 405, 801, 854
SfuI	TTCGAA	1 cut(s)	140
SinI	GGWCC	1 cut(s)	992
SmaI	CCCGGG	1 cut(s)	1027
Sse8387I	CCTGCAGG	1 cut(s)	409
SspMI	CTAG	1 cut(s)	782
StyD4I	CCNGG	3 cut(s)	307, 1024, 1025
StyI	CCWWGG	2 cut(s)	443, 863
TaaI	ACNGT	1 cut(s)	156
TaiI	ACGT	1 cut(s)	991
TaqI	TCGA	2 cut(s)	140, 969
TatI	WGTACW	1 cut(s)	276
TfiI	GAWTC	1 cut(s)	966
Tru1I	TTAA	5 cut(s)	89, 230, 434, 585, 926
Tru9I	TTAA	5 cut(s)	89, 230, 434, 585, 926
TscAI	CASTG	2 cut(s)	244, 269
TseFI	GTSAC	4 cut(s)	210, 643, 914, 1045
TseI	GCWGC	3 cut(s)	826, 853, 856
Tsp45I	GTSAC	4 cut(s)	210, 643, 914, 1045
TspDTI	ATGAA	5 cut(s)	737, 755, 838, 887, 1083
TspGWI	ACGGA	1 cut(s)	773
TspMI	CCCGGG	1 cut(s)	1025
TspRI	CASTG	2 cut(s)	244, 269
VpaK11BI	GGWCC	1 cut(s)	992
XapI	RAATTY	3 cut(s)	194, 202, 336
XceI	RCATGY	1 cut(s)	833
XmaI	CCCGGG	1 cut(s)	1025
XmnI	GAANNNNTTC	2 cut(s)	194, 845
XspI	CTAG	1 cut(s)	782
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.