Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002578

Physical Location & Seq

Genomic Coordinates Reverse (-)

8302768 .. 8303109

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0051000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGAAGTGGAAGTTGAATGTGATTGTGCAGTTTTTGCAACTGCAGTGGCACGCACAAGTGATGATTGTTCTGAGGTAGGTCGTATTGTAGACGATTGTAAGACATATATGAGTGCTTTCAATTGGTTACAAGTGCGACACATTTACCATGAAGTAAATGACGTGGCTAATAGGTTAGCGCTTCTTGCTTGTTATTCTTATTCTGATGAGTTTTGGATTGAGGAGGCTCCTGCTATTATTCAGAATGTACTATTTGAGGATTTATGTAAAGCTTCTAATGTAGCCCGAAATTTAGGCTCTTTATACTCTCTGAGGCATAATGTTATATTTTCTCATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0016740 GO:0016757 GO:0016763 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791 GO:1990585

KEGG Pathways

Metabolic & Signaling

ko00514 map00514

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.87

Weight (kDa)

4.65

Isoelectric Point (pI)

53.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	2 - 60	1e-07	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002578)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25260 AT5G13500 AT5G13500 AT5G13500
fragaria_vesca	FvH4_7g03230
malus_domestica	MD02G1284100.v1.1 MD03G1165800.v1.1 MD07G1050100.v1.1
prunus_persica	Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.2G038500_v2.0.a1 Prupe.4G266100_v2.0.a1 Prupe.4G266100_v2.0.a1
pyrus_communis	pycom02g24210 pycom03g12050 pycom07g03590
rosa_chinensis	RchiOBHm_Chr1g0325271 RchiOBHm_Chr5g0050591
rosa_laevigata	RLG00000030148 RLG00000034710
rosa_multiflora	Rmu_sc0001654.1_g000029 Rmu_sc0001954.1_g000008 Rmu_sc0007742.1_g000031
rosa_roxburghii	Rroxscaffold_1G00030260 Rroxscaffold_4G00324840
rosa_rugosa	Rorug01G0050900 Rorug01G0051000 Rorug01G0051100 Rorug05G0262100
rosa_samantha	Rh1AG066300 Rh1BG054400 Rh1CG067700 Rh1DG072500 Rh5AG334000 Rh5AG334100 Rh5BG343600 Rh5CG371200 Rh5DG356400
rosa_wichuraiana	Rw1G005540 Rw5G031510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	289
AfaI	GTAC	1 cut(s)	249
AfeI	AGCGCT	1 cut(s)	180
AgsI	TTSAA	2 cut(s)	17, 121
AjiI	CACGTC	1 cut(s)	163
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
Aor51HI	AGCGCT	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	181
BfmI	CTRYAG	1 cut(s)	42
BfoI	RGCGCY	1 cut(s)	182
BmgBI	CACGTC	1 cut(s)	163
BmiI	GGNNCC	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	63, 302
BseRI	GAGGAG	1 cut(s)	236
BsgI	GTGCAG	1 cut(s)	48
BspCNI	CTCAG	2 cut(s)	64, 303
BspLI	GGNNCC	1 cut(s)	228
BspMAI	CTGCAG	1 cut(s)	46
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstC8I	GCNNGC	1 cut(s)	52
BstDEI	CTNAG	2 cut(s)	72, 311
BstH2I	RGCGCY	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 185
BstSFI	CTRYAG	1 cut(s)	42
BtrI	CACGTC	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	51
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	1 cut(s)	52
CfoI	GCGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	248
CspCI	CAANNNNNGTGG	2 cut(s)	27, 62
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	5 cut(s)	167, 227, 272, 284, 297
CviKI_1	RGCY	5 cut(s)	167, 227, 272, 284, 297
CviQI	GTAC	1 cut(s)	248
DdeI	CTNAG	2 cut(s)	72, 311
Eco47III	AGCGCT	1 cut(s)	180
FaeI	CATG	1 cut(s)	152
FaiI	YATR	8 cut(s)	106, 108, 110, 150, 265, 304, 318, 326
FatI	CATG	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	90
GlaI	GCGC	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	182
HhaI	GCGC	1 cut(s)	181
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	1 cut(s)	179
HinP1I	GCGC	1 cut(s)	179
HindIII	AAGCTT	1 cut(s)	270
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	4 cut(s)	73, 205, 243, 312
Hpy8I	GTNNAC	1 cut(s)	91
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	3 cut(s)	29, 38, 44
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 185
HpyF3I	CTNAG	2 cut(s)	72, 311
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	1 cut(s)	179
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	1 cut(s)	243
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	126
MfeI	CAATTG	1 cut(s)	121
MluCI	AATT	2 cut(s)	121, 289
MnlI	CCTC	5 cut(s)	67, 214, 217, 250, 306
MunI	CAATTG	1 cut(s)	121
MwoI	GCNNNNNNNGC	2 cut(s)	35, 185
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	1 cut(s)	228
PspN4I	GGNNCC	1 cut(s)	228
PstI	CTGCAG	1 cut(s)	46
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
SetI	ASST	5 cut(s)	78, 82, 165, 176, 274
SfcI	CTRYAG	1 cut(s)	42
SgeI	CNNG	9 cut(s)	63, 69, 143, 161, 175, 197, 201, 242, 297
Sse9I	AATT	2 cut(s)	121, 289
TaiI	ACGT	1 cut(s)	165
TasI	AATT	2 cut(s)	121, 289
TatI	WGTACW	1 cut(s)	247
TscAI	CASTG	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	51
XapI	RAATTY	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.